SWFSC List of Publications 

View Document	2005 ACUNA, ELAINE SANDKNOP, RICHARD L. CHARTER, WILLIAM WATSON. 2005. ICHTHYOPLANKTON AND STATION DATA FOR SURFACE (MANTA) AND OBLIQUE (BONGO) PLANKTON TOWS FOR CALIFORNIA COOPERATIVE OCEANIC FISHERIES INVESTIGATIONS SURVEY CRUISES IN 2003. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-370, 112 p.
View Document	AGRAWAL, ADITYA, ROBERT S. SCHICK, ERIC P. BJORKSTEDT, B. C. SPENCE, MATTHEW N. GOSLIN, B. SWART. 2005. A GIS-BASED SYNTHESIS OF INFORMATION ON SPAWNING DISTRIBUTIONS OF CHINOOK SALMON IN THE CALIFORNIA COAST CHINOOK SALMON ESU. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-377, 15 p.
View Document	AGRAWAL, ADITYA, ROBERT S. SCHICK, ERIC P. BJORKSTEDT, B. G. SZERLONG, MATTHEW N. GOSLIN, BRIAN C. SPENCE, THOMAS H. WILLIAMS, K. M. BURNETT. 2005. PREDICTING THE POTENTIAL FOR HISTORICAL COHO, CHINOOK AND STEELHEAD HABITAT IN NORTHERN CALIFORNIA. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-379, 25 p.
	Aguilar, A., and J. C. Garza. 2005. Analysis of major histocompatibility complex class II Beta genes from rockfishes (genus Sebastes). Journal of Fish Biology 67(4):1021-1028.
	Anderson, E. C. 2005. An efficient Monte Carlo method for estimating Ne from temporally spaced samples using a coalescent-based likelihood. Genetics 170(2):955-967.
	Anderson, E.C., and K.K. Dunham. 2005. SPIP 1.0: program for simulating pedigrees and genetic data in age-structured populations. Molecular Ecology Notes 5(2):459-461.
	Anderson, Eric C., and John Carlos Garza. 2005. A description of full parental genotyping. Report submitted to the Pacific Salmon Commission, Vancouver, British Columbia. 11 p.
	Anderson, T. J., M. M. Yoklavich, and S. L. Eittreim. 2005. Linking fine-scale groundfish distributions with large-scale seafloor maps: issues and challenges of combining biological and geological data. P. W. Barnes and J. P. Thomas (eds.), Benthic habitats and the effects of fishing. American Fisheries Society Symposium 41:667-678.
	Anderson, T.J. 2005. Understanding the complex nature of fish-seagrass associations [abstract]. In: P. W. Barnes and J. P. Thomas (eds.), Benthic habitats and the effects of fishing, p. 313. American Fisheries Society Symposium 41.
	Baltz, Ken. 2005. Cruise report DS-05-04, David Starr Jordan, May 1 - June 12, 2005: rockfish recruitment assessment. National Marine Fisheries Service, Santa Cruz, California. 25 p.
	Barlow, J., and B. L. Taylor. 2005. Estimates of sperm whale abundance in the northeastern temperate Pacific from a combined acoustic and visual survey. Marine Mammal Science 21(3):429-445.
View Document	Barnes, Tom, Selina Heppell, Bob Mohn, Stephen Smith, Grant Thompson, John Field, Rod Moore, and Mark Saelens. 2005. Shortspine thornyhead: STAR Panel meeting report (June 20-24, 2005, NOAA Fisheries, Newport, Oregon). Pacific Fisheries Management Council, Portland, Oregon. 5 p.
View Document	Barnes, Tom, Selina Heppell, Bob Mohn, Stephen Smith, Grant Thompson, John Field, Rod Moore, and Mark Saelens. 2005. Longspine thornyhead: STAR Panel meeting report (revised) (June 20-24, 2005, NOAA Fisheries, Newport, Oregon). Pacific Fisheries Management Council, Portland, Oregon. 8 p.
