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SWFSC List of Publications

3567 documents matched your search
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2009

Anderson, Eric C., and John Carlos Garza. 2009. Estimation of population size with molecular genetic data. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-448, 57 p.

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Barlow, Jay, Megan C. Ferguson, Elizabeth A. Becker, Jessica V. Redfern, Karin A. Forney, Ignacio L. Vilchis, Paul C. Fiedler, Tim Gerrodette, and Lisa T. Ballance. 2009. Predictive modeling of cetacean densities in the eastern Pacific Ocean. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-444, 206 p.

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Benet, David L., E.J. Dick, and Donald E. Pearson. 2009. Life history aspects of greenspotted rockfish (Sebastes chlorostictus) from central California. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-446, 43 p.

Botsford, Louis W., Daniel R. Brumbaugh, Churchill Grimes, Julie B. Kellner, John Largier, Michael R. O'Farrell, Stephen Ralston, Elaine Soulanille, and Vidar Wespestad. 2009. Connectivity, sustainability, and yield: bridging the gap between conventional fisheries management and marine protected areas. Reviews in Fish Biology and Fisheries 19(1):69-95.

Bowlin, N.M., W. Watson, R.L. Charter, and S.M. Manion. 2009. Ichthyoplankton and station data for surface (manta) and oblique (bongo) plankton tows for California Cooperative Oceanic Fisheries Investigations survey cruises and California Current Ecosystem Survey in 2006. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-442, 152 p.

Brownell, Robert L., Jr., Katherine Ralls, Simone Baumann-Pickering, and M. Michael Poole. 2009. Behavior of melon-headed whales, Peponocephala electra, near oceanic islands. Marine Mammal Science 25(3):639-658.

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Carretta, James V., Karin A. Forney, and Scott R. Benson. 2009. Preliminary estimates of harbor porpoise abundance in California waters from 2002 to 2007. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-435, 10 p.

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Carretta, James V., Karin A. Forney, Mark S. Lowry, Jay Barlow, Jason Baker, Dave Johnston, Brad Hanson, Marcia M. Muto, Deanna Lynch, and Lilian Carswell. 2009. U.S. Pacific marine mammal stock assessments: 2008. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-434, 336 p.

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Chute, A., L. Jacobson, P. Rago, and A. MacCall. 2009. Deep sea red crab. The Northeast Data Poor Stocks Working Group report (December 8-12, 2008 meeting), part A: Skate species complex, deep sea red crab, Atlantic wolfish, scup, and black sea bass, p. 181-214. NOAA National Marine Fisheries Service, Northeast Fisheries Science Center Reference Document 09-02a.

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Clapham, Phil, Yuri Mikhalev, Wally Franklin, David Paton, C. Scott Baker, Yulia V. Ivashchenko, and Robert L. Brownell, Jr. 2009. Catches of humpback whales, Megaptera novaeangliae, by the Soviet Union and other nations in the Southern Ocean, 1947-1973. Marine Fisheries Review 71(1):39-43.

Cox, Martin J., David A. Demer, Joseph D. Warren, George R. Cutter, and Andrew S. Brierley. 2009. Multibeam echosounder observations reveal interactions between Antarctic krill and air-breathing predators. Marine Ecology Progress Series 378:199-209.

Cutter, George R., Josiah S. Renfree, Martin J. Cox, Andrew S. Brierley, and David A. Demer. 2009. Modelling three-dimensional directivity of sound scattering by Antarctic krill: progress towards biomass estimation using multibeam sonar. In: David A. Demer and David N. MacLennan (eds.), The ecosystem approach with fisheries acoustics and complementary technologies: Selected papers of an ICES Symposium (Bergen, Norway, 16-20 June 2008). ICES Journal of Marine Science 66(6):1245-1251.

Demer, David A., and David N. MacLennan (eds.). 2009. The ecosystem approach with fisheries acoustics and complementary technologies: Selected papers of an ICES Symposium (Bergen, Norway, 16-20 June 2008). ICES Journal of Marine Science 66(6):961-1433.

Demer, David A., George R. Cutter, Josiah S. Renfree, and John L. Butler. 2009. A statistical-spectral method for echo classification. In: David A. Demer and David N. MacLennan (eds.), The ecosystem approach with fisheries acoustics and complementary technologies: Selected papers of an ICES Symposium (Bergen, Norway, 16-20 June 2008). ICES Journal of Marine Science 66(6):1081-1090.

Demer, David A., Rudy J. Kloser, David N. MacLennan, and Egil Ona. 2009. An introduction to the proceedings and a synthesis of the 2008 ICES Symposium on the Ecosystem Approach with Fisheries Acoustics and Complementary Technologies (SEAFACTS). In: David A. Demer and David N. MacLennan (eds.), The ecosystem approach with fisheries acoustics and complementary technologies: Selected papers of an ICES Symposium (Bergen, Norway, 16-20 June 2008). ICES Journal of Marine Science 66(6):961-965.

Fiedler, Paul C. 2009. The ocean environment. W.F. Perrin, B. Würsig, and J.G.M. Thewissen (eds.), Encyclopedia of marine mammals (2nd ed.), p. 792-797. Academic Press, San Diego.

Fujiwara, Masami. 2009. Environmental stochasticity. Encyclopedia of Life Sciences. John Wiley & Sons, Chichester. 7 p.

Fujiwara, Masami, and Michael S. Mohr. 2009. Identifying environmental signals from population abundance data using multivariate time-series analysis. Oikos 118(11):1712-1720.

Hamilton, T.A., J.V. Redfern, J. Barlow, L.T. Ballance, T. Gerrodette, R.S. Holt, K.A. Forney, and B.L. Taylor. 2009. Atlas of cetacean sightings from Southwest Fisheries Science Center cetacean ecosystem surveys: 1986-2005. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-440, 72 p.

Hankin, David G., Michael S. Mohr, and Hans Voight. 2009. Estimating the proportions of closely related species: performance of the two-phase ratio estimator. Journal of Agricultural, Biological, and Environmental Statistics 14(1):15-32.

Hannesson, Rögnvaldur, Samuel Herrick, Jr., and John Field. 2009. Ecological and economic considerations in the conservation and management of the Pacific sardine (Sardinops sagax). Canadian Journal of Fisheries and Aquatic Sciences 66(5):859-868.

Heublein, Joseph C., John T. Kelly, Carlos E. Crocker, A. Peter Klimley, and Steven T. Lindley. 2009. Migration of green sturgeon, Acipenser medirostris, in the Sacramento River. Environmental Biology of Fishes 84(3):245-258.

Hilger, James, and Jeffrey Englin. 2009. Utility theoretic semi-logarithmic incomplete demand systems in a natural experiment: Forest fire impacts on recreational values and use. Resource and Energy Economics 31(4):287-298.

Israel, Joshua A., K. Jun Bando, Eric C. Anderson, and Bernie May. 2009. Polyploid microsatellite data reveal stock complexity among estuarine North American green sturgeon (Acipenser medirostris). Canadian Journal of Fisheries and Aquatic Sciences 66(9):1491-1504.

Kaplan, David M., Louis W. Botsford, Michael R. O'Farrell, Steven D. Gaines, and Salvador Jorgensen. 2009. Model-based assessment of persistence in proposed marine protected area designs. Ecological Applications 19(2):433-448.

Laidig, Thomas E., Diana L. Watters, and Mary M. Yoklavich. 2009. Demersal fish and habitat associations from visual surveys on the central California shelf. Estuarine, Coastal and Shelf Science 83(4):629-637.

Larese, J.P. 2009. Fish and invertebrate bycatch estimates for the California set gillnet fishery targeting halibut and white seabass, 1990-2006. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-441, 50 p.

Larese, Jason P., and Susan J. Chivers. 2009. Growth and reproduction of female eastern and whitebelly spinner dolphins incidentally killed in the eastern tropical Pacific tuna purse-seine fishery. Canadian Journal of Zoology 87(6):537-552.

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Lindley, S.T., C.B. Grimes, M.S. Mohr, W. Peterson, J. Stein, J.T. Anderson, L.W. Botsford, D.L. Bottom, C.A. Busack, T.K. Collier, J. Ferguson, J.C. Garza, A.M. Grover, D.G. Hankin, R.G. Kope, P.W. Lawson, A. Low, R.B. MacFarlane, K. Moore, M. Palmer-Zwahlen, F.B. Schwing, J. Smith, C. Tracy, R. Webb, B.K. Wells, and T.H. Williams. 2009. What caused the Sacramento River fall Chinook stock collapse? U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-447, 121 p.

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Lindley, S.T., C.B. Grimes, M.S. Mohr, W. Peterson, J. Stein, J.T. Anderson, L.W. Botsford, D.L. Bottom, C.A. Busack, T.K. Collier, J. Ferguson, J.C. Garza, A.M. Grover, D.G. Hankin, R.G. Kope, P.W. Lawson, A. Low, R.B. MacFarlane, K. Moore, M. Palmer-Zwahlen, F.B. Schwing, J. Smith, C. Tracy, R. Webb, B.K. Wells, and T.H. Williams. 2009. What caused the Sacramento River fall Chinook stock collapse? Pre-publication report to the Pacific Fishery Management Council, March 18, 2009. 118 p.

Love, Milton S., Mary Yoklavich, and Donna M. Schroeder. 2009. Demersal fish assemblages in the Southern California Bight based on visual surveys in deep water. Environmental Biology of Fishes 84(1):55-68.

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McClatchie, Sam (ed.). 2009. Report on the NMFS California Current Ecosystem Survey (CCES) (April and July-August 2008). U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-438, 98 p.

Mora, E. A., S. T. Lindley, D. L. Erickson, and A. P. Klimley. 2009. Do impassable dams and flow regulation constrain the distribution of green sturgeon in the Sacramento River, California? Journal of Applied Ichthyology 25(Suppl. 2):39-47.

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National Marine Fisheries Service. 2009. Report to Congress: The state of science to support an ecosystem approach to regional fishery management: Pursuant to the Magnuson-Stevens Fishery Conservation and Management Act, Section 406. U.S. Department of Commerce, NOAA Technical Memorandum NMFS-F/SPO-96. 17 p.

O'Farrell, Michael R., Mary M. Yoklavich, and Milton S. Love. 2009. Assessment of habitat and predator effects on dwarf rockfishes (Sebastes spp.) using multi model inference. Environmental Biology of Fishes 85(3):239-250.

Pearse, Devon E., and Eric C. Anderson. 2009. Multiple paternity increases effective population size. Molecular Ecology 18(15):3124-3127.

Pearse, Devon E., Sean A. Hayes, Morgan H. Bond, Chad V. Hanson, Eric C. Anderson, R. Bruce MacFarlane, and John Carlos Garza. 2009. Over the falls? Rapid evolution of ecotypic differentiation in steelhead/rainbow trout (Oncorhynchus mykiss). Journal of Heredity 100(5):515-525.

Perrin, William F. 2009. Early days of the tuna/dolphin problem. Aquatic Mammals 35(2):292-305.

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Rankin, Shannon, René Swift, Denise Risch, Barbara Taylor, Lorenzo Rojas-Bracho, Armando Jaramillo-Legorreta, Jonathon Gordon, Tom Akamatsu, and Satoko Kimura. 2009. Vaquita Expedition 2008: Preliminary results from a towed hydrophone survey of the vaquita from the Vaquita Express in the upper Gulf of California. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-439, 38 p.

Regan, T., B. Taylor, G. Thompson, J. Cochrane, T. Ragen, R. Merrick, M. Nammack, S. Rumsey, S. Swartz, T. Ragen, K. Ralls, and M. Runge. 2009. Developing a structure for quantitative listing criteria for the U.S. Endangered Species Act using performance testing: phase 1 report. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-437, 10 p.

Reiss, Christian S., Christopher D. Hewes, and Osmund Holm-Hansen. 2009. Influence of atmospheric teleconnections and upper circumpolar deep water on phytoplankton biomass around Elephant Island, Antarctica. Marine Ecology Progress Series 377:51-62.

Renfree, Josiah S., Sean A. Hayes, and David A. Demer. 2009. Sound-scattering spectra of steelhead (Oncorhynchus mykiss), coho (O. kisutch), and Chinook (O. Tshawytscha) salmonids. In: David A. Demer and David N. MacLennan (eds.), The ecosystem approach with fisheries acoustics and complementary technologies: Selected papers of an ICES Symposium (Bergen, Norway, 16-20 June 2008). ICES Journal of Marine Science 66(6):1091-1099.

Rundio, David E. 2009. Community-habitat relationships in coastal streams in Big Sur, California, USA: travertine influences macroinvertebrate abundance and community structure. Hydrobiologia 620(1):91-108.

Santora, Jarrod A., Christian S. Reiss, Anthony M. Cossio, and Richard R. Veit. 2009. Interannual spatial variability of krill (Euphausia superba) influences seabird foraging behavior near Elephant Island, Antarctica. Fisheries Oceanography 18(1):20-35.

Schaffler, Jason J., Christian S. Reiss, and Cynthia M. Jones. 2009. Patterns of larval Atlantic croaker ingress into Chesapeake Bay, USA. Marine Ecology Progress Series 378:187-197.

Schick, R.S., and M.E. Lutcavage. 2009. Inclusion of prey data improves prediction of bluefin tuna (Thunnus thynnus) distribution. Fisheries Oceanography 18(1):77-81.

Schramm, Yolanda, S.L. Mesnick, J. de la Rosa, D.M. Palacios, M.S. Lowry, D. Aurioles-Gamboa, H.M. Snell, and S. Escorza-Treviño. 2009. Phylogeography of California and Galápagos sea lions and population structure within the California sea lion. Marine Biology 156(7):1375-1387.

Scott, Michael D., and Susan J. Chivers. 2009. Movements and diving behavior of pelagic spotted dolphins. Marine Mammal Science 25(1):137-160.

Sogard, Susan M., Thomas H. Williams, and Heidi Fish. 2009. Seasonal patterns of abundance, growth, and site fidelity of juvenile steelhead in a small coastal California stream. Transactions of the American Fisheries Society 138(3):549-563.

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Sturm, Erick A., Elizabeth A. Gilbert-Horvath, John Carlos Garza, and R. Bruce MacFarlane. 2009. Creation of a captive broodstock program for southern coho salmon (Oncorhynchus kisutch): results from the initial rearing and spawning of the first brood year. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-436, 66 p.

Van Cise, A.M. (ed.). 2009. AMLR 2008/09 field season report. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-445, 84 p.

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Walli, Andreas, Steven L.H. Teo, Andre Boustany, Charles J. Farwell, Tom Williams, Heidi Dewar, Eric Prince, and Barbara A. Block. 2009. Seasonal movements, aggregations and diving behavior of Atlantic bluefin tuna (Thunnus thynnus) revealed with archival tags. PLoS ONE 4(7):e6151 (18 p.).

Warren, Joseph D., Jarrod A. Santora, and David A. Demer. 2009. Submesoscale distribution of Antarctic krill and its avian and pinniped predators before and after a near gale. Marine Biology 156(3):479-491.

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Yack, Tina M., Jay P. Barlow, Shannon Rankin, and Douglas Gillespie. 2009. Testing and validation of automated whistle and click detectors using PAMGUARD 1.0. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-443, 55 p.

