Berkson, Jim, Luiz Barbieri, Steve Cadrin, Shannon L. Cass-Calay, Andy Cooper, Paul Crone, Martin Dorn, Claudia Friess, Don Kobayashi, Thomas Miller, Wesley S. Patrick, Sarah Pautzke, Stephen Ralston, and Michael Trianni. 2010. Setting allowable biological catch for stocks with reliable catch data only [abstract]. In: Kristan Blackhart (ed.), Proceedings: 11th National Stock Assessment Workshop: Characterization of scientific uncertainty in assessments to improve determination of acceptable biological catches (ABCs); Joint Session of the National Stock and Habitat Assessment Workshops: Incorporating habitat information in stock assessments; and 1st National Habitat Assessment Workshop: Moving towards a national habitat science program (St. Petersburg, Florida, May 17-20, 2010), p. 106. U.S. Department of Commerce, NOAA Technical Memorandum NMFS-F/SPO-112.     View Document Bjorkstedt, Eric P., Ralf Goericke, Sam McClatchie, Ed Weber, William Watson, Nancy Lo, Bill Peterson, Bob Emmett, Jay Peterson, Reginaldo Durazo, Gilberto Gaxiola-Castro, Francisco Chavez, J.T. Pennington, C.A. Collins, John Field, Steve Ralston, Keith Sakuma, Steve J. Bograd, Franklin B. Schwing, Yan Xue, William J. Sydeman, Sarah Ann Thompson, Jarrod A. Santora, John Largier, Chris Halle, Steven Morgan, Sung Yong Kim, Karlina P.B. Merkens, John A. Hildebrand, and Lisa M. Munger. 2010. State of the California Current 2009-2010: Regional variation persists through transition from La Nina to El Nino (and back?). CalCOFI Reports 51:39-69.     View Document Bjorkstedt, Eric P., Steve Ralston, John Field, Xi He, and Robert VanKirk. 2010. Developing recruitment indices for West Coast rockfish using individual-based models and environmentally forces ocean circulation models. Report to NOAA Fisheries and the Environment (FATE) program, Project 09-02. NOAA National Marine Fisheries Service, Silver Spring, Maryland. 2 p.     View Document Bjorkstedt, Eric, and Stephen Ralston. 2010. Insights for stock assessment and empirical prerecruit indices from an environmentally forced individual-based model of early life history stages for west coast rockfishes [abstract]. In: Kristan Blackhart (ed.), Proceedings: 11th National Stock Assessment Workshop: Characterization of scientific uncertainty in assessments to improve determination of acceptable biological catches (ABCs); Joint Session of the National Stock and Habitat Assessment Workshops: Incorporating habitat information in stock assessments; and 1st National Habitat Assessment Workshop: Moving towards a national habitat science program (St. Petersburg, Florida, May 17-20, 2010), p. 108. U.S. Department of Commerce, NOAA Technical Memorandum NMFS-F/SPO-112.     View Document Black, B.A., I. Schroeder, W.J. Sydeman, S.J. Bograd, V. Gertseva, and P. Lawson. 2010. Beyond the spring transition: Winter pre-conditioning of ecosystem dynamics and implications for sentinel species and fisheries. Report to NOAA Fisheries and the Environment (FATE) program, Project 09-03. NOAA National Marine Fisheries Service, Silver Spring, Maryland. 12 p.       Black, Bryan A., Isaac D. Schroeder, William J. Sydeman, Steven J. Bograd, and Peter W. Lawson. 2010. Wintertime ocean conditions synchronize rockfish growth and seabird reproduction in the central California Current ecosystem. Canadian Journal of Fisheries and Aquatic Sciences 67(7):1149-1158.       Blight, Louise K., David G. Ainley, Stephen F. Ackley, Grant Ballard, Tosca Ballerini, Robert L. Brownell Jr., C.-H. Christina Cheng, Mariachiara Chiantore, Daniel Costa, Malcolm C. Coulter, Paul Dayton, Arthur L. Devries, Robert Dunbar, Sylvia Earle, Joseph T. Eastman, Steven D. Emslie, Clive W. Evans, Robert A. Garrott, Stacy Kim, Gerald Kooyman, Amelie Lescroel, Michael Lizotte, Melanie Massaro, Silvia Olmastroni, Paul J. Ponganis, Joellen Russell, Donald B. Siniff, Walker O. Smith Jr., Brent S. Stewart, Ian Stirling, Jay Willis, Peter Wilson, and Eric J. Woehler. 2010. Fishing for data in the Ross Sea. Science 330(6009):1316.       Block, Barbara A., Daniel P. Costa, and Steven J. Bograd. 2010. A view from the ocean from Pacific predators. In: Alasdair D. McIntyre (ed.), Life in the world's oceans: diversity, distribution, and abundance, p. 291-311. Wiley-Blackwell.       Bograd, Steven J., Barbara A. Block, Daniel P. Costa, and Brendan J. Godley. 2010. Biologging technologies: new tools for conservation. Introduction. Endangered Species Research 10:1-7.       Bograd, Steven J., William J. Sydeman, J. Barlow, A. Booth, R.D. Brodeur, J. Calambokidis, F. Chavez, W.R. Crawford, E. Di Lorenzo, R. Durazo, R. Emmett, J. Field, G. Gaxiola-Castro, W. Gilly, R. Goericke, J. Hildebrand, J.E. Irvine, M. Kahru, J.A. Koslow, B. Lavaniegos, M. Lowry, D.L. Mackas, M. Manzano-Sarabia, S.M. McKinnell, B.G. Mitchell, L. Munger, R.I. Perry, W.T. Peterson, S. Ralston, J. Schweigert, A. Suntsov, R. Tanasichuk, A.C. Thomas, and F. Whitney. 2010. Status and trends of the California Current region, 2003-2008. In: Stewart M. McKinnell and Michael J. Dagg (eds.), Marine ecosystems of the north Pacific Ocean, 2003-2008, p. 106-141. PICES Special Publication no. 4.     View Document Boughton, David A. 2010. Some research questions on recovery of steelhead on the south-central and southern California coast. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-467, 14 p.     View Document Boughton, David A. 2010. A forward-looking scientific frame of reference for steelhead recovery on the south-central and southern California coast. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-466, 46 p.       Boughton, David A. 2010. Estimating the size of steelhead runs by tagging juveniles and monitoring migrants. North American Journal of Fisheries Management 30(1):89-101.     View Document Bradford, Amanda L., David W. Weller, Aimee R. Lang, Grigory A. Tsidulko, Alexander M. Burdin, and Robert L. Brownell Jr. 2010. Comparing observations of age at first reproduction in western gray whales to estimates of age at sexual maturity in eastern gray whales. Paper SC/62/BRG2 presented to the International Whaling Commission, Scientific Committee (SC62 meeting, Agadir, Morocco, 2010). 6 p.     View Document Breuer, Eric, Dezhang Chu, George R. Cutter Jr., David A. Demer, Joseph Godlewski, Scott Ferguson, Brad Hanson, Michael Jech, Frank Parrish, Joseph E. Serafy, David Somerton, Charles H. Thompson, and Chris Wilson. 2010. The Advanced Sampling Technology Working Group's recent efforts in improving NMFS' stock and habitat assessment science [abstract]. 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Paper SC/62/BRG24 presented to the International Whaling Commission, Scientific Committee (SC62 meeting, Agadir, Morocco, 2010). 61 p.     View Document Brownell, Robert L. Jr. 2010. Summary gray whale strandings in 2010: California, Oregon, and Washington. Paper SC/62/BRG35 presented to the International Whaling Commission, Scientific Committee (SC62 meeting, Agadir, Morocco, 2010). 3 p.     View Document Butler, John, Kevin Stierhoff, and Melissa Neuman. 2010. On the road to extinction? Monitoring population trends of the endangered white abalone, Haliotis sorenseni [abstract]. 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Mattila, Katherine Ralls, Marcia M. Muto, Deanna Lynch, and Lilian Carswell. 2010. U.S. Pacific marine mammal stock assessments: 2009. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-453, 336 p.       Carrion-Cortez, Javier A., Patricia Zarate, and Jeffrey A. Seminoff. 2010. Feeding ecology of the green sea turtle (Chelonia mydas) in the Galapagos Islands. Journal of the Marine Biological Association of the United Kingdom 90(5):1005-1013.       Cartamil, D., N.C. Wegner, D. Kacev, N. Ben-aderet, S. Kohin, and J.B. Graham. 2010. Movement patterns and nursery habitat of juvenile thresher sharks Alopias vulpinus in the Southern California Bight. Marine Ecology Progress Series 404:249-258.     View Document Charrassin, J.-B., F. Roquet, Y.-H. Park, F. Bailleul, C. Guinet, M. Meredity, K. Nicholls, S. Thorpe, B. McDonald, D.P. Costa, I. Tremblay, M. Goebel, M. Muelbert, M.N. Bester, J. Plotz, H. Bornemann, R. Timmermann, M. Hindell, A. Meijers, R.C. Coleman, I.C. Field, C.M McMahon, S.R. Rintoul, S. Sokolov, L. Boehme, P. Lovell, M.A. Fedak, M. Biuw, O.A. Nost, C. Lydersen, and K.M. Kovacs. 2010. New insights into Southern Ocean physical and biological processes revealed by instrumented elephant seals. Community White Paper 15 (12 p.). In: J. Hall, D.E. Harrison, and D. Stammer (eds.), Proceedings of the OceanObs'09 Conference: Ocean information for society (21-25 September 2009, Venice, Italy), vol. 2. European Space Agency, Publication ESA WPP-306.       Chen, K.-S., P.R. Crone, and C.-C. Hsu. 2010. Reproductive biology of albacore Thunnus alalunga. Journal of Fish Biology 77(1):119-136.       Chen, Tao, Samuel K. Hung, Yongsong Qiu, Xiaoping Jia, and Thomas Jefferson. 2010. Distribution, abundance, and individual movements of Indo-Pacific humpback dolphins (Sousa chinensis) in the Pearl River Estuary, China. Mammalia 74(2):117-125.     View Document Chivers, Susan J., Robin W. Baird, Karen N. Martien, Barbara L. Taylor, Eric Archer, Antoinette M. Gorgone, Brittany L. Hancock, Nicole M. Hedrick, David Matilla, Daniel J. McSweeney, Erin M. Oleson, Carol L. Palmer, Victoria Pease, Kelly M. Robertson, Jooke Robbins, Juan Carlos Salinas, Gregory S. Schorr, Mark Schultz, Janet L. Thieleking, and Daniel L. Webster. 2010. Evidence of genetic differentiation for Hawai'i insular false killer whales (Pseudorca crassidens). U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-458, 44 p.     View Document Chivers, Susan J., Wayne L. Perryman, Nicholas M. Kellar, James V. Carretta, Frederick I. Archer, Jessica V. Redfern, Annette E. Henry, Morgan S. Lynn, Candice Hall, Al Jackson, Gabriela Serra-Valente, Thomas J. Moore, Claire Surrey-Marsden, and Lisa T. Ballance. 2010. Ecosystem survey of Delphinus species cruise report. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-464, 53 p.       Costa, Daniel P., Barbara E. Block, Steven J. Bograd, Michael A. Fedak, and John S. Gunn. 2010. TOPP as a marine life observatory: Using electronic tags to monitor the movements, behaviour and habitats of marine vertebrates. In: Julie Hall, D.E. Harrison, and Detlef Stammer (eds.), Proceedings of OceanObs'09: Sustained ocean observations and information for society (Venice, Italy, 21-25 September 2009), vol. 2: Community white papers. ESA Publication WPP-306.       Costa, Daniel P., Luis A. Huckstadt, Daniel E. Crocker, Birgitte I. McDonald, Michael E. Goebel, and Michael A. Fedak. 2010. Approaches to studying climatic change and its role on the habitat selection of Antarctic pinnipeds. Integrative and Comparative Biology 50(6):1018-1030.       Cox, Martin J., Joseph D. Warren, David A. Demer, George R. Cutter, and Andrew S. Brierley. 2010. Three-dimensional observations of swarms of Antarctic krill (Euphausia superba) made using a multi-beam echosounder. Deep-Sea Research II 57(7-8):508-518.     View Document Cutter, George R., Jr., and David A. Demer. 2010. Multifrequency biplanar interferometric imaging for ultra high resolution three-dimensional imaging of seabed habitat [abstract]. In: Kristan Blackhart (ed.), Proceedings: 11th National Stock Assessment Workshop: Characterization of scientific uncertainty in assessments to improve determination of acceptable biological catches (ABCs); Joint Session of the National Stock and Habitat Assessment Workshops: Incorporating habitat information in stock assessments; and 1st National Habitat Assessment Workshop: Moving towards a national habitat science program (St. Petersburg, Florida, May 17-20, 2010), p. 123. U.S. Department of Commerce, NOAA Technical Memorandum NMFS-F/SPO-112.       Cutter, George R., Jr., and David A. Demer. 2010. Multifrequency biplanar interferometric imaging. IEEE Geoscience and Remote Sensing Letters 7(1):171-175.       Cutter, George R., Jr., Laurent Berger, and David A. Demer. 2010. A comparison of bathymetry mapped with the Simrad ME70 multibeam echosounder operated in bathymetric and fisheries modes. ICES Journal of Marine Science 67(6):1301-1309.       Danil, K. 2010. Necropsy trailer at SWFSC. California Marine Mammal Stranding Network Newsletter 2(2):6.       Danil, K. 2010. Case study: NMFS Southwest Fisheries Science Center. California Marine Mammal Stranding Network Newsletter 2(2):2.       Danil, Kerri, Susan J. Chivers, Mike D. Henshaw, Janet L. Thieleking, Risa Daniels, and Judy A. St. Leger. 2010. Cetacean strandings in San Diego County, California, USA: 1851–2008. Journal of Cetacean Research and Management 11(2):163-184.     View Document Demer, David A., John Butler, George R. Cutter Jr., Kevin Stierhoff, Kyle Byers, David Murfin, Josiah Renfree, Scott Mau, and Thomas S. Sessions. 2010. Collaborative Optically-assisted Acoustical Survey Technique (COAST) for surveying the distributions, abundances, and lengths of demersal fishes, by species [abstract]. In: Kristan Blackhart (ed.), Proceedings: 11th National Stock Assessment Workshop: Characterization of scientific uncertainty in assessments to improve determination of acceptable biological catches (ABCs); Joint Session of the National Stock and Habitat Assessment Workshops: Incorporating habitat information in stock assessments; and 1st National Habitat Assessment Workshop: Moving towards a national habitat science program (St. Petersburg, Florida, May 17-20, 2010), p. 113. U.S. Department of Commerce, NOAA Technical Memorandum NMFS-F/SPO-112.       Dewar, H., T. Thys, S.L.H. Teo, C. Farwell, J. O'Sullivan, T. Tobayama, M. Soichi, T. Nakatsubo, Y. Kondo, Y. Okada, D.J. Lindsay, G.C. Hays, A. Walli, K. Weng, J.T. Streelman, and S.A. Karl. 2010. Satellite tracking the world's largest jelly predator, the ocean sunfish, Mola mola, in the Western Pacific. Journal of Experimental Marine Biology and Ecology 393(1-2):32-42.     View Document Dick, E.J., and Alec D. MacCall. 2010. Estimates of sustainable yield for 50 data-poor stocks in the Pacific Coast groundfish fishery management plan. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-460, 201 p.     