View Document	Barnes, Tom, Selina Heppell, Bob Mohn, Stephen Smith, Grant Thompson, John Field, Rod Moore, and Mark Saelens. 2005. Sablefish: STAR Panel meeting report (June 20-24, 2005, NOAA Fisheries, Newport, Oregon). Pacific Fisheries Management Council, Portland, Oregon. 11 p.
View Document	Barnes, Tom, Selina Heppell, Bob Mohn, Stephen Smith, Grant Thompson, John Field, Rod Moore, and Mark Saelens. 2005. Dover sole: STAR Panel meeting report (June 20-24, 2005, NOAA Fisheries, Newport, Oregon). Pacific Fisheries Management Council, Portland, Oregon. 8 p.
	Barnett-Johnson, R., F. C. Ramos, C. B. Grimes, and R. B. MacFarlane. 2005. Validation of Sr isotopes in otoliths by laser ablation multicollector inductively coupled plasma mass spectrometry (LA-MC-ICPMS): opening avenues in fisheries science applications. Canadian Journal of Fisheries and Aquatic Sciences 62:2425-2430.
	Beasley, I., K. M. Robertson, and P. Arnold. 2005. Description of a new dolphin the Australian snubfin dolphin, Orcaella heinsohni spn. (Cetacea, Delphinidae). Marine Mammal Science 21(3):365-400.
View Document	Berkeley, Steven, Martin Dorn, Ray Conser, Owen Hamel, Robert Mohn, Kevin Piner, Stephen Ralston, John DeVore, and Peter Leipzig. 2005. Canary rockfish: STAR Panel report (Alaska Fisheries Science Center, Seattle, Washington, September 26-30, 2005). Pacific Fisheries Management Council, Portland, Oregon. 8 p.
View Document	BJORKSTEDT, ERIC P. 2005. DARR 2.0: UPDATED SOFTWARE FOR ESTIMATING ABUNDANCE FROM STRATIFIED MARK-RECAPTURE DATA. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-368, 13 p.
View Document	BJORKSTEDT, ERIC P., BRIAN C. SPENCE, JOHN GARZA, DAVID HANKIN, DAVID FULLER, WELDON E. JONES, JERRY SMITH, RICHARD MACEDO. 2005. AN ANALYSIS OF HISTORICAL POPULATION STRUCTURE FOR EVOLUTIONARILY SIGNIFICANT UNITS OF CHINOOK SALMON, COHO SALMON, AND STEELHEAD IN THE NORTH-CENTRAL CALIFORNIA COAST RECOVERY DOMAIN. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-382, 210 p.
	Black, Bryan A., George W. Boehlert, and Mary M. Yoklavich. 2005. Using tree-ring crossdating techniques to validate annual growth increments in long-lived fishes. Canadian Journal of Fisheries and Aquatic Sciences 62:2277-2284.
	Bograd, S. J., and A. W. Mantyla. 2005. On the subduction of upwelled waters in the California Current. Journal of Marine Research 63(5):863-885.
	Bograd, S. J., R. Mendelssohn, F. B. Schwing, and A. J. Miller. 2005. Spatial heterogeneity of sea surface temperature trends in the Gulf of Alaska. Atmosphere-Ocean 43(3):241-247.
	Boughton, David. 2005. Steelhead are widespread but sparse in the Sanctuary. Ecosystem Observations for the Monterey Bay National Marine Sanctuary 2005:14-15.
View Document	BOUGHTON, DAVID A. 2005. CONTRACTION OF THE SOUTHERN RANGE LIMIT FOR ANADROMOUS ONCORHYNCHUS MYKISS. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-380, 21 p.
	Boydstun, LB, and Trent McDonald. 2005. Action plan for monitoring California's coastal anadromous salmonids: a joint planning effort of the California Department of Fish and Game and NOAA Fisheries. Report available from NOAA Fisheries, Southwest Fisheries Science Center, Santa Cruz, CA. 179 p.