Širovic, Ana, and David A. Demer. 2009. Sounds of captive rockfishes. Copeia 2009(3):502-509.

Širovic, Ana, George R. Cutter, John L. Butler, and David A. Demer. 2009. Rockfish sounds and their potential use for population monitoring in the Southern California Bight. In: David A. Demer and David N. MacLennan (eds.), The ecosystem approach with fisheries acoustics and complementary technologies: Selected papers of an ICES Symposium (Bergen, Norway, 16-20 June 2008). ICES Journal of Marine Science 66(6):981-990.

2008

Aguilar, A., D. A. Jessup, J. Estes, and J. C. Garza. 2008. The distribution of nuclear genetic variation and historical demography of sea otters. Animal Conservation 11(1):35-45.

Aguilar, Andres, and John Carlos Garza. 2008. Isolation of 15 single nucleotide polymorphisms from coastal steelhead, Oncorhynchus mykiss (Salmonidae). Molecular Ecology Resources 8(3):659-662.

Alonzo, Suzanne H., Teresa Ish, Meisha Key, Alec D. MacCall, and Marc Mangel. 2008. The importance of incorporating protogynous sex change into stock assessments. Bulletin of Marine Science 83(1):163-179.

Anderson, Eric C., Robin S. Waples, and Steven T. Kalinowski. 2008. An improved method for predicting the accuracy of genetic stock identification. Canadian Journal of Fisheries and Aquatic Sciences 65(7):1475-1486.

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Archer, Frederick I., Annette E. Henry, and Lisa T. Ballance. 2008. Stenella abundance research line transect and ecosystem (STAR-LITE) 2007 cruise report. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-433, 19 p.

Au, David W., Susan E. Smith, and Christina Show. 2008. Shark productivity and reproductive protection, and a comparison with teleosts. Camhi, Merry D., Ellen K. Pikitch, and Elizabeth A. Babcock (eds.), Sharks of the open ocean: biology, fisheries and conservation, p. 298-308. Blackwell Science, Ames, Iowa.

Bailey, H., G. Shillinger, D. Palacios, S. Bograd, J. Spotila, F. Paladino, and B. Block. 2008. Identifying and comparing phases of movement by leatherback turtles using state-space models. Journal of Experimental Marine Biology and Ecology 356:128-135.

Baltz, Ken. 2008. Cruise report, NOAA Ship David Starr Jordan DS-07-03, May 4 - June 17, 2007: Rockfish recruitment assessment, Fisheries Ecology Division, NOAA NMFS SWFSC. National Marine Fisheries Service, Santa Cruz, California. 25 p. (Author not specified in document.).

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Barlow, Jay, Shannon Rankin, Alan Jackson, and Annette Henry. 2008. Marine mammal data collected during the Pacific Islands Cetacean and Ecosystem Assessment Survey (PICEAS) conducted aboard the NOAA ship McArthur II, July-November 2005. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-420, 27 p.

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Barlow, Jay, Shannon Rankin, and Steve Dawson. 2008. A guide to constructing hydrophones and hydrophone arrays for monitoring marine mammal vocalizations. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-417, 19 p.

Barnett-Johnson, Rachel, Thomas E. Pearson, Frank C. Ramos, Churchill B. Grimes, and R. Bruce MacFarlane. 2008. Tracking natal origins of salmon using isotopes, otoliths, and landscape geology. Limnology and Oceanography 53(4):1633-1642.

Bond, Morgan H., Sean A. Hayes, Chad V. Hanson, and R. Bruce MacFarlane. 2008. Marine survival of steelhead (Oncorhynchus mykiss) enhanced by a seasonally closed estuary. Canadian Journal of Fisheries and Aquatic Sciences 65(10):2242-2252.

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CalCOFI Committee (Roger Hewitt, Tony Koslow, and Laura Rogers-Bennett). 2008. Report of the CalCOFI Committee. California Cooperative Oceanic Fisheries Investigations (CalCOFI) Reports 49:5-13.

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Carretta, James V., Jay Barlow, and Lyle Enriquez. 2008. Acoustic pingers eliminate beaked whale bycatch in a gill net fishery. Marine Mammal Science 24(4):956-961.

Connolly, P.J., T.H. Williams, and R.E. Gresswell (eds.). 2008. The 2005 Coastal Cutthroat Trout Symposium: status, management, biology, and conservation. American Fisheries Society, Oregon Chapter.

Cummins, K., C. Furey, S. Lindley, J. Nestler, and J. Shurts. 2008. Listen to the river: an independent review of the CVPIA fisheries program. Prepared under contract for the U.S. Bureau of Reclamation and the U.S. Fish and Wildlife Service. 84 p.

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Cutter, G. R., Jr., and David A. Demer (eds.). 2008. California Current Ecosystem Survey 2006 acoustic cruise reports for NOAA FSV Oscar Dyson and NOAA FRV David Starr Jordan. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-415, 98 p.

Deas, Michael, Peter Goodwin, Steve Lindley, Christa Woodley, and Thomas Williams. 2008. Temperature management and modeling workshop in support of an Operations Criteria and Plan biological assessment and biological opinion (April 1, 2008). Report prepared for Michael Healey, CALFED Lead Scientist. CALFED Science Program. 20 p.

Demer, David A., and Josiah S. Renfree. 2008. Variations in echosounder-transducer performance with water temperature. ICES Journal of Marine Science 65(6):1021-1035.

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Donald E. Pearson, Brenda Erwin, and Meisha Key. 2008. Reliability of California's groundfish landing estimates from 1969-2006. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-431, 133 p.

Donohoe, Christopher J., Peter B. Adams, and Chantell F. Royer. 2008. Influence of water chemistry and migratory distance on ability to distinguish progeny of sympatric resident and anadromous rainbow trout (Oncorhynchus mykiss). Canadian Journal of Fisheries and Aquatic Sciences 65(6):1060-1075.

Duffy, Walter G., and Eric P. Bjorkstedt. 2008. Demographics of coastal cutthroat trout Oncorhynchus clarkii clarkii in Prairie Creek, California. P.J. Connolly, T.H. Williams, and R.E. Gresswell (eds.), The 2005 Coastal Cutthroat Trout Symposium: status, management, biology, and conservation, p. 100-106. American Fisheries Society, Oregon Chapter.

Elsdon, Travis S., Brian K. Wells, Steven E. Campana, Bronwyn M. Gillanders, Cynthia M. Jones, Karin E. Limburg, David H. Secor, Simon R. Thorrold, and Benjamin D. Walther. 2008. Otolith chemistry to describe movements and life-history parameters of fishes: hypotheses, assumptions, limitations and inferences. Oceanography and Marine Biology: An Annual Review 46:297-330.

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Fiedler, Paul C., and Jaime Färber Lorda. 2008. Zooplankton night/day ratios and the oxygen minimum layer in the eastern Pacific. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-424, 12 p.

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Field, John. 2008. Jumbo squid (Dosidicus gigas) invasions in the eastern Pacific Ocean [Symposium introduction]. California Cooperative Oceanic Fisheries Investigations (CalCOFI) Reports 49:79-81.

Fujiwara, Masami. 2008. Identifying interactions among salmon populations from observed dynamics. Ecology 89(1):4-11.

Fujiwara, Masami. 2008. Effects of an autocorrelated stochastic environment and fisheries on the age at maturity of Chinook salmon. Theoretical Ecology 1(2):89-101.

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Garza, John Carlos, and Devon E. Pearse. 2008. Population genetic structure of Oncorhynchus mykiss in the California Central Valley. Final report for California Department of Fish and Game Contract #PO485303 with University of California, Santa Cruz and NOAA Southwest Fisheries Science Center, 110 Shaffer Rd. Santa Cruz, CA 95060. 54 p.

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Gerrodette, Tim, George Watters, Wayne Perryman, and Lisa Ballance. 2008. Estimates of 2006 dolphin abundance in the eastern tropical Pacific, with revised estimates from 1986-2003. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-422, 39 p.

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Gilpatrick, James W., Jr., and Wayne L. Perryman. 2008. Geographic variation in external morphology of North Pacific and Southern Hemisphere blue whales (Balaenoptera musculus). Journal of Cetacean Research and Management 10(1):9-21.

Goin, Jonathan J., Thomas H. Williams, and Christopher J. Donohoe. 2008. Variation of vertebral number in juvenile Oncorhynchus mykiss in relation to upstream distance from the ocean. Environmental Biology of Fishes 82(3):207-213.

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Grober-Dunsmore, Rikki, Lisa Wooninck, Charles Wahle, and Lauren Wenzel. 2008. State of the nation's de facto marine protected areas. National Marine Protected Areas Center, Santa Cruz, California. 81 p.

Grober-Dunsmore, Rikki, Lisa Wooninck, John Field, Cameron Ainsworth, Jim Beets, Steve Berkeley, Jim Bohnsack, Rafe Boulon, Richard Brodeur, John Brodziak, Larry Crowder, Danny Gleason, Mark Hixon, Les Kaufman, Bill Lindberg, Marc Miller, Lance Morgan, and Charles Wahle. 2008. Vertical zoning in marine protected areas: ecological considerations for balancing pelagic fishing with conservation of benthic communities. Fisheries 33(12):598-610.

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Hall, Candice, Keith W. Roberts, Sean M. Finney, William P. Mowitt, David Gothan, and Lisa T. Ballance. 2008. Report of a hydrographic survey of Clipperton Ridge conducted aboard the David Starr Jordan during the Stenella Abundance Research cruise 2006. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-419, 41 p.

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Hannesson, Rögnvaldur, and Samuel F. Herrick. 2008. Catch strategies for the Pacific sardine (Sardinops sagax). California Cooperative Oceanic Fisheries Investigations (CalCOFI) Reports 49:222-231.

Hayes, S. A., M. H. Bond. C. V. Hanson, E. V. Freund, J. J. Smith, E. C. Anderson, A. J. Ammann, and R. B. MacFarlane. 2008. Steelhead growth in a small central California watershed: upstream and estuarine rearing patterns. Transactions of the American Fisheries Society 137(1):114-128.

Hewitt, Roger P., Christopher D. Jones, and Inigo Everson. 2008. Reconciling fisheries with conservation: three examples from the Southern Ocean. J.L. Nielsen, et al. (eds.), Reconciling fisheries with conservation: Proceedings of the Fourth World Fisheries Congress (May 2-6, 2004, Vancouver, British Columbia, Canada), vol. II. American Fisheries Society Symposium 49:1681-1697.

Hoepffner, Nick, Cara Wilson, and Samantha Lavender. 2008. Ocean colour and climate change. T. Platt, et al. (eds.), Why ocean colour? The societal benefits of ocean-colour technology, p. 103-109. International Ocean Colour Coordinating Group (IOCCG), Report no. 7, Dartmouth, Canada.

Hoepffner, Nicolas, Frédéric Mélin, Mark Dowell, John Marra, Toshiro Saino, and Cara Wilson. 2008. Biogeochemical cycles. T. Platt, et al. (eds.), Why ocean colour? The societal benefits of ocean-colour technology, p. 31-46. International Ocean Colour Coordinating Group (IOCCG), Report no. 7, Dartmouth, Canada.

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Jackson, A., T. Gerrodette, S. Chivers, M. Lynn, S. Rankin, and S. Mesnick. 2008. Marine mammal data collected during a survey in the eastern tropical Pacific ocean aboard NOAA ships David Starr Jordan and McArthur II, July 28 - December 7, 2006. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-421, 45 p.

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Kane, Emily A., Paula A. Olson, Tim Gerrodette, and Paul C. Fiedler. 2008. Prevalence of the commensal barnacle Xenobalanus globicipitis on cetacean species in the eastern tropical Pacific Ocean, and a review of global occurrence. Fishery Bulletin 106(4):395-404.

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Key, Meisha, Alec D. MacCall, John Field, Debbie Aseltine-Neilson, and Kirk Lynn. 2008. The 2007 assessment of blue rockfish (Sebastes mystinus) in California. Pacific Fishery Management Council, Portland, Oregon. 155 p.

Kinziger, Andrew P., Eric J. Loudenslager, David G. Hankin, Eric C. Anderson, and John Carlos Garza. 2008. Hybridization between spring- and fall-run Chinook salmon returning to the Trinity River, California. North American Journal of Fisheries Management 28(5):1426-1438.

Kobayashi, D.R., J.J. Polovina, D.M. Parker, N. Kamezaki, I.-J. Cheng, I. Uchida, P.H. Dutton, and G.H. Balazs. 2008. Pelagic habitat characterization of loggerhead sea turtles, Caretta caretta, in the North Pacific Ocean (1997-2006): insights from satellite tag tracking and remotely sensed data. Journal of Experimental Marine Biology and Ecology 356:96-114.

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Laidig, Thomas E., Keith M. Sakuma, John R. Hyde, William Watson, and Cynthia Taylor Lawley. 2008. Identification, description, and daily growth of pelagic larval and juvenile squarespot rockfish, Sebastes hopkinsi (Family Sebastidae). California Cooperative Oceanic Fisheries Investigations (CalCOFI) Reports 49:212-221.

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Larese, Jason P., and Atilio L. Coan Jr. 2008. Fish and invertebrate bycatch estimates for the California drift gillnet fishery targeting swordfish and thresher shark, 1990-2006. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-426, 53 p.

Larese, Jason P., and Susan J. Chivers. 2008. Age estimates for female eastern and whitebelly spinner dolphins (Stenella longirostris) incidentally killed in the eastern tropical Pacific tuna purse-seine fishery from 1973-82. Journal of Cetacean Research and Management 10(2):169-177.

Lindley, S.T., M.L. Moser, D.F. Erickson, M. Belchik, D. Welch, E. Rechiski, J.T. Kelly, J. Heublein, and A.P. Klimley. 2008. Marine migration of North American green sturgeon. Transactions of the American Fisheries Society 137:182-194.

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Lo, Nancy C.H., Beverly J. Macewicz, David A. Griffith, and Richard L. Charter. 2008. Spawning biomass of Pacific sardine (Sardinops sagax) off U.S. in 2008. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-430, 33 p.

Love, Milton S., and Mary Yoklavich. 2008. Habitat characteristics of juvenile cowcod, Sebastes levis (Scorpaenidae), in Southern California. Environmental Biology of Fishes 82(2):195-202.

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Lowry, Mark S., James V. Carretta, and Karin A. Forney. 2008. Pacific harbor seal census in California during May-July 2002 and 2004. California Fish and Game 94(4):180-193.

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MacCall, Alec D. 2008. Status of bocaccio off California in 2007. Pacific Fishery Management Council, Portland, Oregon. 67 p.

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MacCall, Alec D. 2008. Bocaccio rebuilding analysis for 2007. Pacific Fishery Management Council, Portland, Oregon. 13 p.

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MacFarlane, R.B., S. Hayes, and B. Wells. 2008. Coho and Chinook salmon decline in California during the spawning seasons of 2007/08. 4 p.

Manoukis, Nicholas C., and Eric C. Anderson. 2008. GuiLiner: a configurable and extensible graphical user interface for scientific analysis and simulation software. arXiv:0806.0314v1 [cs.HC], 4 p. URL: http://arxiv.org/abs/0806.0314v1.

Mantyla, Arnold W., Steven J. Bograd, and Elizabeth L. Venrick. 2008. Patterns and controls of chlorophyll-a and primary productivity cycles in the Southern California Bight. Journal of Marine Systems 73(1-2):48-60.