View Document Dick, E.J., and Alec MacCall. 2010. Determining yields for data-poor stocks using a DCAC-based stock reduction analysis of catch history [abstract]. In: Kristan Blackhart (ed.), Proceedings: 11th National Stock Assessment Workshop: Characterization of scientific uncertainty in assessments to improve determination of acceptable biological catches (ABCs); Joint Session of the National Stock and Habitat Assessment Workshops: Incorporating habitat information in stock assessments; and 1st National Habitat Assessment Workshop: Moving towards a national habitat science program (St. Petersburg, Florida, May 17-20, 2010), p. 95. U.S. Department of Commerce, NOAA Technical Memorandum NMFS-F/SPO-112.       Donoso, Miguel, and Peter H. Dutton. 2010. Sea turtle bycatch in the Chilean pelagic longline fishery in the southeastern Pacific: Opportunities for conservation. Biological Conservation 143(11):2672-2684.     View Document Dotson, Ronald C., David A. Griffith, David L. King, and Robert L. Emmett. 2010. Evaluation of a marine mammal excluder device (MMED) for a Nordic 264 midwater rope trawl. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-455, 14 p.     View Document Drake, Jonathan S., Ewann A. Berntson, Jason M. Cope, Richard G. Gustafson, Elizabeth E. Holmes, Phillip S. Levin, Nick Tolimieri, Robin S. Waples, Susan M. Sogard, and Gregory D. Williams. 2010. Status review of five rockfish species in Puget Sound, Washington: bocaccio (Sebastes paucispinis), canary rockfish (S. pinniger), yelloweye rockfish (S. ruberrimus), greenstriped rockfish (S. elongatus), and redstripe rockfish (S. proriger). U.S. Department of Commerce, NOAA Technical Memorandum NMFS-NWFSC-108. 234 p.       Dunn, D.C., K. Stewart, R.H. Bjorkland, M. Haughton, S. Singh-Renton, R. Lewison, L Thorne, and P.N. Halpin. 2010. A regional analysis of coastal and domestic fishing effort in the wider Caribbean. Fisheries Research 102(1-2):60-68.     View Document Durban, J., A. Lang, D. Weller, D. Rugh, R. Hobbs, and W. Perryman. 2010. Comparing two methods of shore-based counts of eastern North Pacific gray whales. Paper SC/62/BRG8 presented to the International Whaling Commission, Scientific Committee (SC62 meeting, Agadir, Morocco, 2010). 6 p.       Durban, J., D. Ellifrit, M. Dahlheim, J. Waite, C. Matkin, L. Barrett-Lennard, G. Ellis, R. Pitman, R. LeDuc, and P. Wade. 2010. Photographic mark-recapture analysis of clustered mammal-eating killer whales around the Aleutian Islands and Gulf of Alaska. Marine Biology 157(7):1591-1604.       Eguchi, Tomoharu, Jeffrey A. Seminoff, Robin A. LeRoux, Peter H. Dutton, and Donna L. Dutton. 2010. Abundance and survival rates of green turtles in an urban environment: coexistence of humans and an endangered species. Marine Biology 157(8):1869-1877.       Elfes, Cristiane T., Glenn R. VanBlaricom, Daryle Boyd, John Calambokidis, Phillip J. Clapham, Ronald W. Pearce, Jooke Robbins, Juan Carlos Salinas, Janice M. Straley, Paul R. Wade, and Margaret M. Krahn. 2010. Geographic variation of persistent organic pollutant levels in humpback whale (Megaptera novaeangliae) feeding areas of the North Pacific and North Atlantic. Environmental Toxicology and Chemistry 29(4):824-834.       Feeney, R.F., R.J. Lavenberg, and R.L. Pitman. 2010. Description of a complete Liopropoma larva from the Gulf of California (Mexico) and its comparison with L. fasciatum and L. longilepis (Actinopterygii: Epinephelidae). Ciencias Marinas 36(1):83-89.       Fiedler, Paul C. 2010. Comparison of objective descriptions of the thermocline. Limnology and Oceanography: Methods 8:313-325.       Field, J.C., A.D. MacCall, R.W. Bradley, and W.J. Sydeman. 2010. Estimating the impacts of fishing on dependent predators: a case study in the California Current. Ecological Applications 20(8):2223-2236.     View Document Field, John C., Alec D. MacCall, Stephen Ralston, Milton S. Love, and Eric F. Miller. 2010. Bocaccionomics: the effectiveness of pre-recruit indices for assessment and management of bocaccio. CalCOFI Reports 51:77-90.     View Document Field, John, Jason Cope, and Meisha Key. 2010. A descriptive example of applying vulnerability evaluation criteria to California nearshore finfish species. In: Managing data-poor fisheries: case studies, models and solutions (1-4 December 2008, Berkeley, CA), p. 235-246. California Sea Grant College Program.     View Document Foley, David G. 2010. Identification and monitoring of dynamic habitat in the changing ocean [abstract]. In: Kristan Blackhart (ed.), Proceedings: 11th National Stock Assessment Workshop: Characterization of scientific uncertainty in assessments to improve determination of acceptable biological catches (ABCs); Joint Session of the National Stock and Habitat Assessment Workshops: Incorporating habitat information in stock assessments; and 1st National Habitat Assessment Workshop: Moving towards a national habitat science program (St. Petersburg, Florida, May 17-20, 2010), p. 125. U.S. Department of Commerce, NOAA Technical Memorandum NMFS-F/SPO-112.     View Document Forney, K. A. 2010. Serious injury determinations for cetaceans caught in Hawaii longline fisheries during 1994-2008. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-462, 19 p.     View Document Forney, Karin A., Robin W. Baird, and Erin M. Oleson. 2010. Rationale for the 2010 revision of stock boundaries for the Hawai'i insular and pelagic stocks of false killer whales, Pseudorca crassidens. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-471, 7 p.     View Document Frechette, Danielle. 2010. Impacts of avian predation on juvenile salmonids in central California watersheds. Master's thesis, San Jose State University, Moss Landing Marine Laboratories. 109 p.       Fujita, R.M., K.T. Honey, A. Morris, J.R. Wilson, and H. Russell. 2010. Cooperative strategies in fisheries management: integrating across scales. Bulletin of Marine Science 86(2):251-271.       Gallagher, Sean P., David W. Wright, Barry W. Collins, and Peter B. Adams. 2010. A regional approach for monitoring salmonid status and trends: results from a pilot study in coastal Mendocino County, California. North American Journal of Fisheries Management 30(5):1075-1085.       Gallagher, Sean P., Peter B. Adams, David W. Wright, and Barry W. Collins. 2010. Performance of spawner survey techniques at low abundances levels. North American Journal of Fisheries Management 30(5):1086-1097.       Gao, Yongwen, David L. Dettman, Kevin R. Piner, and Farron R. Wallace. 2010. Isotopic correlation (delta O-18 versus delta C-13) of otoliths in identification of groundfish stocks. Transactions of the American Fisheries Society 139(2):491-501.       Gaos, Alexander R., F.A. Abreu-Grobois, J. Alfaro-Shigueto, D. Amorocho, R. Arauz, A. Baquero, R. Briseno, D. Chacon, C. Duenas, C. Hasbun, M. Liles, G. Mariona, C. Muccio, J.P. Munoz, W.J. Nichols, M. Pena, J.A. Seminoff, M. Vasquez, J. Urteaga, B. Wallace, I.L. Yanez, and P. Zarate. 2010. Signs of hope in the eastern Pacific: international collaboration reveals encouraging status for a severely depleted population of hawksbill turtles Eretmochelys imbricata. Oryx 44(4):595-601.     View Document Gerrodette, Tim, Barbara L. Taylor, Rene Swift, Shannon Rankin, Armando M. Jaramillo-Legorreta, and Lorenzo Rojas-Bracho. 2010. A combined visual and acoustic estimate of 2008 abundance, and change in abundance since 1997, for the vaquita, Phocoena sinus. Paper SC/62/SM3 presented to the International Whaling Commission, Scientific Committee (SC62 meeting, Agadir, Morocco, 2010). 24 p.     View Document Goldfinger, Chris, H. Gary Greene, Rikk G. Kvitek, Guy R. Cochrane, Samuel Y. Johnson, W. Waldo Wakefield, Mary M. Yoklavich, M. Elizabeth Clarke, and Crescent Moegling. 2010. Mapping marine benthic habitats along the U.S. west coast: current status, future plans and applications [abstract]. 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Nichols, R.D. Reina, K. Shanker, J.R. Spotila, J. Tomas, B.P. Wallace, T.M. Work, J. Zbinden, and B.J. Godley. 2010. Global research priorities for sea turtles: informing management and conservation in the 21st century. Endangered Species Research 11(3):245-269.       Hazen, Elliott L., and David W. Johnston. 2010. Meridional patterns in the deep scattering layers and top predator distribution in the central equatorial Pacific. Fisheries Oceanography 19(6):427-433.     View Document Hill, Kevin T., Nancy C.H. Lo, Beverly J. Macewicz, Paul R. Crone, and Roberto Felix-Uraga. 2010. Assessment of the Pacific sardine resource in 2010 for U.S. management in 2011. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-469, 137 p.     View Document Hollowed, Anne B., Steven Bograd, Elizabeth Brooks, Milissa A. Haltuch, Jonathan A. Hare, Roger Hewitt, Evan Howell, John Lamkin, Kenric Osgood, Jeffrey Polovina, and Michael J. Schirripa. 2010. 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Report of the Pacific Bluefin Tuna Working Group workshop (6-9 July 2010, Nanaimo, Canada). International Scientific Committee for Tuna and Tuna-like Species in the North Pacific Ocean. 32 p.       Jehl, Joseph R., Jr., and Annette E. Henry. 2010. The postbreeding migration of eared grebes. The Wilson Journal of Ornithology 122(2):217-222.       Jiao, Yan, Laura Rogers-Bennett, Ian Taniguchi, John Butler, and Paul Crone. 2010. Incorporating temporal variation in the growth of red abalone (Haliotis rufescens) using hierarchical Bayesian growth models. Canadian Journal of Fisheries and Aquatic Sciences 67(4):730-742.       Kappes, Michelle A., Scott A. Shaffer, Yann Tremblay, David G. Foley, Daniel M. Palacios, Patrick W. Robinson, Steven J. Bograd, and Daniel P. Costa. 2010. Hawaiian albatrosses track interannual variability of marine habitats in the North Pacific. Progress in Oceanography 86(1-2):246-260.     View Document Kato, H., Y.R. An, M. Bravington, B. Brownell, P. Clapham, G. 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Fishery Bulletin 108(4):442-449.       Laidre, Kristin L., Mads Peter Heide-Jorgensen, Patrick Heagerty, Anthony Cossio, Bo Bergstrom, and Malene Simon. 2010. Spatial associations between large baleen whales and their prey in West Greenland. Marine Ecology Progress Series 402:269-284.       Laikre, Linda, Fred W. Allendorf, Laurel C. Aroner, C. Scott Baker, David P. Gregovich, Michael M. Hansen, Jennifer A. Jackson, Katherine C. Kendall, Kevin McKelvey, Maile C. Neel, Isabelle Olivieri, Nils Ryman, Michael K. Schwartz, Ruth Short Bull, Jeffrey B. Stetz, David A. Tallmon, Barbara L. Taylor, Christina D. Vojta, Donald M. Waller, and Robin S. Waples. 2010. Neglect of genetic diversity in implementation of the Convention on Biology Diversity. Conservation Biology 24(1):86-88.     View Document Lang, Aimee R., David W. Weller, Richard G. Leduc, Alexander M. Burdin, and Robert L. Brownell Jr. 2010. Genetic differentiation between western and eastern (Eschrichtius robustus) gray whale populations using microsatellite markers. Paper SC/62/BRG11 presented to the International Whaling Commission, Scientific Committee (SC62 meeting, Agadir, Morocco, 2010). 18 p.     View Document Lang, Aimee R., David W. Weller, Richard G. Leduc, Alexander M. Burdin, and Robert L. Brownell, Jr. 2010. Delineating patterns of male reproductive success in the western gray whale (Eschrichtius robustus) population. Paper SC/62/BRG10 presented to the International Whaling Commission, Scientific Committee (SC62 meeting, Agadir, Morocco, 2010). 22 p.     View Document Lindley, Steve. 2010. Predicting the distribution of anadromous fish in fresh water using habitat models [abstract]. 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U.S. Department of Commerce, NOAA Technical Memorandum NMFS-F/SPO-102. 72 p.     View Document Lo, Nancy C.H., Beverly J. Macewicz, and David A. Griffith. 2010. Spawning biomass of Pacific sardine (Sardinops sagax) off the U.S. in 2010. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-463, 35 p.     View Document Lo, Nancy C.H., Beverly J. Macewicz, and David A. Griffith. 2010. Biomass and reproduction of Pacific sardine (Sardinops sagax) off the Pacific northwestern United States, 2003-2005. Fishery Bulletin (U.S.) 108(2):174-192.     View Document Lo, Nancy C.H., Emmanis Dorval, Rene Funes-Rodriguez, Martin E. Hernandez-Rivas, Yuhong Huang, and Zhengyu Fan. 2010. Utilities of larval densities of Pacific mackerel (Scomber japonicus) off California, USA and west coast of Mexico from 1951 to 2008, as spawning biomass indices. Ciencia Pesquera 18(2):59-75.       Lockhart, Susanne J., and Christopher D. Jones. 2010. High densities of pterobranchs and sea pens encountered at sites in the South Orkney Islands (Subarea 48.2): two potential VMEs. CCAMLR Working Group on Ecosystem Monitoring and Management (Cape Town, South Africa, 26 July - 3 August 2010), Document no. WG-EMM-10/14.       Lonin, Serguei A., Jose L. Hernandez, and Daniel M. Palacios. 2010. Atmospheric events disrupting coastal upwelling in the southwestern Caribbean. Journal of Geophysical Research 115:C06030 (17 p.).       MacFarlane, R. Bruce. 2010. Energy dynamics and growth of Chinook salmon (Oncorhynchus tshawytscha) from the Central Valley of California during the estuarine phase and first ocean year. Canadian Journal of Fisheries and Aquatic Sciences 67(10):1549-1565.     View Document Mason, Janet. 2010. Review of the use of California commercial fisheries landings and recreational catch data in stock assessments. 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Canadian Journal of Fisheries and Aquatic Sciences 67(11):1782-1790.       McKinnell, S.M., S. Batten, S.J. Bograd, J.L. Boldt, N. Bond, S. Chiba, M.J. Dagg, M.G.G. Foreman, G.L. Hunt Jr., J.R. Irvine, O.N. Katugin, V. Lobanov, D.L. Mackas, P. Mundy, V. Radchenko, Y.J. Ro, H. Sugisaki, F.A. Whitney, A. Yatsu, and S. Yoo. 2010. North Pacific synthesis. In: Stewart M. McKinnell and Michael J. Dagg (eds.), Marine ecosystems of the north Pacific Ocean, 2003-2008, p. 1-55. PICES Special Publication no. 4.       