View Document	CARRETTA, JAMES V., KARIN A. FORNEY, MARCIA M. MUTO, JAY BARLOW, JASON D. BAKER, BRAD HANSON, AND MARK S. LOWRY, with contributions from Dale Sweetnam, Don Petersen, and Joe Cordaro. 2005. U.S. PACIFIC MARINE MAMMAL STOCK ASSESSMENTS: 2004. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-375, 316 p.
	Chaytor, J. D., C. Goldfinger, M. M. Yoklavich, W. W. Wakefield, and M. E. Clarke. 2005. Structural evidence from Dall Bank of Miocene continental rifting in the Southern California continental borderland. Eos, Transactions, American Geophysical Union 86(52, Suppl.): Abstract T53E-05.
	Chivers, S. J., R. G. Leduc, K. M. Robertson, N. B. Barros, and A. E. Dizon. 2005. Genetic variation of Kogia spp with preliminary evidence for two species of Kogia sima. Marine Mammal Science 21(4):619-634.
	Conti, S. G., D. A. Demer, and A. S. Brierley. 2005. Broad-bandwidth, sound scattering, and absorption from krill (Meganyctiphanes norvegica), mysids (Praunus flexuosus and Neomysis integer), and shrimp (Crangon crangon). ICES Journal of Marine Science 62(5):956-965.
	Conti, Stéphane G., David A. Demer, Michael A. Soule, and Jean H.E. Conti. 2005. An improved multiple-frequency method for measuring in situ target strengths. ICES Journal of Marine Science 62(8):1636-1646.
	De Maddalena, A., A. Preti, and R. Smith. 2005. Mako sharks. Krieger Publishing Company, Malabar, Florida. 72 p.
	Demer, D. A., and S. G. Conti. 2005. New target-strength model indicates more krill in the Southern Ocean. ICES Journal of Marine Science 62(1):25-32.
	Detrich, H. W., C. D. Jones, S. Kim, A. W. North, A. Thurber, and M. Vacchi. 2005. Nesting behavior of the icefish Chaenocephalus aceratus at Bouvetøya Island, Southern Ocean. Polar Biology 28(11):828-832.
View Document	Dorn, Martin, Ray Conser, Owen Hamel, Stephen Berkeley, Robert Mohn, Kevin Piner, Stephen Ralston, John Devore, and Peter Leipzig. 2005. Lingcod: STAR Panel report (Alaska Fisheries Science Center, Seattle, Washington, September 25-29, 2005). Pacific Fisheries Management Council, Portland, Oregon. 5 p.
	Dorn, Martin, Steve Ralston, Owen Hamel, Tom Jagielo, Kevin Piner, Ray Conser, Steve Berkeley, Bob Mohn. 2005. Rebuilding analyses for overfished groundfish stocks: STAR Panel meeting report (NOAA Fisheries, Alaska Fisheries Science Center, Seattle, Washington, September 26-30, 2005). Pacific Fishery Management Council, Portland, Oregon. 10 p.
	Field, J.M., M.M. Yoklavich, G.M. Caillet, S. Bros, J. DeMarignac, and R.N. Lea. 2005. Small-scale analysis of subtidal fish guilds and associated habitat characteristics along central California [abstract]. In: P. W. Barnes and J. P. Thomas (eds.), Benthic habitats and the effects of fishing, p. 317. American Fisheries Society Symposium 41.
	Field, John C., and Stephen Ralston. 2005. Spatial variability in rockfish (Sebastes spp.) recruitment events in the California Current System. Canadian Journal of Fisheries and Aquatic Sciences 62(10):2199-2210.
	Fitzhugh, Gary R., Christopher C. Koenig, Felicia C. Coleman, Churchill B. Grimes, and Wilton Sturges III. 2005. Spatial and temporal patterns in fertilization and settlement of young gag (Mycteroperca microlepis) along the West Florida Shelf. Bulletin of Marine Science 77(3):377-396.