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McClatchie, Sam, Ralf Goericke, J. Anthony Koslow, Franklin B. Schwing, Steven J. Bograd, Richard Charter, William Watson, Nancy Lo, Kevin Hill, Jon Gottschalck, Michelle l'Heureux, Yan Xue, William T. Peterson, Robert Emmett, Curtis Collins, Gilberto Gaxiola-Castro, Reginaldo Durazo, Mati Kahru, B. Greg Mitchell, K. David Hyrenbach, W.J. Sydeman, R.W. Bradley, P. Warzybok, and Eric Bjorkstedt. 2008. The state of the California Current, 2007-2008: La Niña conditions and their effects on the ecosystem. California Cooperative Oceanic Fisheries Investigations (CalCOFI) Reports 49:39-76.

McClure, Michelle M., Stephanie M. Carlson, Timothy J. Beechie, George R. Pess, Jeffrey C. Jorgensen, Susan M. Sogard, Sonia E. Sultan, Damon M. Holzer, Joseph Travis, Beth L. Sanderson, Mary E. Power, and Richard W. Carmichael. 2008. Evolutionary consequences of habitat loss for Pacific anadromous salmonids. Evolutionary Applications 1(2):300-318.

Narum, S. R., M. Banks, T. D. Beacham, M. R. Bellinger, M. R. Campbell, J. Dekoning, A. Elz, C. M. Guthrie III, C. Kozfkay, K. M. Miller, P. Moran, R. Phillips, L. W. Seeb, C. T. Smith, K. Warheit, S. F. Young, and J. C. Garza. 2008. Differentiating salmon populations at broad and fine geographical scales with microsatellites and single nucleotide polymorphisms. Molecular Ecology 17(15):3464-3477.

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Olson, Paula A., and Tim Gerrodette. 2008. Killer whales of the eastern tropical Pacific: a catalog of photo-identified individuals. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-428, 120 p.

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Perrin, William F., Kelly M. Robertson, and William A. Walker. 2008. Diet of the striped dolphin, Stenella coeruleoalba, in the eastern tropical Pacific Ocean. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-418, 26 p.

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Pomeroy, Caroline, and Melissa M. Stevens. 2008. Santa Cruz Harbor commercial fishing community profile: California Fishing Communities Project. California Sea Grant, Publication no. T-066. 34 p.

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Preti, Antonella, Suzanne Kohin, Heidi Dewar, and Darlene Ramon. 2008. Feeding habits of the bigeye thresher shark (Alopias superciliosus) sampled from the California-based drift gillnet fishery. California Cooperative Oceanic Fisheries Investigations (CalCOFI) Reports 49:202-211.

Ralston, Stephen, and Michael R. O'Farrell. 2008. Spatial variation in fishing intensity and its effect on yield. Canadian Journal of Fisheries and Aquatic Sciences 65(4):588-599.

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Rankin, Shannon, Jay Barlow, and Julie Oswald. 2008. An assessment of the accuracy and precision of localization of a stationary sound source using a two-element towed hydrophone array. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-416, 29 p.

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Rankin, Shannon, Jay Barlow, Julie Oswald, and Lisa Ballance. 2008. Acoustic studies of marine mammals during seven years of combined visual and acoustic line-transect surveys for cetaceans in the eastern and central Pacific Ocean. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-429, 58 p.

Rankin, Shannon, Julie N. Oswald, and Jay Barlow. 2008. Acoustic behavior of dolphins in the Pacific Ocean: implications for using passive acoustic methods for population studies. Canadian Acoustics 36(1):88-92.

Reiss, Christian S., Anthony M. Cossio, Valerie Loeb, and David A. Demer. 2008. Variations in the biomass of Antarctic krill (Euphausia superba) around the South Shetland Islands, 1996-2006. ICES Journal of Marine Science 65(4): 497-508.

Reiss, Christian S., David M. Checkley Jr, and Steven J. Bograd. 2008. Remotely sensed spawning habitat of Pacific sardine (Sardinops sagax) and Northern anchovy (Engraulis mordax) within the California Current. Fisheries Oceanography 17(2):126-136.

Robillard, Eric, Christian S. Reiss, and Cynthia M. Jones. 2008. Reproductive biology of bluefish (Pomatomus saltatrix) along the East Coast of the United States. Fisheries Research 90(1-3):198-208.

Rundio, David E., and Steven T. Lindley. 2008. Seasonal patterns of terrestrial and aquatic prey abundance and use by Oncorhynchus mykiss in a California coastal basin with a Mediterranean climate. Transactions of the American Fisheries Society 137(2):467-480.

Smith, Susan E., David W. Au, and Christina Show. 2008. Intrinsic rates of increase in pelagic elasmobranchs. Camhi, Merry D., Ellen K. Pikitch, and Elizabeth A. Babcock (eds.), Sharks of the open ocean: biology, fisheries and conservation, p. 288-297. Blackwell Science, Ames, Iowa.

Smith, Susan E., Randall C. Rasmussen, Darlene A. Ramon, and Gregor M. Cailliet. 2008. The biology and ecology of thresher sharks (Alopiidae). Camhi, Merry D., Ellen K. Pikitch, and Elizabeth A. Babcock (eds.), Sharks of the open ocean: biology, fisheries and conservation, p. 60-68. Blackwell Science, Ames, Iowa.

Sogard, Susan M., Elizabeth Gilbert-Horvath, Eric C. Anderson, Rebecca Fisher, Steven A. Berkeley, and J. Carlos Garza. 2008. Multiple paternity in viviparous kelp rockfish, Sebastes atrovirens. Environmental Biology of Fishes 81(1):7-13.

Sogard, Susan M., Steven A. Berkeley, and Rebecca Fisher. 2008. Maternal effects in rockfishes Sebastes spp.: a comparison among species. Marine Ecology Progress Series 360:227-236.

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Spence, Brian C., Eric P. Bjorkstedt, John Carlos Garza, Jerry J. Smith, David G. Hankin, David Fuller, Weldon E. Jones, Rrichard Macedo, Thomas H. Williams, and Ethan Mora. 2008. A framework for assessing the viability of threatened and endangered salmon and steelhead in the North-Central California Coast Recovery Domain. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-423, 173 p.

Starr, Richard, Mary Yoklavich, et al. 2008. Monitoring MPAs in deep water off central California: 2007 IMPACT submersible baseline survey. California Sea Grant College Program, Publication no. T-067. 21 p.

Szerlong, R.G., and D.E. Rundio. 2008. A statistical modeling method for estimating mortality and abundance of spawning salmon from a time series of counts. Canadian Journal of Fisheries and Aquatic Sciences 65:17-26.

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Thomson, Cynthia J., and Corinne Pinkerton. 2008. Habitat restoration cost references for salmon recovery planning. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-425, 75 p.

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Van Cise, Amy M. (ed.). 2008. AMLR 2007/2008 field season report: objectives, accomplishments and tentative conclusions. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-427, 141 p.

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Vetter, Russ, Suzanne Kohin, Antonella Preti, Sam McClatchie, and Heidi Dewar. 2008. Predatory interactions and niche overlap between mako shark, Isurus oxyrinchus, and jumbo squid, Dosidicus gigas, in the California Current. California Cooperative Oceanic Fisheries Investigations (CalCOFI) Reports 49:142-156.

Waples, Robin S., Peter B. Adams, James Bohnsack, and Barbara L. Taylor. 2008. Legal viability, societal values, and SPOIR: response to D'Elia et al. Conservation Biology 22(4):1075-1077.

Watters, G.M. and C. Bessey. 2008. Variation in the probability that male coho salmon will mature early: inferences from hierarchical models. Transactions of the American Fisheries Society 137:70-95.

Watters, G.M., R.J. Olson, J.C. Field, and T.E. Essington. 2008. Range expansion of the Humboldt squid was not caused by tuna fishing. Proceedings of the National Academy of Sciences of the United States of America 105:E5.

Wells, B. K., J. C. Field, J. A. Thayer, C. B. Grimes, S. J. Bograd, W. J. Sydeman, F. B Schwing, and R. Hewitt. 2008. Untangling the relationships among climate, prey and top predators in an ocean ecosystem. Marine Ecology Progress Series 364:15-29.

Wells, Brian K., Churchill B. Grimes, John G. Sneva, Scott McPherson, and James B. Waldvogel. 2008. Relationships between oceanic conditions and growth of Chinook salmon (Oncorhynchus tshawytscha) from California, Washington, and Alaska, USA. Fisheries Oceanography 17(2):101-125.

Williams, Thomas H., and Gordon H. Reeves. 2008. Geographic variation in genetic and meristic characters of coastal cutthroat trout. Connolly, P.J., T.H. Williams, and R.E. Gresswell (eds.), The 2005 Coastal Cutthroat Trout Symposium: status, management, biology, and conservation, p. 110-111. American Fisheries Society, Oregon Chapter.

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Williams, Thomas H., Brian C. Spence, Walt Duffy, Dave Hillemeier, George Kautsky, Tom E. Lisle, Mike McCain, Thomas E. Nickelson, Ethan Mora, and Tom Pearson. 2008. Framework for assessing viability of threatened coho salmon in the Southern Oregon/Northern California Coast Evolutionarily Significant Unit. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-432, 96 p.

Wilson, Cara, Jesus Morales, Shailesh Nayak, Ichio Asanuma, and Gene Feldman. 2008. Ocean-colour radiometry and fisheries. T. Platt, et al. (eds.), Why ocean colour? The societal benefits of ocean-colour technology, p. 47-58. International Ocean Colour Coordinating Group (IOCCG), Report no. 7, Dartmouth, Canada.

Wilson, Cara, Tracy A. Villareal, Nikolai Maximenko, Steven J. Bograd, Joseph P. Montoya, and Caimee A. Schoenbaechler. 2008. Biological and physical forcings of late summer chlorophyll blooms at 30°N in the oligotrophic Pacific. Journal of Marine Systems 69(3-4):164-176.

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Yoklavich, M.M., and V. O'Connell. 2008. Twenty years of research on demersal communities using the Delta submersible in the northeast Pacific. J. R. Reynolds and H. G. Greene (eds.), Marine habitat mapping technology for Alaska, p. 143-155. Alaska Sea Grant College Program, University of Alaska, Fairbanks.

2007

Adams, P. B., C. Grimes, J. E. Hightower, S. T. Lindley, M. L. Moser, and M. J. Parsley. 2007. Population status of North American green sturgeon, Acipenser medirostris. Environmental Biology of Fishes 76(3-4):339-356.

Adams, P., L. Botsford, K. Gobalet, R. Leidy, D. McEwan, P. Moyle, J. Smith, J. Williams, and R. Yoshiyama. 2007. Coho salmon are native south of San Francisco Bay: a reexamination of North American coho salmon's southern range limit. Fisheries 32(8):441-451.

Aguilar, A., and J.C. Garza. 2007. MHC evolution in rockfishes. E.A. Berntson, P.S. Levin, and P. Moran (eds.), Conservation of north Pacific rockfishes: ecological genetics and stock structure: proceedings of the workshop (March 2-3, 2004, Seattle, Washington), p. 44-46. U.S. Department of Commerce, NOAA Technical Memorandum NMFS-NWFSC-80.

Aguilar, A., and J.C. Garza. 2007. Patterns of historical balancing selection on the salmonid major histocompatibility complex class II ß gene. Journal of Molecular Evolution 65:34-43.

Alfaro-Shigueto, J., P.H. Dutton, M. Van Bressem, and J. Mangel. 2007. Interactions between leatherback turtles and Peruvian artisanal fisheries. Chelonian Conservation and Biology 6:129-134.

Amend, Mark A., Mary M. Yoklavich, Yuri Rzhanov, Churchill B. Grimes, and W. Waldo Wakefield. 2007. Mosaics of benthic habitats using laser line scan technology. Brian J. Todd and H. Gary Greene (eds.), Mapping the seafloor for habitat characterization, p. 61-69. Geological Association of Canada Special Paper 47.

Anderson, Eric C., and Montgomery Slatkin. 2007. Estimation of the number of individuals founding colonized populations. Evolution 61(4):972-983.

Anderson, T. J., and M. M. Yoklavich. 2007. Multiscale habitat associations of deepwater demersal fishes off central California. Fishery Bulletin (U.S.) 105:168-179.

Anderson, T. J., D. A. Roberts, and D. Howard. 2007. The distribution, abundance, and habitat relationships of deep-water demersal fishes in the Cordell Bank National Marine Sanctuary (CBNMS), USA: the importance of establishing sound baselines for future monitoring [extended abstract]. J. C. Day, et al (eds.), IMPAC 1 2005 Conference Proceedings (First International Marine Protected Areas Congress, Victoria, Australia, October 2005), p. 222-223. IMPAC.

Anderson, Tara J., Guy R. Cochrane, Dale A. Roberts, Hank Chezar, and Gerry Hatcher. 2007. A rapid method to characterize seabed habitats and associated macro-organisms. Brian J. Todd and H. Gary Greene (eds.), Mapping the seafloor for habitat characterization, p. 71-79. Geological Association of Canada Special Paper 47.

Baker, C.S., J.G. Cooke, S. Lavery, M.L. Dalebout, Y. Ma, N. Funahashi, C. Carraher, and R.L. Brownell Jr. 2007. Estimating the number of whales entering trade using DNA profiling and capture-recapture analysis of market products. Molecular Ecology 16:2617-2626.

Ballance, L.T., R.L. Pitman, R.P. Hewitt, D. Siniff, W. Trivelpiece, P. Clapham, and R.L. Brownell Jr. 2007. The removal of large whales from the Southern Ocean: evidence for long-term ecosystem effects? J. Estes et al. (eds.), Whales, whaling and ocean ecosystems. University of California Press.

Baltz, Ken. 2007. Cruise report, NOAA Ship David Starr Jordan DS-06-03, May 5 - June 18, 2006: Rockfish recruitment assessment, Fisheries Ecology Division, NOAA NMFS SWFSC. National Marine Fisheries Service, Santa Cruz, California. 23 p. (Author not specified in document.).

Barlow, J., and K.A. Forney. 2007. Abundance and population density of cetaceans in the California Current ecosystem. Fishery Bulletin 105:509-526.

Barnett-Johnson, R., C.B. Grimes, C.F. Royer, and C.J. Donohoe. 2007. Identifying the contribution of wild and hatchery Chinook salmon (Oncorhynchus tshawytscha) to the ocean fishery using otolith microstructure as natural tags. Canadian Journal of Fisheries and Aquatic Sciences 64:1683-1692.

Barrett, B., and D. Tomberlin. 2007. Sediment production on forest road surfaces in California's redwood region: results for hydrologic year 2005-2006. Proceedings of the 2007 Society of American Foresters National Convention. Society of American Foresters, Washington, DC.

Benson, S.R., K.A. Forney, J.T. Harvey, J.V. Carretta, and P.H. Dutton. 2007. Abundance, distribution, and habitat of leatherback turtles (Dermochelys coriacea) off California, 1990-2003. Fishery Bulletin 105:337-347.

Benson, S.R., K.M. Kisokau, L. Ambio, V. Rei, P.H. Dutton, and D. Parker. 2007. Beach use, internesting movement, and migration of leatherback turtles, Dermochelys coriacea, nesting on the north coast of Papua New Guinea. Chelonian Conservation and Biology 6:7-14.