Michel, Cyril J. 2010. River and estuarine survival and migration of yearling Sacramento River Chinook salmon (Oncorhynchus tshawytscha) smolts and the influence of environment. Master's thesis, University of California, Santa Cruz. 120 p.       Miller, Jessica A., Brian K. Wells, Susan M. Sogard, Churchill B. Grimes, and Gregor M. Cailliet. 2010. Introduction to proceedings of the 4th International Otolith Symposium. 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Characterization of 42 single nucleotide polymorphism (SNP) markers for the bowhead whale (Balaena mysticetus) for use in discriminating populations. Marine Mammal Science 26(3):716-732.       Nelson, Troy C., Phaedra Doukakis, Steven T. Lindley, Andrea Drauch Schreier, Joseph E. Hightower, Larry R. Hildebrand, Rebecca E. Whitlock, and Molly A.H. Webb. 2010. Modern technoloiges for an ancient fish: tools to inform management of migratory sturgeon stocks. A report for the Pacific Ocean Shelf Tracking (POST) Project. 55 p.     View Document O'Farrell, Michael R., Melodie L. Palmer-Zwahlen, and Jennifer Simon. 2010. Is the September 1 river return date approximation appropriate for Klamath River fall Chinook? U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-468, 17 p.     View Document Oleson, Erin M., Christofer H. Boggs, Karin A. Forney, M. Bradley Hanson, Donald R. Kobayashi, Barbara L. Taylor, Paul R. Wade, and Gina M. Ylitalo. 2010. Status review of Hawaiian insular false killer whales (Pseudorca crassidens) under the Endangered Species Act. U.S. Department of Commerce, NOAA Technical Memorandum NMFS-PIFSC-22.     View Document Olson, Paula A. 2010. Blue whale photo-identification from IWC IDCR/SOWER cruises 1987/1988 to 2008/2009. Paper SC/62/SH29 presented to the International Whaling Commission, Scientific Committee (SC62 meeting, Agadir, Morocco, 2010). 6 p.       Olson, Robert J., Brian N. Popo, Brittany S. Graham, Gladis A. Lopez-Ibarra, Felipe Galvan-Magana, Cleridy E. Lennert-Cody, Noemi Bocanegra-Castillo, Natalie J. Wallsgrove, Elizabeth Gier, Vanessa Alatorre-Ramirez, Lisa T. Ballance, and Brian Fry. 2010. Food-web inferences of stable isotope spatial patterns in copepods and yellowfin tuna in the pelagic eastern Pacific Ocean. Progress in Oceanography 86(1-2):124-138.     View Document Pacific Fishery Management Council (Salmon Technical Team). 2010. Preseason report III: Analysis of Council adopted management measures for 2010 ocean salmon fisheries. Pacific Fishery Management Council, Portland, Oregon. 38 p.     View Document Pacific Fishery Management Council (Salmon Technical Team). 2010. Preseason report I: Stock abundance analysis for 2010 ocean salmon fisheries. Pacific Fishery Management Council, Portland, Oregon. 103 p.     View Document Pacific Fishery Management Council (Salmon Technical Team). 2010. Review of 2009 ocean salmon fisheries. Pacific Fishery Management Council, Portland, Oregon. 331 p.     View Document Pacific Fishery Management Council (Salmon Technical Team). 2010. Preseason report II: Analysis of proposed regulatory options for 2010 ocean salmon fisheries. Pacific Fishery Management Council, Portland, Oregon. 44 p.       Padman, Laurie, Daniel P. Costa, S. Thompson Bolmer, Michael E. Goebel, Luis A. Huckstadt, Adrian Jenkins, Birgitte I. McDonald, and Deborah R. Shoosmith. 2010. Seals map bathymetry of the Antarctic continental shelf. Geophysical Research Letters 37:L21601 (5p.).       Pajuelo, Mariela, Karen A. Bjorndal, Joanna Alfaro-Shigueto, Jeffrey A. Seminoff, Jeffrey C. Mangel, and Alan B. Bolten. 2010. Stable isotope variation in loggerhead turtles reveals Pacific-Atlantic oceanographic differences. Marine Ecology Progress Series 417:277-285.     View Document Patrick, Wesley S., Paul Spencer, Jason Link, Jason Cope, John Field, Donald Kobayashi, Peter Lawson, Todd Gedamke, Enric Cortés, Olav Ormseth, Keith Bigelow, and William Overholtz. 2010. Using productivity and susceptibility indices to assess the vulnerability of United States fish stocks to overfishing. Fishery Bulletin 108(3):305-322.       Payne, John, Kelly Andrews, Cedar Chittenden, Glenn Crossin, Fred Goetz, Scott Hinch, Phil Levin, Steve Lindley, Scott McKinley, Michael Melnychuk, Troy Nelson, Erin Rechisky, and David Welch. 2010. 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Hurley, Elena M. Finkbeiner, Alan B. Bolten, Milani Y. Chaloupka, Brian J. Hutchinson, F. Alberto Abreu-Grobois, Diego Amorocho, Karen A. Bjorndal, Jerome Bourjea, Brian W. Bowen, Raquel Briseno Duenas, Paolo Casale, B. C. Choudhury, Alice Costa, Peter H. Dutton, Alejandro Fallabrino, Alexandre Girard, Marc Girondot, Matthew H. Godfrey, Mark Hamann, Milagros Lopez- Mendilaharsu, Maria Angela Marcovaldi, Jeanne A. Mortimer, John A. Musick, Ronel Nel, Nicolas J. Pilcher, Jeffrey A. Seminoff, Sebastian Troeng, Blair Witherington, and Roderic B. Mast. 2010. Regional management units for marine turtles: a novel framework for prioritizing conservation and research across multiple scales. PLoS ONE 5(12):e15465 (11 p.).     View Document Walter, John F., Stephen Ralston, and Terill Hollweg. 2010. Joint Session Breakout 1B: Using habitat information in survey design and analysis, diadromous/estuarine dependent/reef & untrawlable groups. In: Kristan Blackhart (ed.), Proceedings: 11th National Stock Assessment Workshop: Characterization of scientific uncertainty in assessments to improve determination of acceptable biological catches (ABCs); Joint Session of the National Stock and Habitat Assessment Workshops: Incorporating habitat information in stock assessments; and 1st National Habitat Assessment Workshop: Moving towards a national habitat science program (St. Petersburg, Florida, May 17-20, 2010), p. 28-30. U.S. Department of Commerce, NOAA Technical Memorandum NMFS-F/SPO-112.       Warren, Joseph D., and David A. Demer. 2010. Abundance and distribution of Antarctic krill (Euphausia superba) nearshore of Cape Shirreff, Livingston Island, Antarctica, during six austral summers between 2000 and 2007. Canadian Journal of Fisheries and Aquatic Sciences 67(7):1159-1170.       Watters, Diana L., Mary M. Yoklavich, Milton S. Love, and Donna M. Schroeder. 2010. Assessing marine debris in deep seafloor habitats off California. Marine Pollution Bulletin 60(1):131-138.     View Document Weber, E.D., and S. McClatchie. 2010. Predictive models of northern anchovy Engraulis mordax and Pacific sardine Sardinops sagax spawning habitat in the California Current. Marine Ecology Progress Series 406:251-263.     View Document Weller, Dave, Robert Brownell Jr., Alexander Burdin, Greg Donovan, Nick Gales, Finn Larsen, Randall Reeves, and Grigory Tsidulko (Scientific Steering Group). 2010. Progress report on the proposed research programme for satellite tagging western gray whales in 2010. Paper SC/62/BRG7 presented to the International Whaling Commission, Scientific Committee (SC62 meeting, Agadir, Morocco, 2010). 6 p.     View Document Wells, Brian. 2010. Pelagic habitats and ecosystem considerations for salmon and other pelagics of the central coast of California [abstract]. In: Kristan Blackhart (ed.), Proceedings: 11th National Stock Assessment Workshop: Characterization of scientific uncertainty in assessments to improve determination of acceptable biological catches (ABCs); Joint Session of the National Stock and Habitat Assessment Workshops: Incorporating habitat information in stock assessments; and 1st National Habitat Assessment Workshop: Moving towards a national habitat science program (St. Petersburg, Florida, May 17-20, 2010), p. 144. U.S. Department of Commerce, NOAA Technical Memorandum NMFS-F/SPO-112.       Yack, Tina M., Jay Barlow, Marie A. Roch, holger Klinck, Steve Martin, David K. Mellinger, and Douglas Gillespie. 2010. Comparison of beaked whale detection algorithms. Applied Acoustics 71(11):1043-1049.       Yoder, James A., Scott C. Doney, David A. Siegel, and Cara Wilson. 2010. Study of marine ecosystems and biogeochemistry now and in the future: examples of the unique contributions from space. Oceanography 23(4):104-117.     View Document Yoklavich, Mary M. 2010. Developing and implementing the Habitat Assessment Improvement Plan [abstract]. In: Kristan Blackhart (ed.), Proceedings: 11th National Stock Assessment Workshop: Characterization of scientific uncertainty in assessments to improve determination of acceptable biological catches (ABCs); Joint Session of the National Stock and Habitat Assessment Workshops: Incorporating habitat information in stock assessments; and 1st National Habitat Assessment Workshop: Moving towards a national habitat science program (St. Petersburg, Florida, May 17-20, 2010), p. 92. U.S. Department of Commerce, NOAA Technical Memorandum NMFS-F/SPO-112.     View Document Yoklavich, Mary M., and Victoria O'Connell. 2010. Habitat-specific survey methods to improve assessments of rockfishes off California and Alaska [abstract]. In: Kristan Blackhart (ed.), Proceedings: 11th National Stock Assessment Workshop: Characterization of scientific uncertainty in assessments to improve determination of acceptable biological catches (ABCs); Joint Session of the National Stock and Habitat Assessment Workshops: Incorporating habitat information in stock assessments; and 1st National Habitat Assessment Workshop: Moving towards a national habitat science program (St. Petersburg, Florida, May 17-20, 2010), p. 112. U.S. Department of Commerce, NOAA Technical Memorandum NMFS-F/SPO-112.     View Document Yoklavich, Mary M., Michael Parke, and Joe Nohner. 2010. NHAW Session 3 Breakout: How to implement the proposed solutions in the Southwest and Pacific Island Regions. In: Kristan Blackhart (ed.), Proceedings: 11th National Stock Assessment Workshop: Characterization of scientific uncertainty in assessments to improve determination of acceptable biological catches (ABCs); Joint Session of the National Stock and Habitat Assessment Workshops: Incorporating habitat information in stock assessments; and 1st National Habitat Assessment Workshop: Moving towards a national habitat science program (St. Petersburg, Florida, May 17-20, 2010), p. 72-73. U.S. Department of Commerce, NOAA Technical Memorandum NMFS-F/SPO-112.     View Document Yoklavich, Mary, and Elizabeth Clarke. 2010. Deep sea corals and benthic habitat surveys in and around Channel Islands National Marine Sanctuary. Cruise report, NOAA McArthur M2-10-02: Leg 3, 27 June - 02 July 2010. U.S. NOAA National Marine Fisheries Service, Santa Cruz, California. 7 p.     View Document Yoklavich, Mary, Kristan Blackhart, Stephen K. Brown, Correigh Greene, Thomas Minello, Thomas Noji, Michael Parke, Frank Parrish, Katherine Smith, Robert Stone, and W. Waldo Wakefield. 2010. Marine fisheries habitat assessment improvement plan: Report of the National Marine Fisheries Service Habitat Assessment Improvement Plan Team. U.S. Department of Commerce, NOAA Technical Memorandum NMFS-F/SPO-108. 115 p.     View Document Yoklavich, Mary, Richard Starr, et al. 2010. Monitoring MPAs in deep water off Central California: 2007-2008 IMPACT submersible baseline survey. Final report to the California Ocean Protection Council. 49 p.       Young, Hillary S., Scott A. Shaffer, Douglas J. McCauley, Dave G. Foley, Rodolfo Dirzo, and Barbara A. Block. 2010. Resource partitioning by species but not sex in sympatric boobies in the central Pacific Ocean. Marine Ecology Progress Series 403:291-301.     View Document Zwolinski, Juan P., George R. Cutter Jr., and David A. Demer. 2010. Acoustical-optical surveys of coastal pelagic species, with emphasis on Pacific sardine, using improved allocation of effort, multifrequency acoustic methods, and a towed stereo camera system [abstract]. In: Kristan Blackhart (ed.), Proceedings: 11th National Stock Assessment Workshop: Characterization of scientific uncertainty in assessments to improve determination of acceptable biological catches (ABCs); Joint Session of the National Stock and Habitat Assessment Workshops: Incorporating habitat information in stock assessments; and 1st National Habitat Assessment Workshop: Moving towards a national habitat science program (St. Petersburg, Florida, May 17-20, 2010), p. 100-101. U.S. Department of Commerce, NOAA Technical Memorandum NMFS-F/SPO-112.      
2012