	Félix-Uraga, R., V. M. Gómez-Muñoz, C. Quiñónez-Velázquez, F. N. Melo-Barrera, K. T. Hill, and W. García-Franco. 2005. Pacific sardine (Sardinops sagax) stock discrimination off the West Coast of Baja California and Southern California using otolith morphometry. California Cooperative Oceanic Fisheries Investigations (CalCOFI) Reports 46:113-121.
	Gerrodette, T., and J. Forcada. 2005. Non-recovery of two spotted and spinner dolphin populations in the eastern tropical Pacific Ocean. Marine Ecology Progress Series 291:1-21.
	Goebel, M. E., D. P. Costa, J. T. Sterling, and D. E. Crocker. 2005. AMLR program: Linking prey distribution and abundance with reproductive success in Antarctic fur seals foraging range and diet of females rearing pups. Antarctic Journal of the United States 33:125-127.
	Goebel, M. E., D. P. Costa, M. R. Rutishasuer, and J. T. Sterling. 2005. AMLR program: Foraging range and daily traveling distance of Antarctic fur seals, Cape Shirreff, Livingston Island, Antarctica. Antarctic Journal of the United States 33:165-168.
	Goericke, R., E. Venrick, A. Mantyla, S. J. Bograd, F. B. Schwing, A. Huyer, R. L. Smith, P. A. Wheeler, R. Hooff, W. T. Peterson, C. A. Collins, N. Lo, G. Gaxiola-Castro, R. Durazo, K. D. Hyrenbach, and W. J. Sydeman. 2005. The state of the California Current, 2004-2005: Still cool? California Cooperative Oceanic Fisheries Investigations (CalCOFI) Reports 46: 32-71.
	Goericke, R., S. Bograd, G. Gaxiola-Castro, J. Gomez-Valdes, R. Hooff, A. Huyer, K. D. Hyrenbach, B. Lavaniegos, A. Mantyla, W. T. Peterson, F. B. Schwing, R. L. Smith, W. J. Sydeman, E. Venrick, and P. A. Wheeler. 2005. The state of the California Current, 2003-2004: A rare “normal” year. California Cooperative Oceanic Fisheries Investigations (CalCOFI) Reports 45:27-59.
	Good, Thomas P., Robin S. Waples, and Pete Adams (eds.). 2005. Updated status of federally listed ESUs of west coast salmon and steelhead. NOAA Technical Memorandum NMFS-NWFSC-66. 598 p.
View Document	GOSLIN, MATTHEW N. 2005. CREATING A COMPREHENSIVE DAM DATASET FOR ASSESSING ANADROMOUS FISH PASSAGE IN CALIFORNIA. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-376, 26 p.
	Grimes, C.B., M. Yoklavich, W. Wakefield, and H.G. Greene. 2005. Using lasers to investigate deepwater habitats in the Monterey Bay National Marine Sanctuary off central California [abstract]. In: P. W. Barnes and J. P. Thomas (eds.), Benthic habitats and the effects of fishing, p. 204. American Fisheries Society Symposium 41.
	Gu, X., J. M. Jiang, F. Schwing, and R. Mendelssohn. 2005. Abrupt changes in an 8000-year precipitation reconstruction for Nevada, the western USA. Journal of Geographical Sciences 15:259-272.
	Halsband-Lenk, C., J. J. Pierson, and A. W. Leising. 2005. Reproduction of Pseudocalanus newmani (Copepoda: Calanoida) is deleteriously affected by diatom blooms – A field study. Progress in Oceanography 67:332-348.
	Hankin, David G., John H. Clark, Richard B. Deriso, John Carlos Garza, Gary S. Morishima, Brian E. Riddell, Carl Schwarz, and James B. Scott. 2005. Report of the Expert Panel on the future of the coded wire tag recovery program for Pacific salmon. Pacific Salmon Commission, Vancouver, BC, Canada. 230 p.