Benson, S.R., P.H. Dutton, C. Hitipeuw, B. Samber, J. Bakarbessy, and S. Parker. 2007. Post-nesting migrations of leatherback turtles (Dermochelys coriacea) from Jamursba-Medi, Bird's Head Peninsula, Indonesia. Chelonian Conservation and Biology 6:150-154.

Biuw, M., L. Boehme, C. Guinet, M. Hindell, D. Costa, J.-B. Charrassin, F. Roquet, F. Bailleul, M. Meredith, S. Thorpe, Y. Tremblay, B. McDonald, Y.-H. Park, S. Rintoul, N. Bindoff, M. Goebel, D. Crocker, P. Lovell, J. Nicholson, F. Monks, and M.A. Fedak. 2007. Variations in behavior and condition of a Southern Ocean top predator in relation to in situ oceanographic conditions. Proceedings of the National Academy of Sciences of the United States of America 104:13705-13710.

Bond, Morgan H., Chad V. Hanson, Robert Baertsch, Sean A. Hayes, and R. Bruce MacFarlane. 2007. A new low-cost instream antenna system for tracking passive integrated transponder (PIT)-tagged fish in small streams. Transactions of the American Fisheries Society 136(3):562-566.

Boughton, David A., Michael Gibson, Robert Yedor, and Elise Kelley. 2007. Stream temperature and the potential growth and survival of juvenile Oncorhynchus mykiss in a southern California creek. Freshwater Biology 52(7):1353-1364.

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BOUGHTON, DAVID A., PETER B. ADAMS, ERIC ANDERSON, CRAIG FUSARO, EDWARD KELLER, ELISE KELLEY, LEO LENTSCH, JENNIFER NIELSEN, KATIE PERRY, HELEN REGAN, JERRY SMITH, CAMM SWIFT, LISA THOMPSON, FRED WATSON. 2007. VIABILITY CRITERIA FOR STEELHEAD OF THE SOUTH-CENTRAL AND SOUTHERN CALIFORNIA COAST. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-407, 33 p.

Brand, E. J., I. C. Kaplan, C. J. Harvey, P. S. Levin, E. A. Fulton, A. J. Hermann, and J. C. Field. 2007. A spatially explicit ecosystem model of the California Current's food web and oceanography. U.S. Department of Commerce, NOAA Technical Memorandum NMFS-NWFSC-84. 145 p.

Brown, J.A., and L. Wooninck. 2007. Developing design guidance for offshore MPAs. MPA News 9(2):4.

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Carretta, J.V., K.A. Forney, M.S. Lowry, J. Barlow, J. Baker, B. Hanson, and M.M. Muto. 2007. U.S. Pacific marine mammal stock assessments: 2007. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-414, 316 p.

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CARRETTA, JAMES V., KARIN A. FORNEY, MARCIA M. MUTO, JAY BARLOW, JASON D. BAKER, BRAD HANSON, AND MARK S. LOWRY. 2007. U.S. PACIFIC MARINE MAMMAL STOCK ASSESSMENTS: 2006. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-398, 312 p.

Chivers, S.J., R.W. Baird, D.J. McSweeney, D.L. Webster, N.M. Hedrick, and J.C. Salinas. 2007. Genetic variation and evidence for population structure in eastern North Pacific false killer whales (Pseudorca crassidens). Canadian Journal of Zoology 85(7):783-794.

Clapham, P. J., S. Childerhouse, N. J. Gales, L. Rojas-Bracho, M. F. Tillman, and R. L. Brownell Jr. 2007. The whaling issue: Conservation, confusion, and casuistry. Marine Policy 31(3):314-319.

Conti, S. G., B. D. Maurer, M. A. Drawbridge, and D. A. Demer. 2007. Measurements of total scattering spectra from bocaccio (Sebastes paucispinis). Fishery Bulletin (U.S.) 105:153-157.

Copps, Stephen L., Mary M. Yoklavich, Graeme B. Parkes, W. Waldo Wakefield, Allison Bailey, H. Gary Greene, Chris Goldfinger, and Robert W. Burn. 2007. Applying marine habitat data to fishery management on the US west coast: initiating a policy-science feedback loop. Brian J. Todd and H. Gary Greene (eds.), Mapping the seafloor for habitat characterization, p. 451-462. Geological Association of Canada Special Paper 47.

Cutter, G.R. Jr., and D.A. Demer. 2007. Accounting for scattering directivity and fish behaviour in multibeam-echosounder surveys. ICES Journal of Marine Science 64:1664-1674.

Dalebout, M.L., C.S. Baker, D. Steele, K.M. Robertson, S.J. Chivers, W.F. Perrin, J.G. Mead, R.V. Grace, and T.D. Schofield. 2007. A divergent mtDNA lineage among Mesoplodon beaked whales: evidence for a new whale in the tropical Pacific? Marine Mammal Science 23(4):954-966.

Danil, K., and S.J. Chivers. 2007. Growth and reproduction of female short-beaked common dolphins, Delphinus delphis, in the eastern tropical Pacific. Canadian Journal of Zoology 85(1):108-121.

Deiner, K., J.C. Garza, R. Coey, and D.J. Girman. 2007. Population structure and genetic diversity of trout (Oncorhynchus mykiss) above and below natural and man-made barriers in the Russian River, California. Conservation Genetics 8(2):437-454.

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Dick, E.J., and Stephen Ralston. 2007. Cowcod rebuilding analysis. National Marine Fisheries Service Fisheries Ecology Division, Santa Cruz, California. Report to the Pacific Fisheries Management Council, Portland, Oregon. 20 p.

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Dick, E.J., Stephen Ralston, and Don Pearson. 2007. Status of cowcod, Sebastes levis, in the Southern California Bight. National Marine Fisheries Service, SWFSC Fisheries Ecology Division, Santa Cruz, California. Report to the Pacific Fisheries Management Council, Portland, Oregon. 98 p.

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Dorn, Martin, Stephen Ralston, Andre Punt, Thomas Helser, Owen Hamel, Tom Jagielo, Patrick Cordue, Peter Leipzig, and Kelly Ames. 2007. Southern black rockfish STAR Panel report (National Marine Fisheries Service, Seattle, Washington, October 1-5, 2007). Pacific Fisheries Management Council, Portland, Oregon. 12 p.

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Dorn, Martin, Stephen Ralston, Andre Punt, Thomas Helser, Owen Hamel, Tom Jagielo, Patrick Cordue, Peter Leipzig, and Kelly Ames. 2007. Blue rockfish STAR Panel report (National Marine Fisheries Service, Seattle, Washington, October 1-5, 2007). Pacific Fisheries Management Council, Portland, Oregon. 14 p.

Dutton, P.H., C. Hitipeuw, M. Zein, S.R. Benson, G. Petro, J. Pita, V. Rei, L. Ambio, and J. Bakarbessy. 2007. Status and genetic structure of nesting populations of leatherback turtles (Dermochelys coriacea) in the western Pacific. Chelonian Conservation and Biology 6:47-53.

Eguchi, T., T. Gerrodette, R.L. Pitman, J.A. Seminoff, and P.H. Dutton. 2007. At-sea density and abundance estimates of the olive ridley turtle Lepidochelys olivacea in the eastern tropical Pacific. Endangered Species Research 3:191-203.

Field, J.C, E.J. Dick, M. Key, M. Lowry,Y. Lucero, A. MacCall, D. Pearson, S. Ralston, W. Sydeman, J. Thayer. 2007. Population dynamics of an unexploited rockfish, Sebastes jordani, in the California Current. Biology, Assessment, and Management of North Pacific Rockfishes, Alaska Sea Grant College Program, AK-SG-07-01, 2007, pp. 73-94.

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Field, John (ed.), Anne Allen, John Hyde, Janet Mason, Deanna Pinkard, Stephen Ralston, Susan Sogard, Cynthia Thomson, and William Watson. 2007. NMFS Southwest Fisheries Science Center: Agency report to the Technical Subcommittee of the Canada-U.S. Groundfish Committee. In: Report of the Technical Subcommittee of the Canada-United States Groundfish Committee: Forty-eighth annual meeting of the TSC (April 24-25, 2007, Southwest Fisheries Science Center, Santa Cruz, California), p. 183-203. Pacific States Marine Fisheries Commission, Portland, Oregon.

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Field, John C. 2007. Status of the chilipepper rockfish, Sebastes goodei, in 2007. Southwest Fisheries Science Center, Fisheries Ecology Division, Santa Cruz, California. Report to the Pacific Fisheries Management Council, Portland, Oregon. 226 p.

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Field, John C., Edward J. Dick, and Alec D. MacCall. 2007. Stock assessment model for the shortbelly rockfish, Sebastes jordani, in the California Current. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-405, 83+21 p.

Field, John C., Ken Baltz, A. Jason Phillips, and William A. Walker. 2007. Range expansion and trophic interactions of the jumbo squid, Dosidicus gigas, in the California Current. California Cooperative Oceanic Fisheries Investigations (CalCOFI) Reports 48:131-146.

Fisher, Joseph, Marc Trudel, Arnold Ammann, Joseph A. Orsi, Jack Piccolo, Cynthia Bucher, Edmundo Casillas, Jeffrey A. Harding, R. Bruce MacFarlane, Richard D. Brodeur, John F. T. Morris, and David W. Welch. 2007. Comparisons of the coastal distributions and abundances of juvenile Pacific salmon from central California to the northern Gulf of Alaska. C. B. Grimes et al. (eds.), The ecology of juvenile salmon in the northeast Pacific Ocean: regional comparisons. American Fisheries Society Symposium 57:31-80.

Fisher, R., S. Sogard, and S. Berkeley. 2007. Trade-offs between size and energy reserves reflect alternative strategies for optimizing larval survival potential in rockfish. Marine Ecology Progress Series 344:257-270.

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FORNEY, KARIN A. 2007. PRELIMINARY ESTIMATES OF CETACEAN ABUNDANCE ALONG THE U.S. WEST COAST AND WITHIN FOUR NATIONAL MARINE SANCTUARIES DURING 2005. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-406, 27 p.

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Forney, Karin A., Donald R. Kobayashi. 2007. Updated Estimates of Mortality and Injury of Cetaceans in the Hawaii-based Longline Fishery, 1994-2005. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-412, 30 p.

Francis, Robert C., Mark A. Hixon, M. Elizabeth Clarke, Steven A. Murawski, and Stephen Ralston. 2007. Ten commandments for ecosystem-based fisheries scientists. Fisheries 32(5):217-233.

Fujiwara, M. 2007. Extinction-effective population index: incorporating life-history variations in population viability analysis. Ecology 88(9):2345-2353.

Goebel, M.E., J.D. Lipsky, C.R. Reiss, and V.J. Loeb. 2007. Using carapace measurements to determine the sex of Antarctic krill, Euphausia superba. Polar Biology 30:307-315.

Grimes, Churchill B., Richard D. Brodeur, Lewis J. Haldorson, and Stewart M. McKinnell (eds.). 2007. The ecology of juvenile salmon in the northeast Pacific Ocean: regional comparisons. Proceedings of the Symposium "Ocean Ecology of Salmon in Western North America: Regional Comparisons" (Anchorage, AK, 12-13 September 2005). American Fisheries Society Symposium 57. 247 p.

Grimes, Churchill B., Richard D. Brodeur, Stewart M. McKinnell, and Lewis J. Haldorson. 2007. An introduction to the ecology of juvenile salmon in the northeast Pacific Ocean: regional comparisons. C. B. Grimes et al. (eds.), The ecology of juvenile salmon in the northeast Pacific Ocean: regional comparisons. Proceedings of the Symposium "Ocean Ecology of Salmon in Western North America: Regional Comparisons" (Anchorage, AK, 12-13 September 2005). American Fisheries Society Symposium 57:1-6.

Hard, J.J., J.M. Myers, M.J. Ford, R.G. Kope, G.R. Pess, R.S. Waples, G.A. Winans, B.A. Berejikian, F.W. Waknitz, P.B. Adams, P.A. Bisson, D.E. Campton, and R.R. Reisenbichler. 2007. Status review of Puget Sound steelhead (Oncorhynchus mykiss). U.S. Department of Commerce, NOAA Technical Memorandum NMFS-NWFSC-81. 117 p.

Hayes, S.A., E.V. Freund, C.V. Hanson, M.H. Bond, and R.B. MacFarlane. 2007. Archival tagging of salmonids on the central California coast. P. Sheridan, J.W. Ferguson, and S.L. Downing (eds.), Report of the National Marine Fisheries Service workshop on advancing electronic tag technologies and their use in stock assessments (August 23-25, 2005), p. 39-40. U.S. Department of Commerce, NOAA Technical Memorandum NMFS-F/SPO-82.

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He, Xi, Andre Punt, Alec D. MacCall, and Stephen Ralston. 2007. Rebuilding analysis for widow rockfish in 2007 – an update. Pacific Fishery Management Council, Portland, Oregon. 17 p.

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He, Xi, Donald E. Pearson, E.J. Dick, John C. Field, Stephen Ralston, and Alec D. MacCall. 2007. Status of the widow rockfish resource in 2007 – an update. Pacific Fishery Management Council, Portland, Oregon. 92 p.

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Hildner, K. K. 2007. Data sources: California Habitat Restoration Project cost analysis. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-402, 93 p.

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Hildner, K. K., and C. J. Thomson. 2007. Salmon habitat restoration cost modeling: results and lessons learned. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-404, 191 p.

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Hildner, K. K., and C. J. Thomson. 2007. Using the California Habitat Restoration Project database to estimate habitat restoration costs for ESA-listed salmonids. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-403, 220 p.

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HILL, KEVIN T., EMMANIS DORVAL, NANCY C.H. LO, BEVERLY J. MACEWICZ, CHRISTINA SHOW, AND ROBERTO FELIX-URAGA. 2007. ASSESSMENT OF THE PACIFIC SARDINE RESOURCE IN 2007 FOR U.S. MANAGEMENT IN 2008. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-413, 157+21 p.

Hill, S.L., K. Reid, S.E. Thorpe, J. Hinke, and G.M. Watters. 2007. A compilation of parameters for ecosystem dynamics models of the Scotia Sea - Antarctic Peninsula region. CCAMLR Science 14:1-25.

Hinke, J.T., K. Salwicka, S.G. Trivelpiece, G.M. Watters, and W.Z. Trivelpiece. 2007. Divergent responses of Pygoscelis penguins reveal a common environmental driver. Oecologia 153:845-855.

Hitipeuw, C., P.H. Dutton, S. Benson, J. Thebu, and J. Bakarbessy. 2007. Population status and internesting movement of leatherback turtles, Dermochelys coriacea, nesting on the northwest coast of Papua, Indonesia. Chelonian Conservation and Biology 6:28-36.

Houk, P., S. Bograd, and R. Van Woesik. 2007. The Transition Zone Chlorophyll Front can trigger Acanthaster planci outbreaks in the Pacific Ocean: Historical confirmation. Journal of Oceanography 63:149-154.

Ish, T., and D. Tomberlin. 2007. Simulation of surface erosion on a logging road in the Jackson Demonstration State Forest. R.B. Standiford et al. (eds.), Proceedings of the Redwood Region Forest Science Symposium: What does the future hold? U.S. Forest Service, General Technical Report PSW-GTR-194.