  Merz, Joseph E., Paul Skvorc, Susan M. Sogard, Clark Watry, Scott M. Blankenship, and Erwin E. Van Nieuwenhuyse. 2012. Onset of melanophore patterns in the head region of Chinook salmon: a natural marker for the reidentification of individual fish. North American Journal of Fisheries Management 32(4):806-816.       Nieto, K., H. Demarcq, and S. McClatchie. 2012. Mesoscale frontal structures in the Canary Upwelling System: New front and filament detection algorithms applied to spatial and temporal patterns. Remote Sensing of Environment 123:339-346.       Olson, Paula A. 2012. Field guide to marine mammals of the Pacific Coast: Baja, California, Oregon, Washington, British Columbia, by Sarah G. Allen and Joe Mortenson [book review]. The Quarterly Review of Biology 87(3):273.       Olson, Paula A., Paul Ensor, and Sanna Kuningas. 2012. Observations of killer whales off East Antarctica, 82°-95°E, in 2009. Journal of Cetacean Research and Management 12(1):61-64.     View Document Pacific Fishery Management Council (Salmon Technical Team). 2012. Preseason report III: Council adopted management measures and environmental assessment Part 3 for 2012 ocean salmon fishery regulations. Regulation Identifier Number 0648-XA921. Pacific Fishery Management Council, Portland, Oregon. 40 p.     View Document Pacific Fishery Management Council (Salmon Technical Team). 2012. Preseason report I: Stock abundance analysis and environmental assessment Part 1 for 2012 ocean salmon fishery regulations. Regulation Identifier Number 0648-XA921. Pacific Fishery Management Council, Portland, Oregon. 126 p.     View Document Pacific Fishery Management Council (Salmon Technical Team). 2012. Review of 2011 ocean salmon fisheries: Stock assessment and fishery evaluation document for the Pacific Coast Salmon Fishery Management Plan. Pacific Fishery Management Council, Portland, Oregon. 352 p.     View Document Pacific Fishery Management Council (Salmon Technical Team). 2012. Preseason report II: Proposed alternatives and environmental assessment Part 2 for 2012 ocean salmon fishery regulations. Regulation Identifier Number 0648-XA921. Pacific Fishery Management Council, Portland, Oregon. 69 p.       Padman, Laurie, Daniel P. Costa, Michael S. Dinniman, Helen A. Fricker, Michael E. Goebel, Luis A. Huckstadt, Angelika Humbert, Ian Joughin, Jan T.M. Lenaerts, Stefan R.M. Ligtenberg, Ted Scambos, and Michiel R. van den Broeke. 2012. Oceanic controls on the mass balance of Wilkins Ice Shelf, Antarctica. Journal of Geophysical Research 117:C01010 (17 p.).       Paez-Rosas, Diego, David Aurioles-Gamboa, Juan Jose Alava, and Daniel M. Palacios. 2012. Stable isotopes indicate differing foraging strategies in two sympatric otariids of the Galapagos Islands. Journal of Experimental Marine Biology and Ecology 424-425:44-52.       Palacios, Daniel M., Julio C. Herrera, Tim Gerrodette, Carolina Garcia, German A. Soler, Isabel C. Avila, Sandra Bessudo, Elizabeth Hernandez, Fernando Trujillo, Lilian Florez-Gonzalez, and Iain Kerr. 2012. Cetacean distribution and relative abundance in Colombia's Pacific EEZ from survey cruises and platforms of opportunity. Journal of Cetacean Research and Managemnt 12(1):45-60.       Pipal, Kerrie A., Jeremy J. Notch, Sean A. Hayes, and Peter B. Adams. 2012. Estimating escapement for a low-abundance steelhead population using dual-frequency identification sonar (DIDSON). North American Journal of Fisheries Management 32(5):880-893.       Pitman, Robert L., and John W. Durban. 2012. Cooperative hunting behavior, prey selectivity and prey handling by pack ice killer whales (Orcinus orca), type B, in Antarctic Peninsula waters. Marine Mammal Science 28(1):16-36.       Polito, Michael J., Heather N. Koopman, Stephanie Able, Jennifer Walsh, and Michael E. Goebel. 2012. Physiological constraints and the influence of diet on fatty acids in the yolk of gentoo penguins, Pygoscelis papua. Journal of Comparative Physiology B 182(5):703-713.       Preti, Antonella, Candan U. Soykan, Heidi Dewar, R.J. David Wells, Natalie Spear, and Suzanne Kohin. 2012. Comparative feeding ecology of shortfin mako, blue and thresher sharks in the California Current. Environmental Biology of Fishes 95(1):127-146.       Pritchard, V.L., A. Abadia-Cardoso, and J.C. Garza. 2012. Discovery and characterization of a large number of diagnostic markers to discriminate Oncorhynchus mykiss and O. clarkii. Molecular Ecology Resources 12(5):918-931.       Ruiz-Cooley, R.I., and T. Gerrodette. 2012. Tracking large-scale latitudinal patterns of δ13C and δ15N along the E Pacific using epi-mesopelagic squid as indicators. Ecosphere 3(7): article 63 (17 p.).       Rundio, David E., and Steven T. Lindley. 2012. Reciprocal fluxes of stream and riparian invertebrates in a coastal California basin with Mediterranean climate. Ecological Research 27(3):539-550.       Rundio, David E., Thomas H. Williams, Devon E. Pearse, and Steven T. Lindley. 2012. Male-biased sex ratio of nonanadromous Oncorhynchus mykiss in a partially migratory population in California. Ecology of Freshwater Fish 21(2):293-299.       Salinas, Santiago, and Stephan B. Munch. 2012. Thermal legacies: transgenerational effects of temperature on growth in a vertebrate. Ecology Letters 15(2):159-163.       Santora, Jarrod A. 2012. Habitat use of hourglass dolphins near the South Shetland Islands, Antarctica. Polar Biology 35(5):801-806.       Santora, Jarrod A., William J. Sydeman, Isaac D. Schroeder, Christian S. Reiss, Brian K. Wells, John C. Field, Anthony M. Cossio, and Valerie J. Loeb. 2012. Krill space: a comparative assessment of mesoscale structuring in polar and temperate marine ecosystems. ICES Journal of Marine Science 69(7):1317-1327.       Satterthwaite, William H., Sean A. Hayes, Joseph E. Merz, Susan M. Sogard, Danielle M. Frechette, and Marc Mangel. 2012. State-dependent migration timing and use of multiple habitat types in anadromous salmonids. Transactions of the American Fisheries Society 141(3):781-794.       Satterthwaite, William Hallowell, Michael Steven Mohr, Michael Robert O'Farrell, and Brian Kenneth Wells. 2012. A Bayesian hierarchical model of size-at-age in ocean-harvested stocks: quantifying effects of climate and temporal variability. Canadian Journal of Fisheries and Aquatic Sciences 69(5):942-954.       Schwartz, Mark W., Jessica J. Hellmann, Jason M. McLachlan, Dov F. Sax, Justin O. Borevitz, Jean Brennan, Alejandro E. Camacho, Gerardo Ceballos, Jamie R. Clark, Holly Doremus, Regan Early, Julie R. Etterson, Dwight Fielder, Jacquelyn L. Gill, Patrick Gonzalez, Nancy Green, Lee Hannah, Dale W. Jamieson, Debra Javeline, Ben A. Minteer, Jay Odenbaugh, Stephen Polasky, David M. Richardson, Terry L. Root, Hugh D. Safford, Osvaldo Sala, Stephen H. Schneider, Andrew R. Thompson, John W. Williams, Mark Vellend, Pati Vitt, and Sandra Zellmer. 2012. Managed relocation: integrating the scientific, regulatory, and ethical challenges. BioScience 62(8):732-743.     View Document Scott, Michael D., Susan J. Chivers, Robert J. Olson, Paul C. Fiedler, and Kim Holland. 2012. Pelagic predator associations: tuna and dolphins in the eastern tropical Pacific Ocean. Marine Ecology Progress Series 458:283-302.       Shelton, Andrew O., E.J. Dick, Donald E. Pearson, Stephen Ralston, and Marc Mangel. 2012. Estimating species composition and quantifying uncertainty in multispecies fisheries: hierarchical Bayesian models for stratified sampling protocols with missing data. Canadian Journal of Fisheries and Aquatic Sciences 69:(2) 231-246.     View Document Shillinger, George L., Emanuele Di Lorenzo, Hao Luo, Steven J. Bograd, Elliott L. Hazen, Helen Bailey, and James R. Spotila. 2012. On the dispersal of leatherback turtle hatchlings from Mesoamerican nesting beaches. Proceedings of the Royal Society B 279(1737):2391-2395.       Shillinger, George L., Helen Bailey, Steven J. Bograd, Elliott L. Hazen, Mark Hamann, Philippe Gaspar, Brendan J. Godley, Rory P. Wilson, and James R. Spotila. 2012. Tagging through the stages: technical and ecological challenges in observing life histories through biologging [Introduction to theme section]. Marine Ecology Progress Series 457:165-170.       Sogard, Susan M., Joseph E. Merz, William H. Satterthwaite, Michael P. Beakes, David R. Swank, Erin M. Collins, Robert G. Titus, and Marc Mangel. 2012. Contrasts in habitat characteristics and life history patterns of Oncorhynchus mykiss in California's central coast and Central Valley. Transactions of the American Fisheries Society 141(3):747-760.       Song, Hajoon, Arthur J. Miller, Sam McClatchie, Edward D. Weber, Karen M. Nieto, and David M. Checkley Jr. 2012. Application of a data-assimilation model to variability of Pacific sardine spawning and survivor habitats with ENSO in the California Current System. Journal of Geophysical Research 117:C03009 (15 p.).       Stierhoff, Kevin L., Melissa Neuman, and John L. Butler. 2012. On the road to extinction? Population declines of the endangered white abalone, Haliotis sorenseni. Biological Conservation 152:46-52.     View Document Stout, Heather A., Peter W. Lawson, Daniel L. Bottom, Thomas D. Cooney, Michael J. Ford, Chris E. Jordan, Robert G. Kope, Lance M. Kruzic, George R. Pess, Gordon H. Reeves, Mark D. Scheuerell, Thomas C. Wainwright, Robin S. Waples, Eric Ward, Laurie A. Weitkamp, John G. Williams, and Thomas A. Williams. 2012. Scientific conclusions of the status review for Oregon coast coho salmon (Oncorhynchus kisutch). U.S. Department of Commerce, NOAA Technical Memorandum NMFS-NWFSC-118. 242 p.     View Document Thompson, Andrew R., William Watson, Sam McClatchie, and Edward D. Weber. 2012. Multi-scale sampling to evaluate assemblage dynamics in an oceanic marine reserve. PLoS ONE 7(3): e33131.       Thompson, Sarah Ann, William J. Sydeman, Jarrod A. Santora, Bryan A. Black, Robert M. Suryan, John Calambokidis, William T. Peterson, and Steven J. Bograd. 2012. Linking predators to seasonality of upwelling: using food web indicators and path analysis to infer trophic connections. Progress in Oceanography 101(1):106-120.       Villareal, Tracy A., Colbi G. Brown, Mark A. Brzezinski, Jeffrey W. Krause, and Cara Wilson. 2012. Summer diatom blooms in the North Pacific subtropical gyre: 2008-2009. PLoS ONE 7(4): e33109 (15 p.).       Vincenzi, Simone, William Hallowell Satterthwaite, and Marc Mangel. 2012. Spatial and temporal scale of density-dependent body growth and its implications for recruitment, population dynamics and management of stream-dwelling salmonid populations. Reviews in Fish Biology and Fisheries 22(3):813-825.     View Document Wade, Paul R., Randall R. Reeves, and Sarah L. Mesnick. 2012. Social and behavioural factors in cetacean responses to overexploitation: are odontocetes less "resilient" than mysticetes. Journal of Marine Biology 2012: article 567276 (15 p.).     View Document Weber, Edward D., and Sam McClatchie. 2012. Effect of environmental conditions on the distribution of Pacific mackerel (Scomber japonicus) larvae in the California Current system. Fishery Bulletin (U.S.) 110(1):85-97.       Wells, Brian K., Jarrod A. Santora, John C. Field, R. Bruce MacFarlane, Baldo B. Marinovic, and William J. Sydeman. 2012. Population dynamics of Chinook salmon Oncorhynchus tshawytscha relative to prey availability in the central California coastal region. Marine Ecology Progress Series 457:125-137.     View Document Winship, Arliss J., Michael R. O'Farrell, and Michael S. Mohr. 2012. Management Strategy Evaluation for Sacramento River winter Chinook salmon. Report to the U.S. National Marine Fisheries Service, Southwest Region, Long Beach, California. 85 p.     View Document Wraith, James, and Suzanne Kohin. 2012. Cruise report, F/V Ventura II, LL-JS-0024, June 24, 2011 - July 13, 2011 and October 21, 2011 - October 30, 2011: Highly Migratory Species (HMS) abundance survey: Fisheries Resources Division. NOAA National Marine Fisheries Service, Southwest Fisheries Science Center, La Jolla, California. 5 p.       Yoklavich, Mary, and H. Gary Greene. 2012. The Ascension-Monterey Canyon System: Habitats of demersal fishes and macroinvertebrates along the central California coast of the USA. In: Peter T. Harris and Elaine K. Baker (eds.), Seafloor geomorphology as benthic habitat: GeoHAB atlas of seafloor geomorphic features and benthic habitats, p. 739-749. Elsevier.       Zeidberg, Louis D., John L. Butler, Darlene Ramon, Anthony Cossio, Kevin L. Stierhoff, and Annette Henry. 2012. Estimation of spawning habitats of market squid (Doryteuthis opalescens) from field surveys of eggs off Central and Southern California. Marine Ecology 33(3):326-336.     View Document Zwolinski, Juan P., and David A. Demer. 2012. A cold oceanographic regime with high exploitation rates in the Northeast Pacific forecasts a collapse of the sardine stock. Proceedings of the National Academy of Sciences of the United States of America 109(11):4175-4180.     View Document Zwolinski, Juan P., David A. Demer, Kyle A. Byers, George R. Cutter, Josiah S. Renfree, Thomas S. Sessions, and Beverly J. Macewicz. 2012. Distributions and abundances of Pacific sardine (Sardinops sagax) and other pelagic fishes in the California Current Ecosystem during spring 2006, 2008, and 2010, estimated from acoustic-trawl surveys. Fishery Bulletin (U.S.) 110(1):110-122.      
2011
  Brooks, Cassandra M., Allen H. Andrews, Julian R. Ashford, Nakul Ramanna, Christopher D. Jones, Craig C. Lundstrom, and Gregor M. Cailliet. 2011. Age estimation and lead-radium dating of Antarctic toothfish (Dissostichus mawsoni) in the Ross Sea. Polar Biology 34(3):329-338.       Roden, Suzanne, and Peter Dutton. 2011. Isolation and characterization of 14 polymorphic microsatellite loci in the leatherback turtle (Dermochelys coriacea) and cross-species amplification. Conservation Genetics Resources 3(1):49-52.      
2012
  Bonin, Carolina A., Michael E. Goebel, Gregory M. O'Corry-Crowe, and Ronald S. Burton. 2012. Twins or not? Genetic analysis of putative twins in Antarctic fur seals, Arctocephalus gazella, on the South Shetland Islands. Journal of Experimental Marine Biology and Ecology 412:13-19.       McDonald, Birgitte I., Michael E. Goebel, Daniel E. Crocker, and Daniel P. Costa. 2012. Dynamic influence of maternal and pup traits on maternal care during lactation in an income breeder, the Antarctic fur seal. Physiological and Biochemical Zoology 85(3):243-254.       McDonald, Birgitte I., Michael E. Goebel, Daniel E. Crocker, and Daniel P. Costa. 2012. Biological and environmental drivers of energy allocation in a dependent mammal, the Antarctic fur seal pup. Physiological and Biochemical Zoology 85(2):134-147.      
2011
  Palmer, Carol, Stephen A. Murphy, Deborah Thiele, Guido J. Parra, Kelly M. Robertson, Isabel Beasley, and Chris M. Austin. 2011. Analysis of mitochondrial DNA clarifies the taxonomy and distribution of the Australian snubfin dolphin (Orcaella heinsohni) in northern Australian waters. Marine and Freshwater Research 62(11):1303-1307.      
2012
  Rendell, Luke, Sarah L. Mesnick, Merel L. Dalebout, Jessica Burtenshaw, and Hal Whitehead. 2012. Can genetic differences explain vocal dialect variation in sperm whales, Physeter macrocephalus. Behavior Genetics 42(2):332-343.      
2011
View Document Dunn, D.C. (ed.), J. Ardron, N. Ban, N. Bax, P. Bernal, S. Bograd, C. Corrigan, P. Dunstan, E. Game, K. Gjerde, H. Grantham, P.N. Halpin, A.L. Harrison, E. Hazen, E. Lagabrielle, B. Lascelles, S. Maxwell, S. McKenna, S. Nicol, E. Norse, D. Palacios, L. Reeve, G. Shillinger, F. Simard, K. Sink, F. Smith, A. Spadone, and M. Wurtz. 2011. Ecologically or biologically significant areas in the pelagic realm: examples and guidelines: Workshop report (May 12-14, 2011, Sidney, British Columbia, Canada). International Union for Conservation of Nature (IUCN). 44 p.       Sumaila, U. Rashid, William W.L. Cheung, Vicky W.Y. Lam, Daniel Pauly, and Samuel Herrick. 2011. Climate change impacts on the biophysics and economics of world fisheries. Nature Climate Change 1:449-456.      