	Hare, Jonathan A., Simon Thorrold, Harvey Walsh, Christian Reiss, Arnoldo Valle-Levinson, and Cynthia M. Jones. 2005. Biophysical mechanisms of larval fish ingress into Chesapeake Bay. Marine Ecology Progress Series 303:295-310.
View Document	HELMBRECHT, SARAH, AND DAVID A. BOUGHTON. 2005. RECENT EFFORTS TO MONITOR ANADROMOUS ONCORHYNCHUS SPECIES IN THE CALIFORNIA COASTAL REGION: A COMPILATION OF METADATA. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-381, 200 p.
	Hewitt, R. P., and D. A. Demer. 2005. AMLR program: Evidence for continued decline in krill biomass density from acoustic surveys conducted in the vicinity of the South Shetland Islands during the 1998-1999 austral summer. Antarctic Journal of the United States 33:146-151.
	Hewitt. R. P., and D. A. Demer. 2005. AMLR program: Temporal and spatial variability of Antarctic krill density near South Shetland Islands as estimated from acoustic surveys. Antarctic Journal of the United States 33:83-89.
	Hinke, J. T., D. G. Foley, C. Wilson, and G. M. Watters. 2005. Persistent habitat use by Chinook salmon Oncorhynchus tshawytscha in the coastal ocean. Marine Ecology Progress Series 304:207-220.
	Hinke, J. T., G. M. Watters, G. W. Boehlert, and P. Zedonis. 2005. Ocean habitat use in autumn by chinook salmon in coastal waters of Oregon and California. Marine Ecology Progress Series 285:181-192.
	Holloway, G., D. Tomberlin, and X. Irz. 2005. Hierarchical analysis of production efficiency. R. Scarpa and A. Alberini (eds.), Applications of Simulation Methods in Environmental and Resource Economics, chapter 9. Springer Publishing, Dortrecht, Netherlands.
	Holm-Hansen, O., M. Kahru, and C. D. Hewes. 2005. Deep chlorophyll a maxima (DCMs) in pelagic Antarctic waters. II. Relation to bathymetric features and dissolved iron concentrations. Marine Ecology Progress Series 297:71-81.
	Hsieh, C., C. Reiss, W. Watson, M. J. Allen, J. R. Hunter, R. N. Lea, R. H. Rosenblatt, P. E. Smith, and G. Sugihara. 2005. A comparison of long-term trends and variability in populations of larvae of exploited and unexploited fishes in the Southern California region: A community approach. Progress in Oceanography 67:160-185.
	Hyde, J. R., E. Lynn, R. Humphreys Jr., M. Musyl, A. P. West, and R. Vetter. 2005. Shipboard identification of fish eggs and larvae by multiplex PCR, and description of fertilized eggs of blue marlin, shortbill spearfish, and wahoo. Marine Ecology Progress Series 286:269-277.
View Document	IUCN Independent Scientific Review Panel. 2005. Impacts of Sakhalin II Phase 2 on western North Pacific gray whales and related biodiversity: report of the Independent Scientific Review Panel. IUCN, The World Conservation Union, Gland, Switzerland. 129 p.
	Jacobson, L. D., S. J. Bograd, R. H. Parrish, R. Mendelssohn, and F. B. Schwing. 2005. Biomass and environmental effects on surplus production in California sardine (Sardinops sagax). Canadian Journal of Fisheries and Aquatic Sciences 62:1782-1796.
	Jones, C. D. 2005. AMLR program: Standing stock biomass of eight species of finfish around the South Orkney Islands. Antarctic Journal of the United States 33:152-157.
	Jones, C. D., K.-H. Kock, and S. Wilhelms. 2005. AMLR program: Standing stock biomass of six species of finfish around Elephant Island and the lower South Shetland Islands from the 1998 U.S. AMLR bottom trawl survey. Antarctic Journal of the United States 33:129-133.