Jaramillo-Legorreta, A., L. Rojas-Bracho, R.L. Brownell Jr., A.J. Read, R.R. Reeves, K. Ralls, and B.L. Taylor. 2007. Saving the vaquita: immediate action, not more data. Conservation Biology 21(6):1653-1655.

Jefferson, T.A., M.A. Webber, and R.L. Pitman. 2007. Marine mammals of the world. Academic Press. 592 p.

Kawaguchi, S. L.A. Finley, S. Jarman, S.G. Candy, R.M. Ross, L.B. Quetin, V. Siegel, W. Trivelpiece, M. Naganobu, and S. Nicol. 2007. Male krill grow fast and die young. Marine Ecology Progress Series 345:199-210.

Laidig, T. E., J. R. Chess, and D. F. Howard. 2007. Relationship between abundance of juvenile rockfishes (Sebastes spp.) and environmental variables documented off northern California and potential mechanisms for the covariation. Fishery Bulletin (U.S.) 105: 39-48.

Lawson, P.W., E.P. Bjorkstedt, M.W. Chilcote, C.W. Huntington, J.S. Mills, K.M.S. Moore, T.E. Nickelson, G.H. Reeves, H.A. Stout, T.C. Wainwright, and L.A. Weitkamp. 2007. Identification of historical populations of coho salmon (Oncorhynchus kisutch) in the Oregon Coast Evolutionarily Significant Unit. U.S. Department of Commerce, NOAA Technical Memorandum NMFS-NWFSC-79. 126 p.

Lindley, S. T., R. S. Schick, E. Mora, P. B. Adams, J. J. Anderson, S. Greene, C. Hanson, B. P. May, D. R. McEwan, R. B. MacFarlane, C. Swanson, and J. G. Williams. 2007. Framework for assessing viability of threatened and endangered Chinook salmon and steelhead in the Sacramento-San Joaquin Basin. San Francisco Estuary and Watershed Science 5(1):article 4. 26 p.

Lindley, S., and M. Moser. 2007. Acoustic tagging of green sturgeon. P. Sheridan, J.W. Ferguson, and S.L. Downing (eds.), Report of the National Marine Fisheries Service workshop on advancing electronic tag technologies and their use in stock assessments (August 23-25, 2005), p. 7-8. U.S. Department of Commerce, NOAA Technical Memorandum NMFS-F/SPO-82.

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Lipsky, Jessica D. (ed.). 2007. AMLR 2006/2007 field season report: objectives, accomplishments and tentative conclusions. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-409, 156 p.

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LO, NANCY C.H., BEVERLY J. MACEWICZ, AND RICHARD L. CHARTER. 2007. SPAWNING BIOMASS OF PACIFIC SARDINE (SARDINOPS SAGAX) OFF U.S. AND CANADA IN 2007. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-411, 31 p.

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LO, NANCY C.H., BEVERLY J. MACEWICZ, DAVID A. GRIFFITH, AND RICHARD L. CHARTER. 2007. SPAWNING BIOMASS OF PACIFIC SARDINE (SARDINOPS SAGAX) OFF U.S. AND CANADA IN 2006. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-401, 32 p.

Love, M. S., M. M. Yoklavich, B. A. Black, and A. H. Andrews. 2007. Age of black coral (Antipathes dendrochristos) colonies, with notes on associated invertebrate species. Bulletin of Marine Science 80(2):391-400.

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MacCall, Alec D. 2007. Depletion-adjusted average catch. A. Rosenberg, et al. (eds.), Setting annual catch limits for U.S. fisheries: An expert working group report, p. 27-31. Lenfest Ocean Program, Washington, D.C.

Marasco, R.J., D. Goodman, C.B. Grimes, P.W. Lawson, A.E. Punt, and T.J. Quinn II. 2007. Ecosystem-based fisheries management: some practical suggestions. Canadian Journal of Fisheries and Aquatic Sciences 64:928-939.

Miller, A.K., and W.Z. Trivelpiece. 2007. Cycles of Euphausia superba recruitment evident in the diet of pygoscelid penguins and net trawls in the South Shetland Islands, Antarctica. Polar Biology 30:1615-1623.

Mills, K. L., T. Laidig, S. Ralston, and W. J. Sydeman. 2007. Diets of top predators indicate pelagic juvenile rockfish (Sebastes spp.) abundance in the California Current System. Fisheries Oceanography 16(3):273-283.

Morin, Phillip A., and Melissa McCarthy. 2007. Highly accurate SNP genotyping from historical and low-quality samples. Molecular Ecology Notes 7(6):937-946.

Moser, M., and S. Lindley. 2007. Use of Washington estuaries by subadult and adult green sturgeon. Environmental Biology of Fishes 79(3-4):243-253.

Noren, S. R., and E. Edwards. 2007. Physiological and behavioral development in delphinid calves: implications for calf separation and mortality due to tuna purse-seine sets. Marine Mammal Science 23(1):15-29.

Oleson, E.M., J. Calambokidis, J. Barlow, and J.A. Hildebrand. 2007. Blue whale visual and acoustic encounter rates in the Southern California Bight. Marine Mammal Science 23(3):574-597.

Orsi, Joseph A., Jeffrey A. Harding, Suzan S. Pool, Richard D. Brodeur, Lewis J. Haldorson, James M. Murphy, Jamal H. Moss, Edward V. Farley, Jr., Ruston M. Sweeting, John F.T. Morris, Marc Trudel, Richard J. Beamish, Robert L. Emmett, and Emily A. Fergusson. 2007. Epipelagic fish assemblages associated with juvenile Pacific salmon in neritic waters of the California Current and the Alaska Current. C.B. Grimes, et al. (eds.), The ecology of juvenile salmon in the northeast Pacific Ocean: regional comparisons, p. 105-155. American Fisheries Society Symposium 57.

Oswald, J. N., S. Rankin, J. Barlow, and M. O. Lammers. 2007. A tool for real-time acoustic species identification of delphinid whistles. Journal of the Acoustical Society of America 122(1):587-595.

Oxman, D.S., R. Barnett-Johnson, M.E. Smith, A. Coffin, D.L. Miller, R. Josephson, and A.N. Popper. 2007. The effect of vaterite deposition on sound reception, otolith morphology, and inner ear sensory epithelia in hatchery-reared Chinook salmon (Oncorhynchus tshawytscha). Canadian Journal of Fisheries and Aquatic Sciences 64:1469-1478.

Pastor, T., J. C. Garza, A. Aguilar, E. Tounta, and E. Androukaki. 2007. Genetic diversity and differentiation between the two remaining populations of the critically endangered Mediterranean monk seal. Animal Conservation 10(4):461-469.

Pearse, D.E., C.J. Donohoe, and J.C. Garza. 2007. Population genetics of steelhead (Oncorhynchus mykiss) in the Klamath River. Environmental Biology of Fishes 80:377-387.

Pearse, D.E., L. Wooninck, C.A. Dean, and C.J. Garza. 2007. Identification of northeastern Pacific rockfish using multilocus nuclear DNA genotypes. Transactions of the American Fisheries Society 136(1):272-280.

Perrin, W.F., K.M. Robertson, P.J.H. Van Bree, and J.G. Mead. 2007. Cranial description and genetic identity of the holotype specimen of Tursiops aduncus (Ehrenberg, 1832). Marine Mammal Science 23(3):343-357.

Perrin, W.F., M.T. Aquino, M.L.L. Dolar, and M.N.R. Alava. 2007. External appearance of the dwarf spinner dolphin Stenella longirostris roseiventris. Marine Mammal Science 23(4):730.

Perrin, William F., and Koen Van Waerebeek. 2007. The small-cetacean fauna of the west coast of Africa and Macaronesia: diversity and distribution. WATCH: Western African Talks on Cetaceans and their Habitats, Adeje, Tenerife, Spain, 16-20 October 2007. Convention on the Conservation of Migratory Species of Wild Animals, UNEP/CMS-WATCH-Inf.6, 10 p.

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Phillips, A. Jason, Stephen Ralston, Richard D. Brodeur, Toby D. Auth, Robert L. Emmett, Carrie Johnson, and Vidar G. Wespestad. 2007. Recent pre-recruit Pacific hake (Merluccius productus) occurrences in the northern California Current suggest a northward expansion of their spawning area. California Cooperative Oceanic Fisheries Investigations (CalCOFI) Reports 48:215-229.

Piedra, R., E. Vélez, P. Dutton, E. Possardt, and C. Padilla. 2007. Nesting of the leatherback turtle (Dermochelys coriacea) from 1999-2000 through 2003-2004 at Playa Langosta, Parque Nacional Marino Las Baulas de Guanacaste, Costa Rica. Chelonian Conservation and Biology 6:111-116.

Pitcher, K. W., P. F. Olesiuk, R. F. Brown, M. S. Lowry, S. J. Jeffries, J. L. Sease, W. L. Perryman, C. E. Stinchcomb, and L. F. Lowry. 2007. Abundance and distribution of the eastern North Pacific Steller sea lion (Eumetopias jubatus) population. Fishery Bulletin (U.S.) 105:102-115.

Pitman, R. L., and L. Rojas-Bracho. 2007. How now, little cow? Natural History 116(6):28-32.

Pitman, R. L., W. L. Perryman, D. LeRoi, and E. Eilers. 2007. A dwarf form of killer whale in Antarctica. Journal of Mammalogy 88(1):43-48.

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Punt, André E., and Stephen Ralston. 2007. A management strategy evaluation of rebuilding revision rules for overfished rockfish stocks. J. Heifetz, et al. (eds.), Biology, assessment, and management of north Pacific rockfishes, p. 329-351. Alaska Sea Grant no. AK-SG-07-01.

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Ralston, Steve, Patrick Cordue, Devorah Hart, Jim Ianelli, Paul Medley, Brian Culver, and Peter Leipzig. 2007. Canary rockfish STAR Panel report (NOAA Western Regional Center, Seattle, Washington, July 30 - August 3, 2007). Pacific Fishery Management Council, Portland, Oregon. 16 p.

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Ralston, Steve, Patrick Cordue, Devorah Hart, Jim Ianelli, Paul Medley, Brian Culver, and Peter Leipzig. 2007. Arrowtooth flounder STAR Panel report (NOAA Western Regional Center, Seattle, Washington, July 30 - August 3, 2007). Pacific Fishery Management Council, Portland, Oregon. 12 p.

Rankin, S., and J. Barlow. 2007. Sounds recorded in the presence of Blainville’s beaked whales, Mesoplodon densirostris, near Hawai’I (L). Journal of the Acoustical Society of America 122(1):42-45.

Rankin, S., J. Oswald, J. Barlow, and M. Lammers. 2007. Patterned burst-pulse vocalizations of the northern right whale dolphin, Lissodelphis borealis. Journal of the Acoustical Society of America 121(2):1213-1218.

Rankin. S., T. F. Norris, M. A. Smultea, C. Oedekoven, A. M. Zoidis, E. Silva, and J. Rivers. 2007. A visual sighting and acoustic detections of minke whales, Balaenoptera acutorostrata (Cetacea: Balaenopteridae), in nearshore Hawaiian waters. Pacific Science 61(3):395-398.

Rasmussen, K., D. M. Palacios, J. Calambokidis, M. T. Sabori´o, L. Dalla Rosa, E. R. Secchi, G. H. Steiger, J. M. Allen, and G. S. Stone. 2007. Southern Hemisphere humpback whales wintering off Central America: insights from water temperature into the longest mammalian migration. Biology Letters 3(3):302-305.

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Robertson, K.M., C.A. LeDuc, R.G. LeDuc, and P.A. Morin. 2007. Extraction of DNA from formalin-fixed cetacean tissues. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-400, 17 p.

Sakuma, K. M., S. Ralston, and D. A. Roberts. 2007. High-frequency patterns in abundance of larval Pacific hake, Merluccius productus, and rockfish, Sebastes spp., at a single fixed station off central California. Fisheries Oceanography 16(4):383-394.

Schick, Robert S., and Steven T. Lindley. 2007. Directed connectivity among fish populations in a riverine network. Journal of Applied Ecology 44(6):1116-1126.

Seeb, L.W., A. Antonovich, M.A. Banks, T.D. Beacham, M.R. Bellinger, S.M. Blankenship, M.R. Campbell, N.A. Decovich, J.C. Garza, C.M. Guthrie III, T.A. Lundrigan, P. Moran, S.R. Narum, J.J. Stephenson, K.J. Supernault, D.J. Teel, W.D. Templin, et al. 2007. Development of a standardized DNA database for Chinook salmon. Fisheries 32:540-552.

Seminoff, J.A., and P.H. Dutton. 2007. Leatherback turtles (Dermochelys coriacea) in the Gulf of California: distribution, demography, and human interactions. Chelonian Conservation and Biology 6:137-141.

Snover, M.L., L. Avens, and A.A. Hohn. 2007. Back-calculating length from skeletal growth marks in loggerhead sea turtles Caretta caretta. Endangered Species Research 3(1):95-104.

Sogard, Susan M. 2007. The ecology of marine fishes, California and adjacent waters [book review]. Fisheries 32(3):145-146.

Spies, I.B., E.C. Anderson, K. Naish, and P. Bentzen. 2007. Evidence for the existence of a native population of sockeye salmon (Oncorhynchus nerka) and subsequent introgression with introduced populations in a Pacific Northwest watershed. Canadian Journal of Fisheries and Aquatic Sciences 64:1209-1221.

Taylor, B. L., M. Martinez, T. Gerodette, J. Barlow, and Y. N. Horvat. 2007. Lessons from monitoring trends in abundance of marine mammals. Marine Mammal Science 23(1):157-175.

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Thomson, C., D. VenTresca, and D. Colpo. 2007. Logbook pilot program for California’s nearshore groundfish fishery: results and lessons learned. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-408, 29+2 p.

Tomberlin, D., and T. Ish. 2007. When is logging road erosion worth monitoring? Proceedings of the International Mountain Logging and 13th Pacific Northwest Skyline Symposium (April 1-6, 2007, Corvallis, Oregon), p. 239-244. Oregon State University, College of Forestry, Corvallis, Oregon. (CD-ROM).

Tomberlin, David, and Garth Holloway. 2007. Trip-level analysis of efficiency changes in Oregon's deepwater trawl fishery. Fondazione Eni Enrico Mattei, Nota di Lavoro (Working Paper) 86.2007. (17 p.).

Trites, A.W., A.J. Miller, H.D.G. Maschner, et al. 2007. Bottom-up forcing and the decline of Steller sea lions (Eumetopias jubatus) in Alaska: assessing the ocean climate hypothesis. Fisheries Oceanography 16(1): 46-67.

Trivelpiece, W.Z., S. Buckelew, C. Reiss, and S.G. Trivelpiece. 2007. The winter distribution of chinstrap penguins from two breeding sites in the South Shetland Islands of Antarctica. Polar Biology 30:1231-1237.

Trudel, Marc, Mary E. Thiess, Cynthia Bucher, Edward V. Farley Jr., R. Bruce MacFarlane, Edmundo Casillas, Joseph Fisher, John F. T. Morris, James M. Murphy, and David W. Welch. 2007. Regional variation in the marine growth and energy accumulation of juvenile Chinook salmon and coho salmon along the west coast of North America. C. B. Grimes et al. (eds.), The ecology of juvenile salmon in the northeast Pacific Ocean: regional comparisons. American Fisheries Society Symposium 57:205-232.