2012
  Abecassis, Melanie, Heidi Dewar, Donald Hawn, and Jeffrey Polovina. 2012. Modeling swordfish daytime vertical habitat in the North Pacific Ocean from pop-up archival tags. Marine Ecology Progress Series 452:219-236.       Alfaro-Shigueto, Joanna, Jeffrey C. Mangel, Peter H. Dutton, Jeffrey A. Seminoff, and Brendan J. Godley. 2012. Trading information for conservation: a novel use of radio broadcasting to reduce sea turtle bycatch. Oryx 46(3):332-339.     View Document Allen, B.M., J.G. Mead, R.L. Brownell, and T.K. Yamada. 2012. Review of current knowledge on Mesoplodon densirostris in the North Pacific and North Indian oceans, including identification of knowledge gaps and suggestions for future research. Paper SC/64/SM33 presented to the International Whaling Commission, Scientific Committee (SC64 meeting, Panama City, Panama, 2012). 14 p.     View Document Allen, B.M., R.L. Brownell, T.K. Yamada, and J.G. Mead. 2012. Review of current knowledge on Ziphius cavirostris in the North Pacific and North Indian oceans, including identification of knowledge gaps and suggestions for future research. Paper SC/64/SM34 presented to the International Whaling Commission, Scientific Committee (SC64 meeting, Panama City, Panama, 2012). 13 p.     View Document Amorocho, Diego F., F. Alberto Abreu-Grobois, Peter H. Dutton, and Richard D. Reina. 2012. Multiple distant origins for green sea turtles aggregating off Gorgona Island in the Columbian eastern Pacific. PLoS ONE 7(2): e31486 (12 p.).       Aschettino, Jessica M., Robin W. Baird, Daniel J. McSweeney, Daniel L. Webster, Gregory S. Schorr, Jessica L. Huggins, Karen K. Martien, Sabre D. Mahaffy, and Kristi L. West. 2012. Population structure of melon-headed whales (Peponocephala electra) in the Hawaiian Archipelago: Evidence of multiple populations based on photo identification. Marine Mammal Science 28(4):666-689.       Barlow, Jay. 2012. Passive acoustic monitoring of cetaceans, by Walter M.X. Zimmer [book review]. Marine Mammal Science 28(4):782-784.     View Document Baumann-Pickering, Simone, Anne E. Simonis, Marie A. Roch, Mark A. McDonald, Alba Solsona-Berga, Erin M. Oleson, Sean M. Wiggins, Robert L. Brownell Jr., and John A. Hildebrand. 2012. Spatio-temporal patterns of beaked whale echolocation signals in the North Pacific. Paper SC/64/SM21 presented to the International Whaling Commission, Scientific Committee (SC64 meeting, Panama City, Panama, 2012). 21 p.       Becker, E.A., D.G. Foley, K.A. Forney, J. Barlow, J.V. Redfern, and C.L. Gentemann. 2012. Forecasting cetacean abundance patterns to enhance management decisions. Endangered Species Research 16(2):97-112.       Benhardouze, Wafae, Mustapha Aksissou, and Manjula Tiwari. 2012. Incidental captures of sea turtles in the driftnet and longline fisehries in northwestern Morocco. Fisheries Research 127-128:125-132.       Benson, Scott R., and Peter H. Dutton. 2012. Sea turtles of the U.S. West Coast: life in the higher latitudes. In: Jeffrey A. Seminoff and Bryan P. Wallace (eds.), Sea turtles of the eastern Pacific: advances in research and conservation, p. 88-110. University of Arizona Press.       Blanco, Gabriela S., Stephen J. Morreale, Helen Bailey, Jeffrey A. Seminoff, Frank V. Paladino, and James R. Spotila. 2012. Post-nesting movements and feeding grounds of a resident East Pacific green turtle Chelonia mydas population from Costa Rica. Endangered Species Research 18(3):233-245.       Bradford, Amanda L., David W. Weller, Andre E. Punt, Yulia V. Ivashchenko, Alexander M. Burdin, Glenn R. VanBlaricom, and Robert L. Brownell Jr. 2012. Leaner leviathans: body condition variation in a critically endangered whale population. Journal of Mammalogy 93(1):251-266.     View Document Bradford, Amanda L., Karin A. Forney, Erin M. Oleson, and Jay Barlow. 2012. Line-transect abundance estimates of false killer whales (Pseudorca crassidens) in the pelagic region of the Hawaiian Exclusive Economic Zone and in the waters of the northwestern Hawaiian Islands. U.S. Department of Commerce, NOAA National Marine Fisheries Service, Pacific Islands Fisheries Science Center, Administrative Report H-12-02. 23 p.     View Document Brownell, R.L. Jr., and R.L. Pitman. 2012. Review of Perrin's beaked whale Mesoplodon perrini and suggestions for future research. Paper SC/64/SM31 presented to the International Whaling Commission, Scientific Committee (SC64 meeting, Panama City, Panama, 2012). 3 p.       Fearnbach, H., J. Durban, K. Parsons, and D. Claridge. 2012. Photographic mark-recapture analysis of local dynamics within an open population of dolphins. Ecological Applications 22(5):1689-1700.       Forney, Karin A., Megan C. Ferguson, Elizabeth A. Becker, Paul C. Fiedler, Jessica V. Redfern, Jay Barlow, Ignacio L. Vilchis, and Lisa T. Ballance. 2012. Habitat-based spatial models of cetacean density in the eastern Pacific Ocean. Endangered Species Research 16(2):113-133.       Gaos, Alexander R., Rebecca L. Lewison, Bryan P. Wallace, Ingrid L. Yanez, Michael J. Liles, Wallace J. Nichols, Andres Baquero, Carlos R. Hasbun, Mauricio Vasquez, Jose Urteaga, and Jeffrey A. Seminoff. 2012. Spatial ecology of critically endangered hawksbill turtles Eretmochelys imbricata: implications for management and conservation. Marine Ecology Progress Series 450:181-194.       Gaos, Alexander R., Rebecca R. Lewison, Bryan P. Wallace, Ingrid L. Yanez, Michael J. Liles, Andres Baquero, and Jeffrey A. Seminoff. 2012. Dive behaviour of adult hawksbills (Eretmochelys imbricata, Linnaeus 1766) in the eastern Pacific Ocean highlights shallow depth use by the species. Journal of Experimental Marine Biology and Ecology 432-433:171-178.       Gaspar, Philippe, Scott R. Benson, Peter H. Dutton, Adrien Reveillere, Guillaume Jacob, Cherina Meetoo, Amaury Dehecq, and Sabrina Fossette. 2012. Oceanic dispersal of juvenile leatherback turtles: going beyond passive drift modeling. Marine Ecology Progress Series 457:265-284.       Gerrodette, Tim, and Lorenzo Rojas-Bracho. 2012. Inference from limited data: A response to Lonergan. Marine Mammal Science 28(4):790-796.       Kinch, Jeff, Scott Benson, Paul Anderson, and Kevin Anana. 2012. Leatherback turtle nesting in the autonomous region of Bougainville, Papua New Guinea. Marine Turtle Newsletter 132:15-17.       La Mesa, Mario, Barbara Catalano, Karl-Hermann Kock, and Christopher D. Jones. 2012. Age and growth of the Antarctic dragonfish Parachaenichthys charcoti (Pisces, Bathydraconidae) from the southern Scotia Arc. Polar Biology 35(10):1545-1553.     View Document Lang, A.R., and K.K. Martien. 2012. Update on the use of a simulation-based approach to evaluate plausible levels of recruitment into the Pacific Coast Feeding Group of gray whales. Paper SC/64/AWMP4 presented to the International Whaling Commission, Scientific Committee (SC64 meeting, Panama City, Panama, 2012). 34 p.       LeDuc, R.G., B.L. Taylor, K.K. Martien, K.M. Robertson, R.L. Pitman, J.C. Salinas, A.M. Burdin, A.S. Kennedy, P.R. Wade, P.J. Clapham, and R.L. Brownell Jr. 2012. Genetic analysis of right whales in the eastern North Pacific confirms sever extirpation risk. Endangered Species Research 18(2):163-167.       Lessios, H.A., S. Lockhart, R. Collin, G. Sotil, P. Sanchez-Jerez, K.S. Zigler, A.F. Perez, M.J. Garrido, L.B. Geyer, G. Bernardi, V.D. Vacquier, R. Haroun, and B.D. Kessing. 2012. Phylogeography and bindin evolution in Arbacia, a sea urchin genus with an unusual distribution. Molecular Ecology 21(1):130-144.       MacDonald, Bradley D., Rebecca L. Lewison, Sheila V. Madrak, Jeffrey A. Seminoff, and Tomoharu Eguchi. 2012. Home ranges of East Pacific green turtles Chelonia mydas in a highly urbanized temperate foraging ground. Marine Ecology Progress Series 461:211-221.     View Document Matai, J., R. Kastner, G.R. Cutter Jr., and D.A. Demer. 2012. Automated techniques for detection and recognition of fishes using computer vision algorithms. In: Kresimir Williams, Chris Rooper, and John Harms (eds.), Report of the National Marine Fisheries Service Automated Image Processing Workshop (September 4-7, 2010, Seattle, Washington), p. 35-37. U.S. Department of Commerce, NOAA Technical Memorandum NMFS-F/SPO-121.       Miller, Carolyn A., Peter B. Best, Wayne L. Perryman, Mark F. Baumgartner, and Michael J. Moore. 2012. Body shape changes associated with reproductive status, nutritive condition and growth in right whales Eubalaena glacialis and E. australis. Marine Ecology Progress Series 459:135-156.     View Document Moore, Jeffery E., and David W. Weller. 2012. Probability of taking a western North Pacific gray whale during the proposed Makah Hunt. Paper SC/64/BRG9 presented to the International Whaling Commission, Scientific Committee (SC64 meeting, Panama City, Panama, 2012). 5 p.     View Document Moore, Jeffrey E., and Jay P. Barlow. 2012. Beaked whale abundance trends in the California Current, 1991-2008. Paper SC/64/SM11 presented to the International Whaling Commission, Scientific Committee (SC64 meeting, Panama City, Panama, 2012). 14 p.     View Document Morin, Phillip A., Frederick I. Archer, Victoria L. Pease, Brittany L. Hancock-Hanser, Kelly M. Robertson, Ryan M. Huebinger, Karen K. Martien, John W. Bickham, J. Craig George, Lianne D. Postma, and Barbara L. Taylor. 2012. An empirical comparison of SNPs and microsatellites for population structure, assignment, and demographic analyses of bowhead whale populations. Paper SC/64/AWMP3 presented to the International Whaling Commission, Scientific Committee (SC64 meeting, Panama City, Panama, 2012). 27 p.     View Document Morin, Phillip A., Sebastian Duchene, Nicole Lee, John Durban, and Diane Claridge. 2012. Preliminary analysis of mitochondrial genome phylogeography of Blainville's, Cuvier's and Gervias' beaked whales. Paper SC/64/SM14 presented to the International Whaling Commission, Scientific Committee (SC64 meeting, Panama City, Panama, 2012). 17 p.       Nagaoka, Shany Mayumi, Agnaldo Silva Martins, Robson Guimaraes dos Santos, Monica Maria Pereira Tognella, Erico Cabral de Oliveira Filho, and Jeffrey A. Seminoff. 2012. Diet of juvenile green turtles (Chelonia mydas) associating with artisanal fishing traps in a subtropical estuary in Brazil. Marine Biology 159(3):573-581.       Near, Thomas J., Alex Dornburg, Kristen L. Kuhn, Joseph T. Eastman, Jullian N. Pennington, Tomaso Patarnello, Lorenzo Zane, Daniel A. Fernandez, and Christopher D. Jones. 2012. Ancient climate change, antifreeze, and the evolutionary diversification of Antarctic fishes. Proceedings of the National Academy of Sciences of the United States of America 109(9):3434-3439.     View Document Perrin, William F., and Koen Van Waerebeek. 2012. The small-cetacean fauna of the west coast of Africa and Macaronesia: diversity and distribution. In: Conserving cetaceans and manatees in the western African region: compilation of articles based on the Scientific Symposium of the Western African Talks on Cetaceans and their Habitats (WATCH) (Adeje, Tenerife, 2007), p. 7-17. Convention on Migratory Species, CMS Technical Series no. 26.     View Document Perryman, Wayne L., and David W. Weller. 2012. Anomalous 2012 spring ice cover in the Bering Sea: predicted impacts on eastern North Pacific gray whales. Paper SC/64/BRG18 presented to the International Whaling Commission, Scientific Committee (SC64 meeting, Panama City, Panama, 2012). 3 p.       Pitman, Robert L., Lisa T. Ballance, and Charles A. Bost. 2012. Incidence of wing deformities ('angel wing') among masked boobies at Clipperton Island: life history consequences and insight into etiology. Wilson Journal of Ornithology 124(3):597-602.       Ridgway, Sam, Bernd Wursig, Alexey V. Yablokov, William F. Perrin, and Randall Davis. 2012. William Eugene Evans, 11 October 1930 - 12 October 1910. Marine Mammal Science 28(1):232-235.       Ruiz-Cooley, R.I., D.T. Engelhaupt, and J.G. Ortega-Ortiz. 2012. Contrasting C and N isotope ratios from sperm whale skin and squid between the Gulf of Mexico and Gulf of California: effect of habitat. Marine Biology 159(1):151-164.     View Document Rzhanov, Yuri, and George Cutter. 2012. StereoMeasure and StereoFeatures: Measuring fish and reconstructing scenes using underwater stereo photographs. In: Kresimir Williams, Chris Rooper, and John Harms (eds.), Report of the National Marine Fisheries Service Automated Image Processing Workshop (September 4-7, 2010, Seattle, Washington), p. 38-40. U.S. Department of Commerce, NOAA Technical Memorandum NMFS-F/SPO-121.       Seminoff, Jeffrey A., Joanna Alfaro-Shigueto, Diego Amorocho, Randall Arauz, Andres Baquero Gallegos, Didiher Chacon Chaverri, Alexander R. Gaos, Shaleyla Kelez, Jeffrey C. Mangel, Jose Urteaga, and Bryan P. Wallace. 2012. Biology and conservation of sea turtles in the eastern Pacific Ocean: a general overview. In: Jeffrey A. Seminoff and Bryan P. Wallace (eds.), Sea turtles of the eastern Pacific: advances in research and conservation, p. 11-38. University of Arizona Press.     View Document Sremba, Angela L., Brittany Hancock-Hanser, Trevor A. Branch, Rick L. LeDuc, and C. Scott Baker. 2012. Circumpolar diversity and geographic differentiation of mtDNA in the critically endangered Antarctic blue whale (Balaenoptera musculus intermedia). PLoS ONE 7(3): e32579 (13 p.).     View Document Stierhoff, Kevin, George Cutter, David Murfin, and David Demer. 2012. An overview of visual survey research and imaging technology development at the Southwest Fisheries Science Center. In: Kresimir Williams, Chris Rooper, and John Harms (eds.), Report of the National Marine Fisheries Service Automated Image Processing Workshop (September 4-7, 2010, Seattle, Washington), p. 13-17. U.S. Department of Commerce, NOAA Technical Memorandum NMFS-F/SPO-121.       Turner-Tomaszewicz, Calandra, and Jeffrey A. Seminoff. 2012. Turning off the heat: impacts of power plant decommissioning on greet turtle research in San Diego Bay. Coastal Management 40(1):73-87.      
2011
  CCAMLR Scientific Committee, Delegation of the USA. 2011. An MPA scenario for the Ross Sea region. CCAMLR Scientific Committee, 30th Meeting (Hobart, Australia, 24 October - 4 November 2011), Document no. SC-CAMLR-XXX/09.       Ferguson, J., J. Ashford, A. Pinones, J. Torres, W. Fraser, C. Jones, and M. Pinkerton. 2011. Connectivity and population structure in Pleuragramma antarcticum. CCAMLR Working Group on Fish Stock Assessment (Hobart, Australia, 10-21 October 2011), Document no. WG-FSA-11/19.       Jones, C., and S. Hanchet. 2011. The Ross Sea toothfish fishery: proposal for conditional transition of classification from exploratory to established. CCAMLR Working Group on Fish Stock Assessment (Hobart, Australia, 10-21 October 2011), Document no. WG-FSA-11/32.     View Document Polito, Michael J., Wayne Z. Trivelpiece, Nina J. Karnovsky, Elizabeth Ng, William P. Patterson, and Steve D. Emslie. 2011. Integrating stomach content and stable isotope analyses to quantify the diets of Pygoscelid penguins. PLoS ONE 6(10): e26642 (10 p.).      
2012
  Kinzey, D., G. Watters, and C. Reiss. 2012. Effects of recruitment variability and natural mortality on Generalised Yield Model projections and the CCAMLR Decision Rules for Antarctic krill. CCAMLR Working Group on Ecosystem Monitoring and Management (Santa Cruz de Tenerife, Spain, 2-13 July 2012), Document no. WG-EMM-12/26.     View Document Koslow, Tony, Laura Rogers-Bennett, and Sam McClatchie. 2012. Report of the CalCOFI Committee 2011. CalCOFI Reports 53:5-11.     View Document Pitman, R.L., and R.L. Brownell Jr. 2012. Review of current knowledge on pygmy beaked whale Mesoplodon peruvianus including identification of knowledge gaps and suggestions for future research. Paper SC/64/SM30 presented to the International Whaling Commission, Scientific Committee (SC64 meeting, Panama City, Panama, 2012). 5 p.     View Document Robertson, K.M., B.L. Taylor, and R.L. Brownell Jr. 2012. A status update on IWC samples held in the Southwest Fisheries Science Center's marine mammal and turtle molecular research sample collection. Paper SC/64/SD1 presented to the International Whaling Commission, Scientific Committee (SC64 meeting, Panama City, Panama, 2012). 2 p.     View Document Suntsov, Andrey, J. Anthony Koslow, and William Watson. 2012. The spatial structure of coastal ichthyoplankton assemblages off central and southern California. CalCOFI Reports 53:153-170.     View Document Tiedemann, R., F. Cipriano, P.A. Morin, A.R. Hoelzel, P. Palsboll, R. Waples, A. Natoli, L. Bachmann, L. Postma, M. Double, C. Pampoulie, H. Skaug, C.S. Baker, and Jennifer Jackson. 2012. Updated guidelines for DNA data quality control and error rate estimation, for genetic studies relevant to IWC management advice. Paper SC/64/SD2 presented to the International Whaling Commission, Scientific Committee (SC64 meeting, Panama City, Panama, 2012). 12 p.     View Document Urban R., J., D. Weller, O. Tyurneva, S. Swartz, A. Bradford, Y. Yakovlev, O. Sychenko, H. Rosales N., S. Martinez A., A. Burdin, and A. Gomez-Gallardo U. 2012. Report on the photographic comparison of the western and Mexican gray whale catalogues. Paper SC/64/BRG13 (revised) presented to the International Whaling Commission, Scientific Committee (SC64 meeting, Panama City, Panama, 2012). 6 p.       Yamada, T.K., Y. Tajima, A. Yatabe, and R.L. Brownell. 2012. Summary of current knowledge on Mesoplodon ginkgodens from the seas around Japan and review of North American data. Paper SC/64/SM28 presented to the International Whaling Commission, Scientific Committee (SC64 meeting, Panama City, Panama, 2012).       Yamada, T.K., Y. Tajima, A. Yatabe, S. Kitamura, T. Isobe, and R.L. Brownell. 2012. Summary of current knowledge on Mesoplodon stejnegeri mainly from the seas around Japan and review of North American data. Paper SC/64/SM25 presented to the International Whaling Commission, Scientific Committee (SC64 meeting, Panama City, Panama, 2012).     View Document Yamada, Tadasu K., Yuko Tajima, Akiko Yatabe, B.M. Allen, and R.L. Brownell Jr. 2012. Review of current knowledge on Hubbs' beaked whale, Mesoplodon carlhubbsi, from the seas around Japan and data from North America. Paper SC/64/SM27 presented to the International Whaling Commission, Scientific Committee (SC64 meeting, Panama City, Panama, 2012). 8 p.     View Document Yamada, Tadasu K., Yuko Tajima, Akiko Yatabe, R. Pitman, and R.L. Brownell Jr. 2012. Review of current knowledge on Indopacetus pacificus including identification of knowledge gaps and suggestions for future research. Paper SC/64/SM26 presented to the International Whaling Commission, Scientific Committee (SC64 meeting, Panama City, Panama, 2012). 8 p.     View Document Yao, Chiuo-Ju, Wei-Cheng Yang, Yan-Jun Chen, Jun-Tsong Lin, Robert L. Brownell Jr., and Lien-Siang Chou. 2012. Two Longman's beaked whales (Indopacetus pacificus) from Taiwan. Paper SC/64/SM32 presented to the International Whaling Commission, Scientific Committee (SC64 meeting, Panama City, Panama, 2012). 13 p.      