	Kaliszewska, Z.A., J. Seger, V.J. Rowntree, S.G. Barco, R. Benegaas, P.B. Best, M.W. Brown, R.L. Brownell Jr., A. Carribero, R. Harcourt, A.R. Knowlton, K. Marshall-Tilas, N.J. Patenaude, M. Rivarola, C.M. Schaeff, M. Sironi, W.A. Smith, and T.K. Yamada. 2005. Population histories of right whales (Cetacea: Eubalaena) inferred from mitochondrial sequence diversities and divergences of the whale lice (Amphipoda: Cyamus). Molecular Ecology 14(11):3439-3456.
	Kim, J. Y., N. C. H. Lo, and J. I. Kim. 2005. Correction factors for quantitative analysis of anchovy eggs and larval stages from the southern waters of Korea. Ocean Science Journal 40(1):11-16.
	King, J. R., H. Batchelder, J. Boldt, W. Crawford, A. Hollowed, S. Kim, V. Lapko, A. MacCall, D. Mackas, N. Mantua, G. McFarlane, S. McKinnell, J. Overland, I. Perry, J. Polovina, J. Schweigert, F. Schwing, Q. Tang, A. Yatsu, and J. Zhao. 2005. Coherent regional responses. J.R. King (ed.), Report of the study group on fisheries and ecosystem responses to recent regime shifts. PICES Scientific Report 28:37-50.
	King, J.R., G. McFarlane, A. Hollowed, A. MacCall, and J. Polovina. 2005. Implications for the management of marine resources. J.R. King (ed.), Report of the study group on fisheries and ecosystem responses to recent regime shifts. PICES Scientific Report 28:51-54.
	Klamath River Technical Advisory Team. 2005. Klamath River fall Chinook age-specific escapement, river harvest, and run size estimates, 2004 run. Klamath Fishery Management Council, Yreka, California. 15 p.
	Klamath River Technical Advisory Team. 2005. Ocean abundance projections and prospective harvest levels for Klamath River fall Chinook, 2005 season. Klamath Fishery Management Council, Yreka, California. 24 p.
	Kock, Karl-Hermann, and Christopher D. Jones. 2005. Fish stocks in the Southern Scotia Arc region—a review and prospects for future research. Reviews in Fisheries Science 13(2):75-108.
View Document	LARESE, JASON P. 2005. USING LIDAR TO DETECT TUNA SCHOOLS UNASSOCIATED WITH DOLPHINS IN THE EASTERN TROPICAL PACIFIC, A REVIEW AND CURRENT STATUS. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-378, 7 p.
	Leising, A. W., J. P. Pierson, C. Halsband-Lenk, R. Horner, and J. Postel. 2005. Copepod grazing during spring blooms: does Calanus pacificus avoid harmful diatoms? Progress in Oceanography 67:384-405.
	Leising, A. W., J. P. Pierson, C. Halsband-Lenk, R. Horner, and J. Postel. 2005. Copepod grazing during spring blooms: can Pseudocalanus newmani induce trophic cascades? Progress in Oceanography 67:406-421.
	Leising, A. W., J. P. Pierson, S. Cary, and B. Frost. 2005. Copepod foraging and predation risk within the surface layer during nighttime feeding forays. Journal of Plankton Research 27:981-1001.
	Leising, A. W., R. Horner, J. P. Pierson, C. Halsband-Lenk, and J. Postel. 2005. The balance between microzooplankton grazing and phytoplankton growth in a highly productive fjord. Progress in Oceanography 67:366-383.
	Lessa, Enrique P., Gabriela Wlasiuk, and John Carlos Garza. 2005. Dynamics of genetic differentiation in the Rio Negro tuco-tuco (Ctenomys rionegrensis) at the local and geographical scales. In: E. A. Lacey and P. Myers (eds.), Mammalian diversification: from chromosomes to phylogeography, p. 155-173. University of California Publications in Zoology, vol. 133.