Turvey, S.T., R.L. Pitman, B.L. Taylor, J. Barlow, T. Akamatsu, L.A. Barrett, X. Zhao, R.R. Reeves, B.S. Stewart, K. Wang, Z. Wei, X. Zhang, L.T. Pusser, M. Richlen, J.R. Bandon, and D. Wang. 2007. First human-caused extinction of a cetacean species? Biology Letters 3(5):537-540.

Walters, C.J., R. Hilborn, and R. Parrish. 2007. An equilibrium model for predicting the efficacy of marine protected areas in coastal environments. Canadian Journal of Fisheries and Aquatic Sciences 64:1009-1018.

Waples, R.S., P.B. Adams, J. Bohnsack, and B.L. Taylor. 2007. A biological framework for evaluating whether a species is threatened or endangered in a significant portion of its range. Conservation Biology 21(4):964-974.

Waples, Robin S., Peter B. Adams, James Bohnsack, and Barbara L. Taylor. 2007. Normativity redux. Conservation Biology 21(6):1649-1650.

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Watson, W., S. M. Manion, and R. L. Charter. 2007. Ichthyoplankton and station data for oblique (bongo net) plankton tows taken during a survey of shallow coastal waters of the Southern California Bight in 2004 and 2005. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-410, 63 p.

Wells, B. K., C. B. Grimes, and J. B. Waldvogel. 2007. Quantifying the effects of wind, upwelling, curl, sea surface temperature and sea level height on growth and maturation of a California Chinook salmon (Oncorhynchus tshawytscha) population. Fisheries Oceanography 16(4):363-382.

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WILLIAMS, J.G., J.J. ANDERSON, S. GREENE, C. HANSON, S.T. LINDLEY, A. LOW, B.P. MAY, D. McEWAN, M.S. MOHR, R.B. MacFARLANE, AND C. SWANSON. 2007. MONITORING AND RESEARCH NEEDED TO MANAGE THE RECOVERY OF THREATENED AND ENDANGERED CHINOOK AND STEELHEAD IN THE SACRAMENTO-SAN JOAQUIN BASIN. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-399, 11 p.

Yoklavich, M.M., M.S. Love, and K.A. Forney. 2007. A fishery-independent assessment of an overfished rockfish stock, cowcod (Sebastes levis), using direct observations from an occupied submersible. Canadian Journal of Fisheries and Aquatic Sciences 64:1795-1804.

2006

Aguilar, A. 2006. Analysis of Fst outliers at allozyme loci in Pacific salmon: implications for natural selection. Environmental Biology of Fishes 76(2-4):329-339.

Aguilar, A., and J. C. Garza. 2006. A comparison of variability and population structure for major histocompatibility complex and microsatellite loci in California coastal steelhead (Oncorhynchus mykiss Walbaum). Molecular Ecology 15(4): 923-937.

Allen, L. G., M. M. Yoklavich, G. M. Cailliet, and M. H. Horn. 2006. Bays and estuaries. L. G. Allen, D. J. Pondella, and M. H. Horn (eds.), The ecology of marine fishes: California and adjacent waters, p. 119-148. University of California Press.

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AMBROSE, DAVID A., RICHARD L. CHARTER, SUSAN M. MANION. 2006. ICHTHYOPLANKTON AND STATION DATA FOR SURFACE (MANTA) AND OBLIQUE (BONGO) PLANKTON TOWS FOR CALIFORNIA COOPERATIVE OCEANIC FISHERIES INVESTIGATIONS SURVEY CRUISES IN 2005. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-392, 125 p.

Anderson, E. C., and J. C. Garza. 2006. The power of single-nucleotide polymorphisms for large-scale parentage inference. Genetics 172(4):2567-2582.

Armsworth, P. R., C. V. Kappel, F. Micheli, and E. P. Bjorkstedt. 2006. Working seascapes. D. D. Goble, J. M. Scott, and F. W. Davis (eds.), The Endangered Species Act at Thirty, vol. 2: Conserving biodiversity in human-dominated landscapes, p. 244-255. Island Press.

Armsworth, P. R., C. V. Kappel, F. Micheli, and E. P. Bjorkstedt. 2006. Marine species. D. D. Goble, J. M. Scott, and F. W. Davis (eds.), The Endangered Species Act at Thirty, vol. 1: Renewing the conservation promise, p. 36-44. Island Press.

Baird, R. W., D. J. McSweeney, C. Bane, J. Barlow, D. R. Salden, L. K. Antoine, R. G. LeDuc, and Daniel L. Webster. 2006. Killer whales in Hawaiian waters: Information on population identity and feeding habits. Pacific Science 60(4):523-530.

Baird, Robin W., Daniel L. Webster, Daniel J. McSweeney, Allan D. Ligon, Gregory S. Schorr, and Jay Barlow. 2006. Diving behaviour of Cuvier's (Ziphius cavirostris) and Blainville's (Mesoplodon densirostris) beaked whales in Hawai'i. Canadian Journal of Zoology 84(8):1120-1128.

Ballance, L. T., R. L. Pitman, and P. C. Fiedler. 2006. Oceanographic influences on seabirds and cetaceans of the eastern tropical Pacific: A review. Progress in Oceanography 69:360-390.

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BALTZ, KENNETH A., KEITH M. SAKUMA, STEPHEN RALSTON. 2006. THE PHYSICAL OCEANOGRAPHY OFF THE CENTRAL CALIFORNIA COAST DURING MAY-JUNE 2001: A SUMMARY OF CTD AND OTHER HYDROGRAPHIC DATA FROM YOUNG OF THE YEAR JUVENILE ROCKFISH SURVEYS. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-395, 83 p.

Barlow, J. 2006. Cetacean abundance in Hawaiian waters estimated from a summer/fall survey in 2002. Marine Mammal Science 22(2):446-464.

Barlow, J. and R. Gisiner. 2006. Mitigating, monitoring and assessing the effects of anthropogenic sound on beaked whales. Journal of Cetacean Research and Management 7(3):239-249.

Barlow, J., M. Ferguson, W. F. Perrin, L. Ballance, T. Gerrodette, G. Joyce, C. D. MacLeod, K. Mullin, D. L. Palka, and G. Waring. 2006. Abundance and density of beaked and bottlenose whales (family ziphiidae). Journal of Cetacean Research and Management 7(3):263-270.

Baskett, M., M. Yoklavich, and M. Love. 2006. Predation, competition, and the recovery of overexploited fish stocks in marine reserves. Canadian Journal of Fisheries and Aquatic Sciences 63(6):1214-1229.

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BOUGHTON, DAVID A. AND ET AL. 2006. STEELHEAD OF THE SOUTH-CENTAL/SOUTHERN CALIFORNIA COAST: POPULATION CHARACTERIZATION FOR RECOVERY PLANNING. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-394, 116 p.

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BOUGHTON, DAVID A., AND MATTHEW GOSLIN. 2006. POTENTIAL STEELHEAD OVER-SUMMERING HABITAT IN THE SOUTH-CENTRAL/SOUTHERN CALIFORNIA COAST RECOVERY DOMAIN: MAPS BASED ON THE ENVELOPE METHOD. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-391, 36 p.

Bradford, A. L., P. R. Wade, D. W. Weller, A. M. Burdin, Y. V. Ivashchenko, G. A. Tsidulko, G. R. VanBlaricom, R. L. Brownell Jr. 2006. Survival estimates of western gray whales Eschrichtius robustus incorporating individual heterogeneity and temporary emigration. Marine Ecology Progress Series 315:293-307.

Brierley, A. S., R. A. Saunders, D. G. Bone, E. J. Murphy, P. Enderlein, S. G. Conti, and David A. Demer. 2006. Use of moored acoustic instruments to measure short-term variability in abundance on Antarctic krill. Limnology and Oceanography Methods 4:18-29.

Brodeur, R. D., S. Ralston, R. L. Emmett, M. Trudel, T. D. Auth, and A. J. Phillips. 2006. Anomalous pelagic nekton abundance, distribution, and apparent recruitment in the northern California Current in 2004 and 2005. Geophysical Research Letters 33:L22S08. 5 p. (doi:10.1029/2006GL026614).

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Butler, J., M. Neuman, D. Pinkard, R. Kvitek, and G. Cochrane. 2006. The use of multibeam sonar mapping techniques to refine population estimates of the endangered white abalone (Haliotis sorenseni). Fishery Bulletin (U.S.) 104:521-532.

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CARRETTA, JAMES V., KARIN A. FORNEY, MARCIA M. MUTO, JAY BARLOW, JASON D. BAKER, BRAD HANSON, AND MARK S. LOWRY, with contributions from Dale Sweetnam, Chris Yates, Don Petersen, and Joe Cordaro. 2006. U.S. PACIFIC MARINE MAMMAL STOCK ASSESSMENTS: 2005. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-388, 317 p.

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Hewitt, R. P., and D. A. Demer. 2005. AMLR program: Evidence for continued decline in krill biomass density from acoustic surveys conducted in the vicinity of the South Shetland Islands during the 1998-1999 austral summer. Antarctic Journal of the United States 33:146-151.

Hewitt. R. P., and D. A. Demer. 2005. AMLR program: Temporal and spatial variability of Antarctic krill density near South Shetland Islands as estimated from acoustic surveys. Antarctic Journal of the United States 33:83-89.

Hinke, J. T., D. G. Foley, C. Wilson, and G. M. Watters. 2005. Persistent habitat use by Chinook salmon Oncorhynchus tshawytscha in the coastal ocean. Marine Ecology Progress Series 304:207-220.

Hinke, J. T., G. M. Watters, G. W. Boehlert, and P. Zedonis. 2005. Ocean habitat use in autumn by chinook salmon in coastal waters of Oregon and California. Marine Ecology Progress Series 285:181-192.

Holloway, G., D. Tomberlin, and X. Irz. 2005. Hierarchical analysis of production efficiency. R. Scarpa and A. Alberini (eds.), Applications of Simulation Methods in Environmental and Resource Economics, chapter 9. Springer Publishing, Dortrecht, Netherlands.

Holm-Hansen, O., M. Kahru, and C. D. Hewes. 2005. Deep chlorophyll a maxima (DCMs) in pelagic Antarctic waters. II. Relation to bathymetric features and dissolved iron concentrations. Marine Ecology Progress Series 297:71-81.

Hsieh, C., C. Reiss, W. Watson, M. J. Allen, J. R. Hunter, R. N. Lea, R. H. Rosenblatt, P. E. Smith, and G. Sugihara. 2005. A comparison of long-term trends and variability in populations of larvae of exploited and unexploited fishes in the Southern California region: A community approach. Progress in Oceanography 67:160-185.

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Jacobson, L. D., S. J. Bograd, R. H. Parrish, R. Mendelssohn, and F. B. Schwing. 2005. Biomass and environmental effects on surplus production in California sardine (Sardinops sagax). Canadian Journal of Fisheries and Aquatic Sciences 62:1782-1796.

Jones, C. D. 2005. AMLR program: Standing stock biomass of eight species of finfish around the South Orkney Islands. Antarctic Journal of the United States 33:152-157.

Jones, C. D., K.-H. Kock, and S. Wilhelms. 2005. AMLR program: Standing stock biomass of six species of finfish around Elephant Island and the lower South Shetland Islands from the 1998 U.S. AMLR bottom trawl survey. Antarctic Journal of the United States 33:129-133.

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Kock, Karl-Hermann, and Christopher D. Jones. 2005. Fish stocks in the Southern Scotia Arc region—a review and prospects for future research. Reviews in Fisheries Science 13(2):75-108.

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LARESE, JASON P. 2005. USING LIDAR TO DETECT TUNA SCHOOLS UNASSOCIATED WITH DOLPHINS IN THE EASTERN TROPICAL PACIFIC, A REVIEW AND CURRENT STATUS. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-378, 7 p.

Leising, A. W., J. P. Pierson, C. Halsband-Lenk, R. Horner, and J. Postel. 2005. Copepod grazing during spring blooms: can Pseudocalanus newmani induce trophic cascades? Progress in Oceanography 67:406-421.

Leising, A. W., J. P. Pierson, C. Halsband-Lenk, R. Horner, and J. Postel. 2005. Copepod grazing during spring blooms: does Calanus pacificus avoid harmful diatoms? Progress in Oceanography 67:384-405.

Leising, A. W., J. P. Pierson, S. Cary, and B. Frost. 2005. Copepod foraging and predation risk within the surface layer during nighttime feeding forays. Journal of Plankton Research 27:981-1001.

Leising, A. W., R. Horner, J. P. Pierson, C. Halsband-Lenk, and J. Postel. 2005. The balance between microzooplankton grazing and phytoplankton growth in a highly productive fjord. Progress in Oceanography 67:366-383.

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Loeb, V., and W. A. Armstrong. 2005. AMLR program: Salps and other zooplankton in the Elephant Island area during austral summer 1999. Antarctic Journal of the United States 33:139-145.

Loeb, V., V. Siegel, and W. A. Armstrong. 2005. AMLR program: The zooplankton assemblage sampled during austral summer 1998 compared to those sampled in 1993 to 1997. Antarctic Journal of the United States 33:107-114.

Lowry, M. S., and K. A. Forney. 2005. Abundance and distribution of California sea lions (Zalophus californianus) in central and northern California during 1998 and summer 1999. Fishery Bulletin (U.S.) 103:331-343.

MacCall, A., H. Batchelder, J. King, D. Mackas, N. Mantua, G. McFarlane, I. Perry, J. Schweigert, and F. Schwing. 2005. Recent ecosystem changes in the California Current. J.R. King (ed.), Report of the study group on fisheries and ecosystem responses to recent regime shifts. PICES Scientific Report 28: Appendix 2, p. 65-86.

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Miller, A. J., E. Di Lorenzo, D. J. Neilson, H. J. Kim. A. Capotondi, M. Alexander, S. J. Bograd, F. B. Schwing, R. Mendelssohn, K. Hedstrom, and D. L. Musgrave. 2005. Interdecadal changes in mesoscale eddy variance in the Gulf of Alaska circulation: Implications for the Steller sea lion decline. Atmosphere-Ocean 43(3):231-240.

Moser, H. G., and W. Watson. 2005. Myctophidae: Lanternfishes. W. J. Richards (ed.), Early stages of Atlantic fishes: an identification guide for the western central north Atlantic, p. 473-579. CRC Press, Boca Raton.

Moser, H. G., and W. Watson. 2005. Order Myctophiformes. W. J. Richards (ed.), Early stages of Atlantic fishes: an identification guide for the western central north Atlantic, p. 461. CRC Press, Boca Raton.

Moser, H. G., and W. Watson. 2005. Neoscopelidae: Blackchins. W. J. Richards (ed.), Early stages of Atlantic fishes: an identification guide for the western central north Atlantic, p. 463-471. CRC Press, Boca Raton.

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O'Hanley, J. R., and D. Tomberlin. 2005. Optimizing the removal of small fish passage barriers. Enviornmental Modeling and Assessment 10(2):85-98.

Palacios, D. M., and S. J. Bograd. 2005. A census of Tehuantepec and Papagayo eddies in the northeastern tropical Pacific. Geophysical Research Letters 32, L23606, doi:10.1029/2005GL024324.