2011
View Document Galletti Vernazzani, Barbara, Carole A. Carlson, Elsa Cabrera, and Robert L. Brownell Jr. 2011. Chilean blue whales off Isla Grande de Chiloe, 2004-2010: distribution, photo-identification and behavior. Paper SC/63/SH6 presented to the International Whaling Commission, Scientific Committee (SC63 meeting, Tromso, Norway, 2011). 11 p.      
2012
  Alter, S. Elizabeth, Howard C. Rosenbaum, Lianne D. Postma, Peter Whitridge, Cork Gaines, Diana Weber, Mary G. Egan, Melissa Lindsay, George Amato, Larry Dueck, Robert L. Brownell Jr., Mads-Peter Heide-Jorgensen, Kristin L. Laidre, Gisella Caccone, and Brittany L. Hancock. 2012. Gene flow on ice: the role of sea ice and whaling in shaping Holarctic genetic diversity and population differentiation in bowhead whales (Balaena mysticetus). Ecology and Evolution 2(11):2895-2911.       Ashford, Julian, Michael Dinniman, Cassandra Brooks, Allen H. Andrews, Eileen Hofmann, Gregor Cailliet, Christopher Jones, and Nakul Ramanna. 2012. Does large-scale ocean circulation structure life history connectivity in Antarctic toothfish (Dissostichus mawsoni)? Canadian Journal of Fisheries and Aquatic Sciences 69(12):1903-1919.       Attard, Catherine R.M., Luciano B. Beheregaray, K. Curt S. Jenner, Peter C. Gill, Micheline-Nicole Jenner, Margaret G. Morrice, Kelly M. Robertson, and Luciana M. Moller. 2012. Hybridization of Southern Hemisphere blue whale subspecies and a sympatric area off Antarctica: impacts of whaling or climate change? Molecular Ecology 21(23):5715-5727.       Frechette, Danielle, Anne-Marie K. Osterback, Sean A. Hayes, Morgan H. Bond, Jonathan W. Moore, Scott A. Shaffer, and James T. Harvey. 2012. Assessing avian predation on juvenile salmonids using passive integrated transponder tag recoveries and mark-recapture methods. North American Journal of Fisheries Management 32(6):1237-1250.       Hannesson, Rognvaldur, and Samuel F. Herrick Jr. 2012. Local feed fish supplies and possible offshore aquaculture in California. Aquaculture Research 44(1):1-7.       Hitchman, Sean M., Nathalie B. Reyns, and Andrew R. Thompson. 2012. Larvae define spawning habitat of bocaccio rockfish Sebastes paucispinis within and around a large southern California marine reserve. Marine Ecology Progress Series 465:227-242.       LeRoux, Robin A., Peter H. Dutton, F. Alberto Abreu-Grobois, Cynthia J. Lagueux, Cathi L. Campbell, Eric Delcroix, Johan Chevalier, Julia A. Horrocks, Zandy Hillis-Starr, Sebastian Troeng, Emma Harrison, and Seth Stapleton. 2012. Re-examination of population structure and phylogeography of hawksbill turtles in the Wider Caribbean using longer mtDNA sequences. Journal of Heredity 103(6):806-820.     View Document Madigan, Daniel J., Aaron B. Carlisle, Heidi Dewar, Owyn E. Snodgrass, Steven Y. Litvin, Fiorenza Micheli, and Barbara A. Block. 2012. Stable isotope analysis challenges wasp-waist food web assumptions in an upwelling pelagic ecosystem. Scientific Reports 2: article 654 (10 p.).       Shamblin, Brian M., Alan B. Bolten, Karen A. Bjorndal, Peter H. Dutton, Janne T. Nielsen, F. Alberto Abreu-Grobois, Kimberly J. Reich, Blair E. Witherington, Dean A. Bagley, Llewellyn M. Ehrhart, Anton D. Tucker, David S. Addison, Alejandro Arenas, Chris Johnson, Raymond R. Carthy, Margaret M. Lamont, Mark G. Dodd, Michael S. Gaines, Erin LaCasella, and Campbell J. Nairn. 2012. Expanded mitochondrial control region sequences increase resolution of stock structure among North Atlantic loggerhead turtle rookeries. Marine Ecology Progress Series 469:145-160.      
2011
View Document Baker, C. Scott, Beth Slikas, R.L. Brownell Jr., and Paul R. Wade. 2011. Stock structure of western North Pacific minke whales based on mtDNA haplotypes from Korean 'bycatch' and Japanese 'bycatch' and scientific whaling, in relation to Hypothesis III. Paper SC/63/RMP16 presented to the International Whaling Commission, Scientific Committee (SC63 meeting, Tromso, Norway, 2011). 7 p.     View Document Brownell, R.L. Jr., B.M. Allen, and J.G. Mead. 2011. True's beaked whale, Mesoplodon mirus, in the North Atlantic Ocean: distribution, biology, status and threats. Paper SC/63/SM20 presented to the International Whaling Commission, Scientific Committee (SC63 meeting, Tromso, Norway, 2011). 7 p.      
2012
  Danner, Eric M., Forrest S. Melton, Andrew Pike, Hirofumi Hashimoto, Andrew Michaelis, Balaji Rajagopalan, Jason Caldwell, Lynn DeWitt, Steven Lindley, and Ramakrishna R. Nemani. 2012. River temperature forecasting: a coupled-modeling framework for management of river habitat. IEEE Journal of Selected Topics in Applied Earth Observations and Remote Sensing 5(6):1752-1760.       McClatchie, Sam. 2012. Sardine biomass is poorly correlated with the Pacific Decadal Oscillation off California. Geophysical Research Letters 39:L13703 (6 p.).     View Document Pacific Fishery Management Council (Groundfish Essential Fish Habitat Review Committee). 2012. Pacific coast groundfish 5-year review of essential fish habitat. Report to the Pacific Fishery Management Council, Phase 1: New information. Pacific Fishery Management Council, Portland, Oregon. 427 p.      
2011
View Document Allen, B.M., J.G. Mead, and R.L. Brownell. 2011. Species review of Blainville's beaked whale, Mesoplodon densirostris. Paper SC/63/SM16 presented to the International Whaling Commission, Scientific Committee (SC63 meeting, Tromso, Norway, 2011). 18 p.     View Document Allen, B.M., R.L. Brownell, and J.G. Mead. 2011. Species review of Cuvier's beaked whale, Ziphius cavirostris. Paper SC/63/SM17 presented to the International Whaling Commission, Scientific Committee (SC63 meeting, Tromso, Norway, 2011). 8 p.      
2012
  Stewart, J.S., E.L. Hazen, D.G. Foley, S.J. Bograd, and W.F. Gilley. 2012. Marine predator migration during range expansion: Humboldt squid Dosidicus gigas in the northern California Current System. Marine Ecology Progress Series 471:135-150.      
2011
View Document Reeves, Randall R., Robert L. Brownell Jr., Vladimir Burkanov, Michael C.S. Kingsley, Lloyd F. Lowry, and Barbara L. Taylor. 2011. Sustainability assessment of beluga (Delphinapterus leucas) live-capture removals in the Sakhalin-Amur region, Okhotsk Sea, Russia: Report of an independent scientific review panel. IUCN Species Survival Commission, Occasional Paper no. 44 (34 p.).      
2012
View Document Blackhart, Kristan, Stephen K. Brown, Bryant Chesney, E.J. Dick, Kirsten Larsen, Michael O'Farrell, Korie Schaeffer, Brian Spence, Kevin Stierhoff, Dale Sweetnam, and Mary Yoklavich. 2012. Regional habitat assessment prioritization for California stocks. Report of the Southwest Regional Habitat Assessment Prioritization Working Group. U.S. NOAA National Marine Fisheries Service. 36 p.     View Document Johnson, Rachel C., Peter K. Weber, John D. Wikert, Michelle L. Workman, R. Bruce MacFarlane, Marty J. Grove, and Alex K. Schmitt. 2012. Managed metapopulations: Do salmon hatchery 'sources' lead to in-river 'sinks' in conservation? PLoS ONE 7(2): e28880 (11 p.).       Keller, Jennifer M., Lily Ngai, Joanne Braun McNeill, Lawrence D. Wood, Kelly R. Stewart, Steven G. O'Connell, and John R. Kucklick. 2012. Perfluoroalkyl contaminants in plasma of five sea turtle species: comparisons in concentration and potential helath risks. Environmental Toxicology and Chemistry 31(6):1223-1230.       Kiernan, Joseph D., and Peter B. Moyle. 2012. Flows, droughts, and aliens: factors affecting the fish assemblage in a Sierra Nevada, California, stream. Ecological Applications 22(4):1146-1161.       Kiernan, Joseph D., Peter B. Moyle, and Patrick K. Crain. 2012. Restoring native fish assemblages to a regulated California stream using the natural flow regime concept. Ecological Applications 22(5):1472-1482.     View Document Klamath River Technical Team. 2012. Ocean abundance projections and prospective harvest levels for Klamath River fall Chinook, 2012 season. Klamath River Technical Team. 29 p.     View Document Klamath River Technical Team. 2012. Klamath River fall Chinook salmon age-specific escapement, river harvest, and run size estimates, 2011 run. Klamath River Technical Team. 19 p.       Krause, Jeffrey W., Mark A. Brzezinski, Tracy A. Villareal, and Cara Wilson. 2012. Increased kinetic efficiency for silicic acid uptake as a driver of summer diatom blooms in the North Pacific subtropical gyre. Limnology and Oceanography 57(4):1084-1098.       Krigsman, Lisa M., Mary M. Yoklavich, E.J. Dick, and Guy R. Cochrane. 2012. Models and maps: predicting the distribution of corals and other benthic macro-invertebrates in shelf habitats. Ecosphere 3(1):art3 (16 p.).       Link, J.S., T.F. Ihde, C.J. Harvey, S.K. Gaichas, J.C. Field, J.K.T. Brodziak, H.M. Townsend, and R.M. Peterman. 2012. Dealing with uncertainty in ecosystem models: The paradox of use for living marine resource management. Progress in Oceanography 102:102-114.       MacCall, Alec D. 2012. Data-limited management reference points to avoid collapse of stocks dependent on learned migration behaviour. ICES Journal of Marine Science 69(2):267-270.       MacCall, Alec D., Kevin T. Hill, Paul Crone, and Robert Emmett. 2012. Weak evidence for sardine collapse. Proceedings of the National Academy of Sciences of the United States of America 109(19):E1131.     View Document MacCall, Alec, E.J. Dick, Braden Soper, and Maria DeYorio. 2012. Sources of abundance information for 65 unassessed stocks of West Coast groundfish. In: Assessment methods for data-moderate stocks: Report of the Methodology Review Panel Meeting (NMFS Alaska Fisheries Science Center, Seattle, Washington, 26-29 June 2012), Appendix 4, p. 24-86. Pacific Fishery Management Council, Portland, Oregon.       Mancini, Agnese, Volker Koch, Jeffrey A. Seminoff, and Benedicte Madon. 2012. Small-scale gill-net fisheries cause massive green turtle Chelonia mydas mortality in Baja California Sur, Mexico. Oryx 46(1):69-77.       Mason, Janet, Rosemary Kosaka, Aaron Mamula, and Cameron Speir. 2012. Effort changes around a marine reserve: The case of the California Rockfish Conservation Area. Marine Policy 36(5):1054-1063.     View Document Matkin, Craig O., John W. Durban, Eva L. Saulitis, Russel D. Andrews, Janice M. Straley, Dena R. Matkin, and Graeme M. Ellis. 2012. Contrasting abundance and residency patterns of two sympatric populations of transient killer whales (Orcinus orca) in the northern Gulf of Alaska. Fishery Bulletin (U.S.) 110(2):143-155.       Maxwell, Sara M., Elliott L. Hazen, Lance E. Morgan, Helen Bailey, and Rebecca Lewison. 2012. Finding balance in fisheries management. Science 336(6080):413.       McClatchie, Sam, Robert Cowen, Karen Nieto, Adam Greer, Jessica Y. Luo, Cedric Guigand, David Demer, David Griffith, and Daniel Rudnick. 2012. Resolution of fine biological structure including small narcomedusae across a front in the Southern California Bight. Journal of Geophysical Research 117:C04020 (18 p.).       Morin, Phillip A., Frederick I. Archer, Victoria L. Pease, Brittany L. Hancock-Hanser, Kelly M. Robertson, Ryan M. Huebinger, Karen K. Martien, John W. Bickham, J. Craig George, Lianne D. Postma, and Barbara L. Taylor. 2012. Empirical comparison of single nucleotide polymorphisms and microsatellites for population and demographic analyses of bowhead whales. Endangered Species Research 19(2):129-147.      
2011
View Document Barkley, Yvonne, Julie N. Oswald, James V. Carretta, Shannon Rankin, Alexis Rudd, and Marc O. Lammers. 2011. Comparison of real-time and post-cruise acoustic species identification of dolphin whistles using ROCCA (Real-time Odontocete Call Classification Algorithm). U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-473, 29 p.     View Document Spence, Brian C., Walter G. Duffy, John Carlos Garza, Bret C. Harvey, Susan M. Sogard, Laurie A. Weitkamp, Thomas H. Williams, and David A. Boughton. 2011. Historical occurrence of coho salmon (Oncorhynchus kisutch) in streams of the Santa Cruz Mountain region of California: response to an Endangered Species Act petition to delist coho salmon south of San Francisco Bay. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-472, 113 p.      
2012
  Hutchinson, Melanie, John H. Wang, Yonat Swimmer, Kim Holland, Suzanne Kohin, Heidi Dewar, James Wraith, Russ Vetter, Craig Heberer, and Jimmy Martinez. 2012. The effects of a lanthanide metal alloy on shark catch rates. Fisheries Research 131-133:45-51.      
2011
View Document Van Cise, Amy (ed.). 2011. AMLR 2009/10 field season report: objectives, accomplishments and tentative conclusions. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-470, 52 p.      
2012
  Howell, Evan A., Steven J. Bograd, Carey Morishige, Michael P. Seki, and Jeffrey J. Polovina. 2012. On North Pacific circulation and associated marine debris concentration. Marine Pollution Bulletin 65(1-3):16-22.       Huckstadt, L.A., P.L. Koch, B.I McDonald, M.E. Goebel, D.E. Crocker, and D.P. Costa. 2012. Stable isotope analyses reveal individual variability in the trophic ecology of a top marine predator, the southern elephant seal. Oecologia 169(2):395-406.     View Document Huff, David D., Steven T. Lindley, Brian K. Wells, and Fei Chai. 2012. Green sturgeon distribution in the Pacific Ocean estimated from modeled oceanographic features and migration behavior. PLoS ONE 7(9): e45852 (12 p.).      
2011
View Document Fleming, Alyson, and Jennifer Jackson. 2011. Global review of humpback whales (Megaptera novaeangliae). U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-474, 206 p.      