	Lipsky, J.D., M.E. Goebel, C.S. Reiss, and V. Loeb. 2005. Using carapace measurements to determine the sex of Antarctic krill (Euphausia superba). CCAMLR Working Group on Ecosystem Monitoring and Management (Yokohama, Japan, 4-15 July 2005), Document no. WG-EMM-05/26 (25 p.).
View Document	LIPSKY, JESSICA D. (EDITOR). 2005. AMLR 2004/2005 FIELD SEASON REPORT: OBJECTIVES, ACCOMPLISHMENTS AND TENTATIVE CONCLUSIONS. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-385, 167 p.
	Lo, N. C. H., Macewicz, B. J., and D. A. Griffith. 2005. Spawning biomass of Pacific sardine (Sardinops sagax), from 1994-2004 off California. California Cooperative Oceanic Fisheries Investigations (CalCOFI) Reports 46:93-112.
	Loeb, V., and W. A. Armstrong. 2005. AMLR program: Salps and other zooplankton in the Elephant Island area during austral summer 1999. Antarctic Journal of the United States 33:139-145.
	Loeb, V., V. Siegel, and W. A. Armstrong. 2005. AMLR program: The zooplankton assemblage sampled during austral summer 1998 compared to those sampled in 1993 to 1997. Antarctic Journal of the United States 33:107-114.
	Lowry, M. S., and K. A. Forney. 2005. Abundance and distribution of California sea lions (Zalophus californianus) in central and northern California during 1998 and summer 1999. Fishery Bulletin (U.S.) 103:331-343.
	MacCall, A., H. Batchelder, J. King, D. Mackas, N. Mantua, G. McFarlane, I. Perry, J. Schweigert, and F. Schwing. 2005. Recent ecosystem changes in the California Current. J.R. King (ed.), Report of the study group on fisheries and ecosystem responses to recent regime shifts. PICES Scientific Report 28: Appendix 2, p. 65-86.
	MacCall, Alec D. 2005. Assessment of vermilion rockfish in southern and northern California. Pacific Fishery Management Council, Portland, Oregon. 128 p.
	MacFarlane, R. B., S. Ralston, C. Royer, and E. C. Norton. 2005. Juvenile chinook salmon (Oncorhynchus tshawytscha) growth on the central California coast during the 1998 El Niño and 1999 La Niña. Fisheries Oceanography 14(5):321-332.
View Document	Marasco, Richard, Daniel Goodman, Churchill Grimes, Peter Lawson, André Punt, and Terry Quinn. 2005. Strengthening scientific input and ecosystem-based fishery management for the Pacific and North Pacific Fishery Management Councils: Suggestions from a panel discussion. Pacific States Marine Fisheries Commission, Portland, Oregon. 42 p.
	Martin, J. E., R. P. Hewitt, and R. S. Holt. 2005. The U.S. Antarctic Marine Living Resources (AMLR) program: 1998-1999 field season. Antarctic Journal of the United States 33:134-138.
	Martin, J. E., R. P. Hewitt, and R. S. Holt. 2005. The U.S. Antarctic Marine Living Resources (AMLR) program: 1997-1998 field season activities. Antarctic Journal of the United States 33:79-82.
	Mead, James G., and Robert L. Brownell, Jr. 2005. Order Cetacea. In: D.E. Wilson and D.M. Reeder (eds.), Mammal species of the world: a taxonomic and geographic reference (3rd ed.), vol. 1, p. 723-743. John Hopkins University Press.
	Mendelssohn, R., S. J. Bograd, F. B. Schwing, and D. M. Palacios. 2005. Teaching old indices new tricks: a state-space analysis of El Niño related climate indices. Geophysical Research Letters 32: L07709, doi:10.1029/2005GL022350.