Pierson, J. J., A. W. Leising, C. Halsband-Lenk, and N. Firm. 2005. Vertical distribution and abundance of Calanus pacificus and Pseudocalanus newmani in relation to chlorophyll a concentrations in Dabob Bay, Washington. Progress in Oceanography 67:349-365.

Pierson, J. J., C. Halsband-Lenk, and A. W. Leising. 2005. Reproductive success of Calanus pacificus during diatom blooms in Dabob Bay, Washington. Progress in Oceanography 67:314-331.

Piner, K. R., M. A. Haltuch, and J. R. Wallace. 2005. Preliminary use of oxygen stable isotopes and the 1983 El Niño to assess the accuracy of aging black rockfish (Sebastes melanops). Fishery Bulletin (U.S.) 103:553-558.

Pinkard, D. R., D. M. Kocak, and J. B. Butler. 2005. Use of a video and laser system to quantify transect area for remotely operated vehicle (ROV) rockfish and abalone surveys. Proceedings, MTS/IEEE Oceans 2005, Washington, DC.

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PIPAL, KERRIE A. 2005. SUMMARY OF MONITORING ACTIVITIES FOR ESA-LISTED SALMONIDS IN CALIFORNIA'S CENTRAL VALLEY. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-373, 208 p.

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Smith, P. E. 2005. A history of proposals for subpopulation structure in the Pacific sardine (Sardinops sagax) population off Western North America. California Cooperative Oceanic Fisheries Investigations (CalCOFI) Reports 46:75-82.

Smith, S. E. 2005. Leopard shark mating observed off La Jolla, California. California Fish and Game 91(1):128-135.

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Watson, W., H. J. Walker Jr., D. G. Smith, C. Thacker, and G. P. Owen. 2005. Order Microdesmidae: Wormfishes. W. J. Richards (ed.), Early stages of Atlantic fishes: an identification guide for the western central north Atlantic, p. 2089-2103. CRC Press.

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WATSON, WILLIAM, RICHARD L. CHARTER, AND SUSAN M. MANION. 2005. ICHTHYOPLANKTON AND STATION DATA FOR SURFACE (MANTA) AND OBLIQUE (BONGO) TOWS TAKEN FOR CALIFORNIA COOPERATIVE OCEANIC FISHERIES INVESTIGATIONS SURVEY CRUISES IN 2004. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-384, 123 p.

Watters, G.M., J.T. Hinke, K. Reid, and S. Hill. 2005. A krill-predator-fishery model for evaluating candidate management procedures. CCAMLR Working Group on Ecosystem Monitoring and Management, Document no. WG-EMM-05/13. 55 p.

Wilson, C., and V. J. Coles. 2005. Global climatological relationships between satellite biological and physical observations and upper ocean properties. Journal of Geophysical Research 110, C10001, doi:10.1029/2004JC002724.

Yoklavich, M., and M. Love. 2005. Christmas tree corals: a new species discovered off southern California. Journal of Marine Education 21(4):27-30.

2004

Allen, S., R. Carlson, and C. Thomson (eds.). 2004. Proceedings of the Salmon Habitat Restoration Cost Workshop. Pacific States Marine Fisheries Commission, Portland, Oregon.

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APPLER, JASON, JAY BARLOW, SHANNON RANKIN. 2004. MARINE MAMMAL DATA COLLECTED DURING THE OREGON, CALIFORNIA AND WASHINGTON LINE-TRANSECT EXPEDITION (ORCAWALE) CONDUCTED ABOARD THE NOAA SHIPS MCARTHUR AND DAVID STARR JORDAN, JULY - DECEMBER 2001. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-359, 32 p.

Archer, F., T. Gerrodette, S. Chivers, and A. Jackson. 2004. Annual estimates of the unobserved incidental kill of pantropical spotted dolphin (Stenella attenuata attenuata) calves in the tuna purse-seine fishery of the eastern tropical Pacific. Fishery Bulletin (U.S.) 102:233-244.

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BARLOW, JAY, R. GENTRY. 2004. REPORT OF THE NOAA WORKSHOP ON ANTHROPOGENIC SOUND AND MARINE MAMMALS, 19-20 FEBRUARY 2004. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-361, 28 p.

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BARLOW, JAY, SHANNON RANKIN, ELIZABETH ZELE, JASON APPLER. 2004. MARINE MAMMAL DATA COLLECTED DURING THE HAWAIIAN ISLANDS CETACEAN AND ECOSYSTEM ASSESSMENT SURVEY (HICEAS) CONDUCTED ABOARD THE NOAA SHIPS MCARTHUR AND DAVID STARR JORDAN, JULY-DECEMBER 2002. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-362, 39 p.

Bessey, C., R.H. Devlin, N.R. Liley, and C.A. Biagi. 2004. Reproductive performance of growth-enhanced transgenic coho salmon. Transactions of the American Fisheries Society 133(5):1205-1220.

Bograd, S.J. 2004. California Current. Marine Ecosystems of the North Pacific, PICES Special Publication no. 1, p. 177-191.

Bograd, S.J., D.G. Foley, F.B. Schwing, C. Wilson, R.M. Laurs, J.J. Polovina, E.A. Howell, and R.E. Brainard. 2004. On the seasonal and interannual migrations of the Transition Zone Chlorophyll Front. Geophysical Research Letters 31(17):L17204, doi:10.1029/2004GL020637.

Brandon, M. A., M. Naganobu, D. A. Demer, P. Chernyshkov, P. N. Trathan, S. E. Thorpe, T. Kameda, O. A. Berezhinskiy, E. J. Hawker, and S. Grant. 2004. Physical oceanography in the Scotia Sea during the CCAMLR 2000 survey, austral summer 2000. Deep-Sea Research II 51:1301-1321.

Brodeur, R. D., J. P. Fisher, D. J. Teel, R. L. Emmett, E. Casillas, and T. W. Miller. 2004. Juvenile salmonid distribution, growth, condition, origin, and environmental and species associations in the Northern California Current. Fishery Bulletin (U.S.) 102:25-46.

Calambokidis, J., and J. Barlow. 2004. Abundance of blue and humpback whales in the eastern North Pacific estimated by capture-recapture and line-transect methods. Marine Mammal Science 20(1):63-85.

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CARRETTA, JAMES V., KARIN A. FORNEY, MARCIA M. MUTO, JAY BARLOW, JASON D. BAKER, AND MARK S. LOWRY. 2004. U.S. PACIFIC MARINE MAMMAL STOCK ASSESSMENTS: 2003. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-358, 291 p.

Coles, V.J., C. Wilson, and R.R. Hood. 2004. Remote sensing of new production fuelled by nitrogen fixation. Geophysical Research Letters 31(6):L06301, doi:10.1029/2003GL019018.

Dalton, M. G., and S. Ralston. 2004. The California rockfish conservation area and groundfish trawlers at Moss Landing harbor. Marine Resource Economics 19(1):67-83.

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DANIL, KERRI, KELLY M. ROBERTSON, SUSAN J. CHIVERS. 2004. AN EVALUATION OF USING ENHANCED DIGITAL MICROSCOPY TO ESTIMATE AGES OF SHORT-BEAKED COMMON DOLPHINS (Delphinus delphis). U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-365, 25 p.

Demer, D. A. 2004. An estimate of error for the CCAMLR 2000 survey estimate of krill biomass. Deep-Sea Research II 51:1237-1251.

Dick, E. J. 2004. Beyond 'lognormal versus gamma': discrimination among error distributions for generalized linear models. Fisheries Research 70:351-366.

Flores, H. K.-H. Kock, S. Wilhelms, and C. D. Jones. 2004. Diet of two icefish species from the Southern Shetland Islands and Elephant Island, Champsocepalus gunnari and Chaenocephalus aceratus. Polar Biology 27:119-129.

Garza, J. C., L. Gilbert-Horvath, J. Anderson, T. Williams, B. Spence, and H. Fish. 2004. Population structure and history of steelhead trout in California. J. Irvine et al. (eds.), Workshop on Application of Stock Identification in Defining Marine Distribution and Migration of Salmon (Honolulu, Hawaii, USA, November 1-2, 2003). North Pacific Anadromous Fish Commission (NPAFC), Technical Report 5:129-131.

Hayes, S. A., M. H. Bond, C. V. Hanson, and R. B. MacFarlane. 2004. Interactions between endangered wild and hatchery salmonids: can the pitfalls of artificial propagation be avoided in small coastal streams? Journal of Fish Biology 65 (supp. A):101-121.

Herrick, S. F., D, Squires, and C. A. Tisdell. 2004. Economic benefits of dolphins in the United States eastern tropical Pacific purse-seine tuna industry. Environmental and Resource Economics 28(4):451-468.

Hewitt, R. P., G. Watters, P. N, Trathan, J. P. Croxall, M. E. Goebel, D. Ramm, K. Reid, W. Z. Trivelpiece, and J. L. Watkins. 2004. Options for allocating the precautionary catch limit for krill among small-scale management units in the Scotia Sea. CCAMLR Science 11:81-97.

Hewitt, R. P., J. Watkins, M. Naganobu, V. Sushin, A. S. Brierley, D. A. Demer, S. Kasatkina, Y. Takao, C. Goss, A. Malyshko, M. Brandon, S. Kawaguchi, V. Siegel, P. Trathan, J. Emery, I. Everson, and D. Miller. 2004. Biomass of Antarctic krill in the Scotia Sea in January/February 2000 and its use in revising an estimate of precautionary yield. Deep-Sea Research II 51:1215-1236.

Hewitt, R. P., S. Kim, M. Naganobu, M. Gutierrez, D. Kang, Y. Takao, J. Quinones, Y.-H. Lee, H.-C. Shin, S. Kawaguchi, J. H. Emery, D. A. Demer, and V. J. Loeb. 2004. Variation in the biomass density and demography of Antarctic krill in the vicinity of the South Shetland Islands during the 1999/2000 austral summer. Deep-Sea Research II 51:1411-1419.

Hinke, J. T., I. C. Kaplan, K. Aydin, G. M. Watters, R. J. Olson, and J. F. Kitchell. 2004. Visualizing the food-web effects of fishing for tunas in the Pacific Ocean. Ecology and Society 9(1):10. [online] URL: http://www.ecologyandsociety.org/vol9/iss1/art10 .

Holm-Hansen, O., M. Kahru, C.D. Hewes, S. Kawaguchi, T. Kameda, V.A. Sushin, I. Krasovski, J. Priddle, R. Korb, R. P. Hewitt, and B. G. Mitchell. 2004. Temporal and spatial distribution of chlorophyll-a in surface waters of the Scotia Sea as determined by both shipboard measurements and satellite data. Deep-Sea Research II 51:1323-1332.

Holm-Hansen, O., M. Naganobu, S. Kawaguchi, T. Kameda, I. Krasovski, P. Tchernyshkov, J. Priddle, R. Korb, M. Brandon, D. Demer, R. P. Hewitt, M. Kahru, and C. D. Hewes. 2004. Factors influencing the distribution, biomass, and productivity of phytoplankton in the Scotia Sea and adjoining waters. Deep-Sea Research II 51:1333-1350.

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JACKSON, ALAN, TIM GERRODETTE, SUSAN J. CHIVERS, MORGAN LYNN, PAULA OLSON, SHANNON RANKIN. 2004. MARINE MAMMAL DATA COLLECTED DURING A SURVEY IN THE EASTERN TROPICAL PACIFIC ABOARD THE NOAA SHIPS McARTHUR II AND DAVID STARR JORDAN, JULY 29 - DECEMBER 10, 2003. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-366, 98 p.

Jones, C. D., and D. Ramm. 2004. The commercial harvest of krill in the southwest Atlantic before and during the CCAMLR 2000 Survey. Deep-Sea Research II 51:1421-1434.

Kahn, R. G., D. E. Pearson, and E. J. Dick. 2004. Comparison of standard length, fork length, and total length for measuring west coast marine fishes. Marine Fisheries Review 66(1):31-33.

Kasatkina, S.M., C. Goss, J.H. Emery, Y. Takao, F.F. Litvinov, A.P. Malyshko, V.N. Shnar, and O.A. Berezhinsky. 2004. A comparison of net and acoustic estimates of krill density in the Scotia Sea during the CCAMLR 2000 Survey. Deep-Sea Research II 51(12-13):1289-1300.

Kock, K.-H., L. Pshenichnov, C. D. Jones, K. Shust, K. E. Skora, and Zh. A. Frolkina. 2004. Joinville-D'Urville Islands (Subarea 48), a former fishing ground for the spiny icefish (Chaenodraco wilsoni), at the tip of the Antarctic Peninsula revisited. CCAMLR Science 11:1-20.

Kock, K.-H., M. Belchier, and C. D. Jones. 2004. Is the attempt to estimate the biomass of Antarctic fish from a multi-species survey appropriate for all targeted species? Notothenia rossii in the Atlantic Ocean sector revisited. CCAMLR Science 11:141-155.

Lai, N. C., N. Dalton, Y. Y. Lai, C. Kwong, R. Rasmussen, D. Holts, and J. B. Graham. 2004. A comparative echocardiographic assessment of ventricular function in five species of sharks. Comparative Biochemistry and Physiology A 137(3):506-521.

Laidig, T. E., K. M. Sakuma, and J. A. Stannard. 2004. Description and growth of larval and pelagic juvenile pygmy rockfish (Sebastes wilsoni) (family Sebastidae). Fishery Bulletin (U.S.) 102:452-463.

Laurs, R. M., and D. Foley. 2004. The role of satellite remote sensing in NOAA Fisheries. Backscatter 15(2):41-48.

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LEDUC, R. 2004. REPORT OF THE RESULTS OF THE 2002 SURVEY FOR NORTH PACIFIC RIGHT WHALES. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-357, 58 p.

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LINDLEY, S. T., ROBERT S. SCHICK, B. P. MAY, J. J. ANDERSON, S. GREENE, C. HANSON, A. LOW, D. MCEWAN, R. B. MACFARLANE, C. SWANSON, J. G. WILLIAMS. 2004. POPULATION STRUCTURE OF THREATENED AND ENDANGERED CHINOOK SALMON ESUs IN CALIFORNIA'S CENTRAL VALLEY BASIN. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-360, 56 p.

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LIPSKY, JESSICA D. (EDITOR). 2004. AMLR 2003/2004 FIELD SEASON REPORT: OBJECTIVES, ACCOMPLISHMENTS AND TENTATIVE CONCLUSIONS. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-367, 165 p.

Macewicz, B. J., J. R. Hunter, N. C. H. Lo, and E. L. LaCasella. 2004. Fecundity, egg deposition, and mortality of market squid (Loligo opalescens). Fishery Bulletin (U.S.) 102:306-327.

Mason, J.E. 2004. Historical patterns from 74 years of commercial landings from California waters. California Cooperative Oceanic Fisheries Investigations (CalCOFI) Reports 45:180-190.

McGehee, D. E., D. A. Demer, and J. D. Warren. 2004. Zooplankton in the Ligurian Sea: Part I. Characterization of their dispersion, relative abundance and environment during summer 1999. Journal of Plankton Research 26(12):1409-1418.