2012
View Document Barrett, Brian, Rosemary Kosaka, and David Tomberlin. 2012. Road surface erosion on the Jackson Demonstration State Forest: results of a pilot study. In: Proceedings of the Coast Redwood Forests in a Changing California: a symposium for scientists and managers, p. 13-21. U.S. Forest Service, Pacific Southwest Research Station, General Technical Report PSW-GTR-238.     View Document Becker, Elizabeth A., Karin A. Forney, Megan C. Ferguson, Jay Barlow, and Jessica V. Redfern. 2012. Predictive modeling of cetacean densities in the California Current ecosystem based on summer/fall ship surveys in 1991-2008. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-499, 45 p.       Beltran, Francisco, Bruno Sanso, Ricardo T. Lemos, and Roy Mendelssohn. 2012. Joint projections of North Pacific sea surface temperature from different global climate models. Environmetrics 23(5):451-465.       Bjorkstedt, Eric P. 2012. Ricker model. In: Alan Hastings and Louis J. Gross (eds.), Encyclopedia of theoretical ecology, p. 632-636. University of California Press.       Booth, J. Ashley T., Erika E. McPhee-Shaw, Paul Chua, Eric Kingsley, Mark Denny, Roger Phillips, Steven J. Bograd, Louis D. Zeidberg, and William F. Gilly. 2012. Natural intrusions of hypoxic, low pH water into nearshore marine environments on the California coast. Continental Shelf Research 45:108-115.       Boughton, David A., Christine Hatch, and Ethan Mora. 2012. Identifying distinct thermal components of a creek. Water Resources Research 48: W09506 (13 p.).       Buonaccorsi, Vincent P., Carol A. Kimbrell, Eric A. Lynn, and John R. Hyde. 2012. Comparative population genetic analysis of bocaccio rockfish Sebastes paucispinis using anonymous and gene-associated simple sequence repeat loci. Journal of Heredity 103(3):391-399.       Caballero, S., D. Cardenosa, G. Soler, and J. Hyde. 2012. Application of multiplex PCR approaches for shark molecular identification: feasibility and applications for fisheries management and conservation in the Eastern Tropical Pacific. Molecular Ecology Resources 12(2):233-237.     View Document California Hatchery Scientific Review Group. 2012. California Hatchery Review Report. Prepared for the U.S. Fish and Wildlife Service and Pacific States Marine Fisheries Commission. 102 p. Appendices available at http://cahatcheryreview.com/reports/.       Campbell, N.R., S.J. Amish, V.L. Pritchard, K.S. McKelvey, M.K. Young, M.K. Schwartz, J.C. Garza, G. Luikart, and S.R. Narum. 2012. Development and evaluation of 200 novel SNP assays for population genetic studies of westslope cutthroat trout and genetic identification of related taxa. Molecular Ecology Resources 12(5):942-949.       Caro, Tim, Theodore Stankowich, Sarah L. Mesnick, Daniel P. Costa, and Karrie Beeman. 2012. Pelage coloration in pinnipeds: functional considerations. Behavioral Ecology 23(4):765-774.     View Document Carretta, James V., and Lyle Enriquez. 2012. Marine mammal and seabird bycatch in California gillnet fisheries in 2011. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-500, 14 p.     View Document Currie, David R., Sam McClatchie, John F. Middleton, and Sasi Nayar. 2012. Biophysical factors affecting the distribution of demersal fish around the head of a submarine canyon off the Bonney Coast, South Australia. PLoS ONE 7(1): e30138.     View Document Demer, David A. (ed.). 2012. 2007 survey of rockfishes in the Southern California Bight using the collaborative optical-acoustic survey technique. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-498, 110 p.     View Document Demer, David A. (ed.). 2012. 2003 survey of rockfishes in the Southern California Bight using the collaborative optical-acoustic survey technique. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-496, 82 p.     View Document Demer, David A. (ed.). 2012. 2004 survey of rockfishes in the Southern California Bight using the collaborative optical-acoustic survey technique. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-497, 96 p.       Demer, David A., and Juan P. Zwolinski. 2012. Reply to MacCall et al.: Acoustic-trawl survey results provide unique insight to sardine stock decline. Proceedings of the National Academy of Sciences of the United States of America 109(19):E1132-E1133.     View Document Demer, David A., Juan P. Zwolinski, Kyle A. Byers, George R. Cutter, Josiah S. Renfree, Thomas S. Sessions, and Beverly J. Macewicz. 2012. Prediction and confirmation of seasonal migration of Pacific sardine (Sardinops sagax) in the California Current Ecosystem. Fishery Bulletin (U.S.) 110(1):52-70.     View Document Dick, E.J., Alec MacCall, Braden Soper, and Maria DeYorio. 2012. Exploration of Bayesian stock reduction analysis for assessment of West Coast groundfish. Report submitted to the Review Panel Meeting on Assessment Methods for Data-Moderate Stocks (26-29 June 2012, Seattle, Washington). Pacific Fishery Management Council, Portland, Oregon. 27 p.       Domeier, Michael L., Nicole Nasby-Lucas, and Daniel M. Palacios. 2012. The northeastern Pacific white shark Shared Offshore Foraging Area (SOFA): A first examination and description from ship observations and remote sensing. In: Michael L. Domeier (ed.), Global perspectives on the biology and life history of the white shark, p. 147-158. CRC Press.       Duchene, Sebastian, Amy Frey, Alonzo Alfaro-Nunez, Peter H. Dutton, M. Thomas P. Gilbert, and Phillip A. Morin. 2012. Marine turtle mitogenome phylogenetics and evolution. Molecular Phylogenetics and Evolution 65(1):241-250.     View Document Durban, J.W., and R.L. Pitman. 2012. Antarctic killer whales make rapid, round-trip movements to subtropical waters: evidence for physiological maintenance migrations? Biology Letters 8(2):274-277.       Eguchi, Tomoharu, Jeffrey A. Seminoff, Robin A. LeRoux, Dan Prosperi, Donna L. Dutton, and Peter H. Dutton. 2012. Morphology and growth rates of the green sea turtle (Chelonia mydas) in a northern-most temperate foraging ground. Herpetologica 68(1):76-87.       Espinasse, Boris, Meng Zhou, Yiwu Zhu, Elliott L. Hazen, Ari S. Friedlaender, Douglas P. Nowacek, Dezhang Chu, and Francois Carlotti. 2012. Austral fall-winter transition of mesozooplankton assemblages and krill aggregations in an embayment west of the Antarctic Peninsula. Marine Ecology Progress Series 452:63-80.       Fearnbach, Holly, John W. Durban, Sally A. Mizroch, Steve Barbeaux, and Paul R. Wade. 2012. Winter observations of a group of female and immature sperm whales in the high-latitude waters near the Aleutian Islands, Alaska. Marine Biodiversity Records 5:e13 (4 p.).       Gerrodette, Tim, Robert Olson, Stephen Reilly, George Watters, and William Perrin. 2012. Ecological metrics of biomass removed by three methods of purse-seine fishing for tunas in the eastern tropical Pacific Ocean. Conservation Biology 26(2):248-256.       Gustafson, Richard G., Michael J. Ford, Peter B. Adams, Jonathan S. Drake, Robert L. Emmett, Kurt L. Fresh, Mindy Rowse, Elizabeth A.K. Spangler, Robert E. Spangler, David J. Teel, and Matthew T. Wilson. 2012. Conservation status of eulachon in the California Current. Fish and Fisheries 13(2):121-138.       Hayes, Sean A., Chad V. Hanson, Devon E. Pearse, Morgan H. Bond, John Carlos Garza, and R. Bruce MacFarlane. 2012. Should I stay or should I go? The influence of genetic origin on emigration behavior and physiology of resident and anadromous juvenile Oncorhynchus mykiss. North American Journal of Fisheries Management 32(4):772-780.       Hayes, Sean A., Morgan H. Bond, Brian K. Wells, Chad V. Hanson, Andrew W. Jones, R. Bruce MacFarlane. 2012. Using archival tags to infer habitat use of Central California steelhead and coho salmon. In: Advances in fish tagging and marking technology. American Fisheries Society Symposium 76:471-492.       Hazen, Elliott L., Sara M. Maxwell, Helen Bailey, Steven J. Bograd, Mark Hamann, Philippe Gaspar, Brendan J. Godley, and George L. Shillinger. 2012. Ontogeny in marine tagging and tracking science: technologies and data gaps. Marine Ecology Progress Series 457:221-240.       Hazen, Elliott Lee, and Larry B. Crowder. 2012. Fisheries Ecology. In: Alan Hastings and Louis J. Gross (eds.), Encyclopedia of theoretical ecology, p. 280-287. University of California Press.     View Document Henry, Annette, Barbara Taylor, Lorenzo Rojas-Bracho, Shannon Rankin, Armando Jaramillo-Legoretta, Tom Akamatsu, Jay Barlow, Tim Gerrodette, Candice Hall, Alan Jackson, Jessica Redfern, Rene Swift, and Nick Tregenza. 2012. Cruise report for the Vaquita Expedition in 2008 conducted aboard NOAA Ship David Starr Jordan, R/V Koipai Yu-Xa, and the Vaquita Express. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-495, 41 p.     View Document Hill, Kevin T., Paul R. Crone, Nancy C.H. Lo, David A. Demer, Juan P. Zwolinski, and Beverly J. Macewicz. 2012. Assessment of the Pacific sardine resource in 2012 for U.S. management in 2013. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-501, 157 p.     View Document Jackson, Alan R. 2012. A description of the tuna-porpoise observer data collected by the U.S. National Marine Fisheries Service from 1971 to 1990. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-493, 406 p.     View Document MacCall, Alec D. 2012. A data-poor assessment of the US wreckfish fishery. Briefing book report to the Scientific and Statistical Committee Meeting, October 23-25, 2012. South Atlantic Fishery Management Council, North Charleston, South Carolina. 10 p.     View Document Michael R. O'Farrell, William H. Satterthwaite, and Brian C. Spence. 2012. California coastal Chinook salmon: status, data, and feasibility of alternative fishery management strategies. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-494, 29 p.       Sigourney, Douglas B., Stephan B. Munch, and Benjamin H. Letcher. 2012. Combining a Bayesian nonparametric method with a hierarchical framework to estimate individual and temporal variation in growth. Ecological Modelling 247:125-134.     View Document Tiwari, Manjula. 2012. Sea turtles in the southern Nicobar Islands: results of surveys from February-May 1991. Indian Ocean Turtle Newsletter 16:14-18.      
2011
View Document Hill, Kevin T., Paul R. Crone, Nancy C.H. Lo, Beverly J. Macewicz, Emmanis Dorval, Jennifer D. McDaniel, and Yuhong Gu. 2011. Assessment of the Pacific sardine resource in 2011 for U.S. management in 2012. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-487, 16 p.     View Document Jones, Benjamin, Shannon Rankin, and Eric Archer. 2011. Fin whale acoustics as a tool to assess stock structure in the North Pacific. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-485.     View Document Lo, Nancy C.H., Beverly J. Macewicz, and David A. Griffith. 2011. Spawning biomass of Pacific sardine (Sardinops sagax) off U.S. in 2011. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-486, 38 p.      
2012
  Bailey, Helen, Sabrina Fossette, Steven J. Bograd, George L. Shillinger, Alan M. Swithenbank, Jean-Yves Georges, Philippe Gaspar, K.H. Patrik Stromberg, Frank V. Paladino, James R. Spotila, Barbara A. Block, and Graeme C. Hays. 2012. Movement patterns for a critically endangered species, the leatherback turtle (Dermochelys coriacea), linked to foraging success and population status. PLoS ONE 7(5): e36401 (8 p.).      
2011
  Bradford, Amanda L., David W. Weller, Alexander M. Burdin, and Robert L. Brownell Jr. 2011. Using barnacle and pigmentation characteristics to identify gray whale calves on their feeding grounds. Marine Mammal Science 27(3):644-651.      
2012
View Document Arzayus, Krisa, Hernan E. Garcia, Steve Hankin, Elizabeth Jewett, and Roy Mendelssohn. 2012. Toward an ocean acidification data stewardship system. Earth System Monitor 19(1):5.       Bailey, Helen, Scott R. Benson, George L. Shillinger, Steven J. Bograd, Peter H. Dutton, Scott A. Eckert, Stephen J. Morreale, Frank V. Paladino, Tomoharu Eguchi, David G. Foley, Barbara A. Block, Rotney Piedra, Creusa Hitipeuw, Ricardo F. Tapilatu, and James R. Spotila. 2012. Identification of distinct movement patterns in Pacific leatherback turtle populations influenced by ocean conditions. Ecological Applications 22(3):735–747.      
2011
  Amano, Masao, Tadasu K. Yamada, Robert L. Brownell Jr., and Yoshikazu Uni. 2011. Age determination and reproductive traits of killer whales entrapped in ice off Aidomari, Hoddaido, Japan. Journal Of Mammalogy 92(2):275-282.       Godard-Codding, Celine A.J., Rebecca Clark, Maria Cristina Fossi, Letizia Marsili, Silvia Maltese, Adam G. West, Luciano Valenzuela, Victoria Rowntree, Ildiko Polyak, John C. Cannon, Kim Pinkerton, Nadia Rubio-Cisneros, Sarah L. Mesnick, Stephen B. Cox, Iain Kerr, Roger Payne, and John J. Stegeman. 2011. Pacific Ocean-wide profile of CYP1A1 expression, stable carbon and nitrogen isotope ratios, and organic contaminant burden in sperm whale skin biopsies. Environmental Health Perspectives 119(3):337-343.       Harris, Heather S., Scott R. Benson, Kirsten V. Gilardi, Robert H. Poppenga, Thierry M. Work, Peter H. Dutton, and Jonna A.K. Mazet. 2011. Comparative health assessment of western Pacific leatherback turtles (Dermochelys coriacea) foraging off the coast of California, 2005-2007. Journal of Wildlife Diseases 47(2):321-337.       Nur, Nadav, Jaime Jahncke, Mark P. Herzog, Julie Howar, K. David Hyrenbach, Jeannette E. Zamon, David G. Ainley, John A. Wiens, Ken Morgan, Lisa T. Ballance, and Diana Stralberg. 2011. Where the wild things are: predicting hotspots of seabird aggregations in the California Current System. Ecological Applications 21(6):2241-2257.      
2012
View Document Amaral, Ana R., Luciano B. Beheregaray, Kerstin Bilgmann, Dmitri Boutov, Luis Freitas, Kelly M. Robertson, Marine Sequeira, Karen A. Stockin, M. Manuela Coelho, and Luciana M. Moller. 2012. Seascape genetics of a globally distributed, highly mobile marine mammal: the short-beaked common dolphin (genus Delphinus). PLoS ONE 7(2): e31482 (14 p.).       Jefferson, Thomas A., Samuel K. Hung, Kelly M. Robertson, and Frederick I. Archer. 2012. Life history of the Indo-Pacific humpback dolphin in the Pearl River Estuary, southern China. Marine Mammal Science 28(1):84-104.      
2011
  Lemons, Garrett, Rebecca Lewison, Lisa Komoroske, Alexander Gaos, Chun-Ta Lai, Peter Dutton, Tomoharu Eguchi, Robin LeRoux, and Jeffrey A. Seminoff. 2011. Trophic ecology of green sea turtles in a highly urbanized bay: Insights from stable isotopes and mixing models. Journal of Experimental Marine Biology and Ecology 405(1-2):25-32.      
2012
  Almudevar, Anthony, and Eric C. Anderson. 2012. A new version of PRT software for sibling groups reconstruction with comments regarding several issues in the sibling reconstruction problem. Molecular Ecology Resources 12(1):164-178.       Amaral, Ana R., Luciano B. Beheregaray, Kerstin Bilgmann, Luis Freitas, Kelly M. Robertson, Marina Sequeira, Karen A. Stockin, M.M. Coelho, and Luciana M. Moller. 2012. Influences of past climatic changes on historical population structure and demography of a cosmopolitan marine predator, the common dolphin (genus Delphinus). Molecular Ecology 21(19):4854-4871.      
2011
  Chassot, Emmanuel, Sylvain Bonhommeau, Gabriel Reygondeau, Karen Nieto, Jeffrey J. Polovina, Martin Huret, Nicholas K. Dulvy, and Herve Demarcq. 2011. Satellite remote sensing for an ecosystem approach to fisheries management. ICES Journal of Marine Science 68(4):651-666.       Doyle, Miriam J., William Watson, Noelle M. Bowlin, and Seba B. Sheavly. 2011. Plastic particles in coastal pelagic ecosystems of the Northeast Pacific Ocean. Marine Environmental Research 71(1):41-52.       Jones, Christopher D., and Susanne J. Lockhart. 2011. Detecting vulnerable marine ecosystems in the Southern Ocean using research trawls and underwater imagery. Marine Policy 35(5):732-736.       Kurapov, A.L., D. Foley, P.T. Strub, G.D. Egbert, and J.S. Allen. 2011. Variational assimilation of satellite observations in a coastal ocean model off Oregon. Journal of Geophysical Research 116:C05006 (19 p.).       Mangel, Jeffrey C., Joanna Alfaro-Shigueto, Matthew J. Witt, Peter H. Dutton, Jeffrey A. Seminoff, and Brendan J. Godley. 2011. Post-capture movements of loggerhead turtles in the southeastern Pacific Ocean assessed by satellite tracking. Marine Ecology Progress Series 433:261-272.       Wade, P.R., A. De Robertis, K.R. Hough, R. Booth, A. Kennedy, R.G. LeDuc, L. Munger, J. Napp, K.E.W., Shelden, S. Rankin, O. Vasquez, C. Wilson. 2011. Rare detections of North Pacific right whales in the Gulf of Alaska, with observations of their potential prey. Endangered Species Research 13(2):99-109.      