	Miller, A. J., E. Di Lorenzo, D. J. Neilson, H. J. Kim. A. Capotondi, M. Alexander, S. J. Bograd, F. B. Schwing, R. Mendelssohn, K. Hedstrom, and D. L. Musgrave. 2005. Interdecadal changes in mesoscale eddy variance in the Gulf of Alaska circulation: Implications for the Steller sea lion decline. Atmosphere-Ocean 43(3):231-240.
	Morin, P.A., A. Nestler, N.T. Rubio-Cisneros, K.M. Robertson, and S.L. Mesnick. 2005. Interfamilial characterization of a region of the ZFX and ZFY genes facilitates gender determination in cetaceans and other mammals. Molecular Ecology 14(10):3275-3286.
	Moser, H. G., and W. Watson. 2005. Neoscopelidae: Blackchins. W. J. Richards (ed.), Early stages of Atlantic fishes: an identification guide for the western central north Atlantic, p. 463-471. CRC Press, Boca Raton.
	Moser, H. G., and W. Watson. 2005. Order Myctophiformes. W. J. Richards (ed.), Early stages of Atlantic fishes: an identification guide for the western central north Atlantic, p. 461. CRC Press, Boca Raton.
	Moser, H. G., and W. Watson. 2005. Myctophidae: Lanternfishes. W. J. Richards (ed.), Early stages of Atlantic fishes: an identification guide for the western central north Atlantic, p. 473-579. CRC Press, Boca Raton.
	Munch, S. B., M. L. Snover, G. M. Watters, and M. Mangel. 2005. A unified treatment of top-down and bottom-up control of reproduction in populations. Ecology Letters 8:691-695.
View Document	NOAA Fisheries. 2005. Green sturgeon (Acipenser medirostris) status review update. Biological Review Team, Santa Cruz Laboratory, Southwest Fisheries Science Center, NOAA Fisheries. 31 p.
	Norton, J. G., and J. E. Mason. 2005. Relationship of California sardine (Sardinops sagax) abundance to ecological changes in the California Current System. California Cooperative Oceanic Fisheries Investigations (CalCOFI) Reports 46:83-92.
	O'Hanley, J. R., and D. Tomberlin. 2005. Optimizing the removal of small fish passage barriers. Enviornmental Modeling and Assessment 10(2):85-98.
	Pacific Fishery Management Council (Salmon Technical Team). 2005. Preseason report II: Analysis of proposed regulatory options for 2005 ocean salmon fisheries. Pacific Fishery Management Council, Portland, Oregon. 47 p.
	Pacific Fishery Management Council (Salmon Technical Team). 2005. Review of 2004 ocean salmon fisheries. Pacific Fishery Management Council, Portland, Oregon. 308 p.
	Pacific Fishery Management Council (Salmon Technical Team). 2005. Klamath River fall chinook stock-recruitment analysis. Pacific Fishery Management Council, Portland, Oregon. 36 p.
	Pacific Fishery Management Council (Salmon Technical Team). 2005. Preseason report I: Stock abundance analysis for 2005 ocean salmon fisheries. Pacific Fishery Management Council, Portland, Oregon. 90 p.
	Pacific Fishery Management Council (Salmon Technical Team). 2005. Technical basis for the Klamath River fall chinook conservation objective. Pacific Fishery Management Council, Portland, Oregon. 6 p.
	Pacific Fishery Management Council (Salmon Technical Team). 2005. Preseason report III: Analysis of council adopted management measures for 2005 ocean salmon fisheries. Pacific Fishery Management Council, Portland, Oregon. 35 p.
	Palacios, D. M., and S. J. Bograd. 2005. A census of Tehuantepec and Papagayo eddies in the northeastern tropical Pacific. Geophysical Research Letters 32, L23606, doi:10.1029/2005GL024324.
	Palsboll, Per J., Martine Berube, Eric C. Anderson, and Kevin K. Dunham. 2005. High levels of statistical uncertainty in 'gametic' recapture estimates of male abundance in humpback whales. Marine Ecology Progress Series 295:305-307.
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