Mendelssohn, R., F.B. Schwing, and S.J. Bograd. 2004. Nonstationary seasonality of upper ocean temperature in the California Current. Journal of Geophysical Research - Oceans 109(C10):C10015, doi:10.1029/2004JC002330.

Murphy, E. J., S. E. Thorpe, J. L. Watkins, and R. P. Hewitt. 2004. Modeling the krill transport pathways in the Scotia Sea: spatial and environmental connections generating the seasonal distribution of krill. Deep-Sea Research II 51:1435-1456.

Norton, J.G., and J.E. Mason. 2004. Locally and remotely forced environmental influences on California commercial fish and invertebrate landings. California Cooperative Oceanic Fisheries Investigations (CalCOFI) Reports 45:136-145.

O'Corry-Crowe, G. M. 2004. Belugas and DNA: the role of molecular genetics in the study and co-management of an arctic whale. Alaska Beluga Whale Newsletter 7(2):1-8.

Palacios, D.M., S.J. Bograd, R. Mendelssohn, and F.B. Schwing. 2004. Long-term and seasonal trends in stratification in the California Current, 1950-1993. Journal of Geophysical Research - Oceans 109(C10):C10016, doi:10.1029/2004JC002380.

Palacios, Daniel M. 2004. Seasonal patterns of sea-surface temperature and ocean color around the Galápagos: regional and local influences. Deep-Sea Research II 51(1-3):43-57.

Panteleev, G. G., B. de Young, M. Luneva, C. Reiss, and E. V. Semenov. 2004. Modeling the circulation of Western Bank on the Scotian Shelf through sequential application of a variational algorithm and a nonlinear model. Journal of Geophysical Research 109(C2):15000-15012.

Pastor, T., J. C. Garza, P. Allen, W. Amos, and A. Aguilar. 2004. Low genetic variability in the highly endangered Mediterranean monk seal. Journal of Heredity 95(4):291-300.

Pearse, D. E., and K. A. Crandall. 2004. Beyond Fst: analysis of population genetic data for conservation. Conservation Genetics 5:585-602.

Pearson, D. E., and F. R. Shaw. 2004. Sources of age determination errors for sablefish (Anoplopoma fimbria). Fishery Bulletin (U.S.) 102:127-141.

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PERRIN, WILLIAM F. 2004. CHRONOLOGICAL BIBLIOGRAPHY OF THE TUNA-DOLPHIN PROBLEM, 1941-2001. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-356, 194 p.

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PERRIN, WILLIAM F., GALINA E. ZUBTSOVA, ANATOLIY A. KUZMIN. 2004. PARTIAL CATALOG OF CETACEAN OSTEOLOGICAL SPECIMENS IN RUSSIAN MUSEUMS. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-364, 26 p.

Piner, K. R., and S. G. Wischniowski. 2004. Pacific halibut (Hippoglossus stenolepis) chronology of bomb radiocarbon in otoliths from 1944-1981 and a validation of ageing methods. Journal of Fish Biology 64:1060-1071.

Preti, A., S. E. Smith, and D. A. Ramon. 2004. Diet differences in the thresher shark (Alopias vulpinus) during transition from a warm-water regime to a cool-water regime off California-Oregon, 1998-2000. California Cooperative Oceanic Fisheries Investigations (CalCOFI) Reports 45:118-125.

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REEVES, RANDALL R., WILLIAM F. PERRIN, BARBARA L. TAYLOR, C. S. BAKER, AND SARAH L. MESNICK. 2004. REPORT OF THE WORKSHOP ON SHORTCOMINGS OF CETACEAN TAXONOMY IN RELATION TO NEEDS OF CONSERVATION AND MANAGEMENT, APRIL 30–MAY 2, 2004, LA JOLLA, CALIFORNIA. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-363, 94 p.

Reid, Keith, Mark J. Jessopp, Melissa S. Barrett, So Kawaguchi, Volker Siegel, and Mike E. Goebel. 2004. Widening the net: spatio-temporal variability in the krill population structure across the Scotia Sea. Deep-Sea Research II 51(12-13):1275-1287.

Reilly, S., S. Hedley, J. Borberg, R. Hewitt, D. Thiele, J. Watkins, and M. Naganobu. 2004. Biomass and energy transfer to baleen whales in the South Atlantic sector of the Southern Ocean. Deep-Sea Research II 51:1397-1410.

Robson, B. W., M. E. Goebel, J. D. Baker, R. R. Ream, T. R. Loughlin, R. C. Francis, G. A. Antonelis, and D. P. Costa. 2004. Separation of foraging habitat among breeding sites of a colonial marine predator, the northern fur seal (Callorhinus ursinus). Canadian Journal of Zoology 82:20-29.

Rutishauser, M. R., D. P. Costa, M. E. Goebel, and T. M. Williams. 2004. Ecological implications of body composition and thermal capabilities in young Antarctic fur seals (Arctocephalus gazella). Physiological and Biochemical Zoology 77:669-681.

Ryer, C. H., M. L. Ottmar, and E. A. Sturm. 2004. Behavioral impairment after escape from trawl codends may not be limited to fragile fish species. Fisheries Research 66:261-269.

Schwing, F.B., and M.H. Pickett. 2004. Comment on "Anomalous cold water detected along mid-Atlantic coast". Eos, Transactions, American Geophysical Union 85(51):554, doi:10.1029/2004EO510004.

Smith, D. R., J. A. Brown, and N. C. H. Lo. 2004. Application of adaptive sampling to biological populations. W.L. Thompson (ed.), Sampling rare or elusive species: concepts, designs, and techniques for estimating population parameters. Island Press.

Snover, M.L., and A.A. Hohn. 2004. Validation and interpretation of annual skeletal marks in loggerhead (Caretta caretta) and Kemp's ridley (Lepidochelys kempii) sea turtles. Fishery Bulletin (U.S.) 102(4):682-692.

Starr, R. M., V. O'Connell, and S. Ralston. 2004. Movements of lingcod (Ophiodon elongatus) in southeast Alaska: potential for increased conservation and yield from marine reserves. Canadian Journal of Fisheries and Aquatic Sciences 61(7):1083-1094.

Stegmann, P.M. 2004. Characterization of aerosols over the north Atlantic Ocean from SeaWiFS. Deep-Sea Research II 51(10-11):913-925.

Stegmann, P.M. 2004. Remote monitoring of aerosols with ocean colour sensors: then and now. International Journal of Remote Sensing 25(7-8):1409-1413.

Stegmann, P.M., and D.S. Ullman. 2004. Variability in chlorophyll and sea surface temperature fronts in the Long Island Sound outflow region from satellite observations. Journal of Geophysical Research 109:C07S03, doi:10.1029/2003JC001984.

Stephens, A., and A. MacCall. 2004. A multispecies approach to subsetting logbook data for purposes of estimating CPUE. Fisheries Research 70:299-310.

Thomson, C. 2004. Salmon habitat restoration cost workshop: introduction. S. T. Allen, C. Thomson, and R. Carlson, Proceedings of the Salmon Habitat Restoration Cost Workshop, p. 1-2. Pacific States Marine Fisheries Commission, Portland, Oregon.

Thomson, C. 2004. Workshop conclusions and recommendations. S. T. Allen, C. Thomson, and R. Carlson, Proceedings of the Salmon Habitat Restoration Cost Workshop, p. 236-251. Pacific States Marine Fisheries Commission, Portland, Oregon.

Tomberlin, D. 2004. The allocation problem in habitat restoration. S. T. Allen, C. Thomson, and R. Carlson, Proceedings of the Salmon Habitat Restoration Cost Workshop, p. 33-40. Pacific States Marine Fisheries Commission, Portland, Oregon.

Warren, J. D., D. A. Demer, D. E. McGehee, R. Di Mento, and J. F. Borsani. 2004. Zooplankton in the Ligurian Sea: Part II. Exploration of their physical and biological forcing functions during summer 2000. Journal of Plankton Research 26(12):1419-1427.

Watkins, J. L., R. P. Hewitt, M. Naganobu, and V. Sushin. 2004. The CCAMLR 2000 Survey: a multinational, multi-ship biological oceanography survey of the Atlantic sector of the Southern Ocean. Deep-Sea Research II 51:1205-1214.

Watson, W., and H. J. Walker Jr. 2004. The world's smallest vertebrate, Schindleria brevipinguis, a new paedomorphic species in the family Schindleriidae (Perciformes: Gobioidei). Records of the Australian Museum 56(2):139-142.

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Watson, W., and L. L. Robertson. 2004. Development of kelp rockfish, Sebastes atrovirens (Jordan and Gilbert 1880) and brown rockfish, S. auriculatus (Girard 1854) from birth to pelagic juvenile stage, with notes on early larval development of black-and-yellow rockfish, S. chrysomelas ... U.S. Department of Commerce, NOAA Professional Paper NMFS 3. 30p.

Wooninck, Lisa, and Carli Bertrand. 2004. Marine managed areas designated by NOAA Fisheries: a characterization study and preliminary assessment. J.B. Shipley (ed.), Aquatic protected areas as fisheries management tools. American Fisheries Society Symposium 42:89-103.

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2003

AMBROSE, DAVID A., RICHARD L. CHARTER, H. GEOFFREY MOSER. 2003. ICHTHYOPLANKTON AND STATION DATA FOR SURFACE (MANTA) AND OBLIQUE (BONGO) PLANKTON TOWS FOR CALIFORNIA COOPERATIVE OCEANIC FISHERIES INVESTIGATION SURVEY CRUISES IN 2001. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-348, 104 p.

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AMBROSE, DAVID A., RICHARD L. CHARTER, H. GEOFFREY MOSER. 2003. ICHTHYOPLANKTON AND STATION DATA FOR SURFACE (MANTA) AND OBLIQUE (BONGO) PLANKTON TOWS FOR MINI-CALIFORNIA COOPERATIVE OCEANIC FISHERIES INVESTIGATIONS SURVEY CRUISES IN 1997 AND 1998. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-351, 69 p.

Barlow, J., and G. Cameron. 2003. Field experiments show that acoustic pingers reduce marine mammal bycatch in the California drift gillnet fishery. Marine Mammal Science 19(2):265-283.

Bidigare, R. R., C. Benitez-Nelson, C. L. Leonard, P. D. Quay, M. L. Parsons, D. G. Foley, and M. P. Seki. 2003. Influence of a cyclonic eddy on microheterotroph biomass and carbon export in the lee of Hawaii. Geophysical Research Letters 30:1318.

Bograd, S. J., and R. J. Lynn. 2003. Long-term variability in the Southern California Current System. Deep-Sea Research II 50:2355-2370.

Bograd, S. J., and R. J. Lynn. 2003. Anomalous subarctic influence in the southern California Current during 2002. Geophysical Research Letters 30:8020.

Bograd, S. J., D. A. Checkley, and W. S. Wooster. 2003. CalCOFI: a half century of physical, chemical and biological research in the California Current System. Deep-Sea Research II 50:2349-2353.

Brodeur, R. D., W. G. Pearcy, and S. Ralston. 2003. Abundance and distribution patterns of nekton and micronekton in the northern California Current transition zone. Journal of Oceanography 59:515-535.

Browman, H. I., R. D. Vetter, C. A. Rodriguez, J. J. Cullen, R. F. Davis, E. Lynn, and J.-F. St.-Pierre. 2003. Ultraviolet (280-400 nm) induced DNA damage in the eggs and larvae of Calanus finmarchicus G. (Copepoda) and Atlantic cod (Gadus morhua). Photochemistry and Photobiology 77(4):397-404.

Buongiorno, J., S. Zhu, D. Zhang, J. Turner, and D. Tomberlin. 2003. The Global Forest Products Model: structure, estimation, and applications. Academic Press, San Diego. 300 p.

Butler, J. L., L. D. Jacobson, J. T. Barnes, and H. G. Moser. 2003. Biology and population dynamics of cowcod (Sebastes levis) in the southern California Bight. Fishery Bulletin (U.S.) 101:260-280.

Calambokidis, J., and J. Barlow. 2003. Abundance of blue and humpback whales in the eastern North Pacific estimated by capture-recapture and line-transect methods. Marine Mammal Science 20(1):63-85.

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CHARTER, S.R., RICHARD L. CHARTER, H. GEOFFREY MOSER. 2003. ICHTHYOPLANKTON AND STATION DATA FOR SURFACE (MANTA) AND OBLIQUE (BONGO) PLANKTON TOWS FOR CALIFORNIA COOPERATIVE OCEANIC FISHERIES INVESTIGATIONS SURVEY CRUISES IN 2002. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-352, 97 p.

Churnside, J. H., D. A. Demer, and B. Mahmoudi. 2003. A comparison of lidar and echosounder measurements of fish schools in the Gulf of Mexico. ICES Journal of Marine Science 60:147-154.

Clapham, P., J. Barlow, M. Bessinger, T. Cole, D. Mattila, R. Pace, D. Palka, J. Robbins, and R. Seton. 2003. Abundance and demographic parameters of humpback whales from the Gulf of Maine and stock definition relative to the Scotian Shelf. Journal of Cetacean Research and Management 5(1):13-22.

Clapham, P., P. Berggren, S. Childerhouse, N. Friday, T. Kasuya, L. Kell, K-H. Kock, S. Manzanilla, G. di Sciara, W.F. Perrin, A.J. Read, R.R. Reeves, E. Rogan, L. Rojas-Bracho, T.D. Smith, M. Stachowitsch, B.L. Taylor, D.Thiele, P. Wade, R.L. Brownell. 2003. Viewpoint: Whaling as science. Bioscience 53:210-212.

Conti, Stéphane G., and David A. Demer. 2003. Wide-bandwidth acoustical characterization of anchovy and sardine from reverberation measurements in an echoic tank. ICES Journal of Marine Science 60(3):617-624.

Dalebout, M. L., J. B. Ross, C. S. Baker, G. R. C. Anderson, P. B. Best, V. G. Cockcroft, H. L. Hinsz, V. Peddemors, and R. L. Pitman. 2003. Appearance, distribution, and genetic distinctiveness of Longman's beaked whale, Indopacetus pacificus. Marine Mammal Science 19(3):421-461.

DeMartini, E. E., G. T. DiNardo, and H. A. Williams. 2003. Temporal changes in population density, fecundity, and egg size of the Hawaiian spiny lobster (Panulirus marginatus) at Necker Bank, Northwestern Hawaiian Islands. Fishery Bulletin (U.S.) 101:22-31.

Demer, D. A., and S. G. Conti. 2003. Reconciling theoretical versus empirical target strengths of krill: effects of phase variability on the distorted-wave Born approximation. ICES Journal of Marine Science 60:429-434.

Demer, D. A., S. G. Conti, J. De Rosny, and P. Roux. 2003. Absolute measurements of total target strength from reverberation in a cavity. Journal of the Acoustical Society of America 113(3):1387-1394.

Demer, David A., and Stéphane G. Conti. 2003. Validation of the stochastic distorted-wave Born approximation model with broad bandwidth total target strength measurements of Antarctic krill. ICES Journal of Marine Science 60(3):625-635.

Dolar, M. L., W. A. Walker, G. L. Kooyman, and W. F. Perrin. 2003. Comparative feeding ecology of spinner dolphins (Stenella longirostris) and Fraser’s dolphins (Lagenodelphis hosei) in the Sulu Sea. Marine Mammal Science 19(1):1-19.