2012
  Lemos, Ricardo T., and Bruno Sanso. 2012. Conditionally linear models for non-homogeneous spatial random fields. Statistical Methodology 9(1-2):275-284.      
2011
  Herman, Louis M., Adam A. Pack, Kathryn Rose, Alison Craig, Elia Y.K. Herman, Siri Hakala, and Aliza Milette. 2011. Resightings of humpback whales in Hawaiian waters over spans of 10-32 years: Site fidelity, sex ratios, calving rates, female demographics, and the dynamics of social and behavioral roles of individuals. Marine Mammal Science 27(4):736-768.       Lewison, R.L., C.U. Soykan, T. Cox, H. Peckham, N. Pilcher, N. LeBoeuf, S. McDonald, J. Moore, C. Safina, and L.B. Crowder. 2011. Ingredients for addressing the challenges of fisheries bycatch. Bulletin of Marine Science 87(2):235-250.       Mancini, Agnese, Jesse Senko, Ricardo Borquez-Reyes, Juan Guzman Poo, Jeffrey A. Seminoff, and Volker Koch. 2011. To poach or not to poach an endangered species: elucidating the conomic and social drivers behind illegal sea turtle hunting in Baja California Sur, Mexico. Human Ecology 39(6):743-756.       Ross, Peter S., Jay Barlow, Thomas A. Jefferson, Brendan E. Hickie, Tatiana Lee, Christina MacFarquhar, E. Christien Parsons, Kimberly N. Riehl, Naomi A. Rose, Elisabeth Slooten, Chia-Yang Tsai, John Y. Wang, Andrew J. Wright, and Shih Chu Yang. 2011. Ten guiding principles for the delineation of priority habitat for endangered small cetaceans. Marine Policy 35(4):483-488.       Zwolinski, Juan P., Robert L. Emmett, and David A. Demer. 2011. Predicting habitat to optimize sampling of Pacific sardine (Sardinops sagax). ICES Journal of Marine Science 68(5):867-879.      
2012
  Jones, C.D., and T.J. Near. 2012. The reproductive behaviour of Pogonophryne scotti confirms widespread egg-guarding parental care among Antarctic notothenioids. Journal of Fish Biology 80(7):2629-2635.      
2011
  Benson, Scott R., Tomoharu Eguchi, Dave G. Foley, Karin A. Forney, Helen Bailey, Creusa Hitipeuw, Betuel P. Samber, Ricardo F. Tapilatu, Vagi Rei, Peter Ramohia, John Pita, and Peter H. Dutton. 2011. Large-scale movements and high-use areas of western Pacific leatherback turtles, Dermochelys coriacea. Ecosphere 2(7):art84 (17 p.).       Fielding, Sophie, Jonathan Watkins, and ASAM participants. 2011. The ASAM 2010 assessment of krill biomass for area 48 from the Scotia Sea CCAMLR 2000 synoptic survey. CCAMLR Working Group on Ecosystem Monitoring and Management (Busan, Republic of Korea, 11-22 July 2011), Document no. WG-EMM-11/20.       Hinke, J.T., and G.M. Watters. 2011. Comparing CEMP indices to inform feedback management of the Antarctic krill fishery. CCAMLR Working Group on Ecosystem Monitoring and Management (Busan, Republic of Korea, 11-22 July 2011), Document no. WG-EMM-11/25.       Kinzey, D. 2011. Research standards for exploratory fisheries. CCAMLR Working Group on Statistics, Assessments and Modelling (Busan, Republic of Korea, 11-15 July 2011), Document no. WG-SAM-11/15 (Rev. 1).       Kinzey, Doug, George Watters, and Christian Reiss. 2011. Modeling Antarctic krill: scale, movement and age-structure. CCAMLR Working Group on Ecosystem Monitoring and Management (Busan, Republic of Korea, 11-22 July 2011), Document no. WG-EMM-11/43 (Rev. 1).     View Document Lam, Chi Hin, and Vardis M. Tsontos. 2011. Integrated management and visualization of electronic tag data with Tagbase. PLoS ONE 6(7): e21810 (10 p.).     View Document Nevins, Hannahrose M., Scott R. Benson, Elizabeth M. Phillips, Jean de Marignac, Andrew P. DeVogelaere, Jack A. Ames, and James T. Harvey. 2011. Coastal Ocean Mammal and Bird Education and Research Surveys (BeachCOMBERS), 1997-2007: Ten years of monitoring beached marine birds and mammals in the Monterey Bay National Marine Sanctuary. U.S. Department of Commerce, NOAA National Ocean Service, Office of National Marine Sanctuaries, Silver Spring, Maryland. 63 p.       Santora, Jarrod A., and Christian S. Reiss. 2011. Geospatial variability of krill and top predators within an Antarctic submarine canyon system. Marine Biology 158(11):2527-2540.       Sharp, B.R., and G.M. Watters. 2011. Marine Protected Area planning by New Zealand and the United States in the Ross Sea region. CCAMLR Workshop on Marine Protected Areas (Brest, France, 29 August - 2 September 2011), Document no. WS-MPA-11/25.     View Document Yoklavich, Mary, and Lisa Wedding. 2011. Relating population abundance of groundfish species to habitats using predictive models and broad-scale seafloor maps: annual report FY11. Habitat Assessment funded research: progress report to the NMFS Office of Science and Technology. NOAA National Marine Fisheries Service, Santa Cruz, California. 3 p.      
2012
  Komoroske, Lisa M., Rebecca L. Lewison, Jeffrey A. Seminoff, Douglas D. Deustchman, and Dimitri D. Deheyn. 2012. Trace metals in an urbanized estuarine sea turtle food web in San Diego Bay, CA. Science of the Total Environment 417-418:108-116.      
2011
  Carretta, James V., Susan J. Chivers, and Wayne L. Perryman. 2011. Abundance of the long-beaked common dolphin (Delphinus capensis) in California and western Baja California waters estimated from a 2009 ship-based line-transect survey. Bulletin of the Southern California Academy of Sciences 110(3):152-164.       Ruiz-Cooley, R.I., K.Y. Garcia, and E.D. Hetherington. 2011. Effects of lipid removal and preservatives on carbon and nitrogen stable isotope ratios of squid tissues: Implications for ecological studies. Journal of Experimental Marine Biology and Ecology 407(1):101-107.      
2012
  Cooke, Justin, Russell Leaper, Paul Wade, David Lavigne, and Barbara Taylor. 2012. Management rules for marine mammal populations: A response to Lonergan. Marine Policy 36(2):389-392.      
2011
  Dalzell, Paul, Peter H. Dutton, Kitty M. Simonds, and Dale Squires. 2011. Introduction to the conservation of Pacific sea turtles. In: Peter H. Dutton, Dale Squires, and Mahfuzuddin Ahmed (eds.), Conservation of Pacific sea turtles, p. 1-11. University of Hawaii Press.       Dutton, Peter H., and Dale Squires. 2011. A holistic strategy for Pacific sea turtle conservation. In: Peter H. Dutton, Dale Squires, and Mahfuzuddin Ahmed (eds.), Conservation of Pacific sea turtles, p. 37-59. University of Hawaii Press.       Dutton, Peter H., Dale Squires, and Mahfuzuddin Ahmed (eds.). 2011. Conservation of Pacific sea turtles. University of Hawaii Press. 481 p.     View Document Lang, A.R., D.W. Weller, R. LeDuc, A.M. Burdin, V.L. Pease, D. Litovka, V. Burkanov, and R.L. Brownell Jr. 2011. Genetic analysis of stock structure and movements of gray whales in the eastern and western North Pacific. Paper SC/63/BRG10 presented to the International Whaling Commission, Scientific Committee (SC63 meeting, Tromso, Norway 2011). 20 p.     View Document Moore, Jeffrey E., and Richard Merrick (eds.). 2011. Guidelines for assessing marine mammal stocks: Report of the GAMMS III Workshop (February 15-18, 2011, La Jolla, California). U.S. Department of Commerce, NOAA Technical Memorandum NMFS-OPR-47 (95 p.).       Tiwari, Manjula, Donna L. Dutton, and Jeanne A. Garner. 2011. Nest relocation: A necessary management tool for Western Pacific leatherback nesting beaches. In: Peter H. Dutton, Dale Squires, and Mahfuzuddin Ahmed (eds.), Conservation of Pacific sea turtles, p. 87-96. University of Hawaii Press.     View Document Williams, Thomas H., Steven T. Lindley, Brian C. Spence, and David A. Boughton. 2011. Status review update for Pacific salmon and steelhead listed under the Endangered Species Act: Southwest. Report to the NMFS Southwest and Northwest Regions, May 20, 2011. NOAA National Marine Fisheries Service, Southwest Fisheries Science Center, Santa Cruz, California. 98 p.       Wilson, Cara. 2011. The rocky road from research to operations for satellite ocean-colour data in fishery management. ICES Journal of Marine Science 68(4):677-686.       Wilson, Cara. 2011. Chlorophyll anomalies along the critical latitude at 30°N in the NE Pacific. Geophysical Research Letter 38:L15603, 6 p.       Wingfield, Dana K., S. Hoyt Peckham, David G. Foley, Daniel M. Palacios, Bertha E. Lavaniegos, Reginaldo Durazo, Wallace J. Nichols, Donald A. Croll, and Steven J. Bograd. 2011. The making of a productivity hotspot in the coastal ocean. PLoS ONE 6(11): e27874 (6 p.).     View Document Yoklavich, Mary, Tom Laidig, Diana Watters, Lisa Krigsman, Andrew Taylor, Milton Love, John Kloske, and Steve Untiedt. 2011. Understanding the capabilities of new technologies and methods to survey West Coast groundfishes: a visual survey using Dual Deepworker submersible. Quicklook cruise report (21-30 September 2011). NOAA National Marine Fisheries Service, SWFSC Fisheries Ecology Division, Santa Cruz, California. 4 p.     View Document Yoklavich, Mary, Tom Laidig, Lisa Krigsman, Andrew Taylor, Diana Watters, Milton Love, Lonny Lundsten, and Ben Negrete. 2011. A characterization of the coral and sponge community on Piggy Bank seamount in southern California from a survey using a remotely operated vehicle. Report to the NOAA Deep-Sea Coral Research and Technology Program. 63 p.      
2012
View Document Weller, David W., and Robert L. Brownell Jr. 2012. A re-evaluation of gray whale records in the western North Pacific. Paper SC/64/BRG10 presented to the International Whaling Commission, Scientific Committee (SC64 meeting, Panama City, Panama, 2012). 4 p.      
2011
  Vilstrup, Julia T., Simon Y.W. Ho, Andrew D. Foote, Phillip A. Morin, Danielle Kreb, Michael Krutzen, Guido J. Parra, Kelly M. Robertson, Renaud de Stephanis, Philippe Verborgh, Eske Willerslev, Ludovic Orlando, and M. Thomas P. Gilbert. 2011. Mitogenomic phylogenetic analyses of the Delphinidae with an emphasis on the Globicephalinae. BMC Evolutionary Biology 11:65 (10 p.).       Wade, Paul R., Amy Kennedy, Rick LeDuc, Jay Barlow, Jim Carretta, Kim Shelden, Wayne Perryman, Robert Pitman, Kelly Robertson, Brenda Rone, Juan Carlos Salinas, Alexandre Zerbini, Robert L. Brownell Jr., and Phillip J. Clapham. 2011. The world's smallest whale population? Biology Letters 7(1):83-85.      
2012
  Seminoff, Jeffrey A., and Bryan P. Wallace (eds.). 2012. Sea turtles of the eastern Pacific: advances in research and conservation. University of Arizona Press. 376 p.      
2011
  Villareal, Tracy A., Lori Adornato, Cara Wilson, and Caimee A. Schoenbaechler. 2011. Summer blooms of diatom-diazotroph assemblages and surface chlorophyll in the North Pacific gyre: a disconnect. Journal of Geophysical Research 116:C03001, 15 p.      
2012
  Ashford, J., M. Dinniman, C. Brooks, A. Andrews, E. Hofmann, G. Cailliet, C. Jones, and N. Ramanna. 2012. Does large-scale ocean circulation structure life history connectivity in Antarctic toothfish (Dissostichus mawsoni)? CCAMLR Working Group on Fish Stock Assessment (Hobart, Australia, 8-19 October 2012), Document no. WG-FSA-12/P02.       Burrows, Julia A., James T. Harvey, Kelly M. Newton, Donald A. Croll, and Scott R. Benson. 2012. Marine Mammal response to interannual variability in Monterey Bay, California. Marine Ecology Progress Series 461:257-271.       Butler, John L., Milton S. Love, and Tom E. Laidig. 2012. A guide to the rockfishes, thornyheads, and scorpionfishes of the northeast Pacific. University of California Press. 185 p.       Cossio, A.M., G.W. Watters. C.S. Reiss, J. Hinke, and D. Kinzey. 2012. Semi-empirical acoustic estimates of krill biomass derived from simulated commercial fishery data based on single-frequency acoustics. CCAMLR Subgroup on Acoustic Survey and Analysis Methods (Bergen, Norway, 17 -20 April 2012), Document no. SG-ASAM-12/04.       Detrich, H. William III, Bradley A. Buckley, Daniel F. Doolittle, Christopher D. Jones, and Susanne J. Lockhart. 2012. Sub-Antarctic and high Antarctic Notothenioid fishes: ecology and adaptational biology revealed by the ICEFISH 2004 cruise of RVIB Nathaniel B. Palmer. Oceanography 25(3):184-187.       Fortune, Sarah M.E., Andrew W. Trites, Wayne L. Perryman, Michael J. Moore, Heather M. Pettis, and Morgan S. Lynn. 2012. Growth and rapid early development of North Atlantic right whales (Eubalaena glacialis). Journal of Mammalogy 93(5):1342-1354.       Hinke, J., G. Watters, W. Trivelpiece, and M. Goebel. 2012. Synopsis of data from satellite telemetry of foraging trips and migration routes of penguins and pinnipeds from the South Shetland Islands, 1997/98 to present. CCAMLR Working Group on Ecosystem Monitoring and Management (Santa Cruz de Tenerife, Spain, 2-13 July 2012), Document no. WG-EMM-12/37.       Jehl, Joseph R. Jr., Annette E. Henry, and Judy St. Leger. 2012. Waterbird mortality in hypersaline environments: the Wyoming trona ponds. Hydrobiologia 697(1):23-29.       Kinzey, D., G. Watters, and C. Reiss. 2012. An integrated assessment model for Antarctic krill: progress update. CCAMLR Working Group on Ecosystem Monitoring and Management (Santa Cruz de Tenerife, Spain, 2-13 July 2012), Document no. WG-EMM-12/27.       Kock, K.-H., and C.D. Jones. 2012. The composition, abundance and reproductive characteristics of the demersal fish fauna in the Elephant Island - South Shetland Islands region and at the tip of the Antarctic Peninsula (CCAMLR Subarea 8.1) in March-early April 2012. CCAMLR Working Group on Fish Stock Assessment (Hobart, Australia, 8-19 October 2012), Document no. WG-FSA-12/10.       Kock, K.-H., and C.D. Jones. 2012. Has Notothenia rossii around Elephant Islands and the lower South Shetland Islands (Subarea 48.1) recovered from exploitation? CCAMLR Working Group on Fish Stock Assessment (Hobart, Australia, 8-19 October 2012), Document no. WG-FSA-12/???.       Lanci, Amy K.J., Suzanne E. Roden, Amanda Bowman, Erin L. LaCasella, Amy Frey, and Peter H. Dutton. 2012. Evaluating buccal and cloacal swabs for ease of collection and use in genetic analyses of marine turtles. Chelonian Conservation and Biology 11(1):144-148.       Lockhart, S.J., N. Wilson, and E. Lazo-Wasem. 2012. Potential VMEs around Elephant and the South Shetland Islands (Subarea 48.1). CCAMLR Working Group on Ecosystem Monitoring and Management (Santa Cruz de Tenerife, Spain, 2-13 July 2012), Document no. WG-EMM-12/51.     View Document Seminoff, Jeffrey A., Scott R. Benson, Karen E. Arthur, Tomoharu Eguchi, Peter H. Dutton, Ricardo F. Tapilatu, and Brian N. Popp. 2012. Stable isotope tracking of endangered sea turtles: validation with satellite telemetry and d15N analysis of amino acids. PLoS ONE 7(5): e37403 (11 p.).       Shillinger, George L., Elliott L. Hazen, Helen Bailey, Steven J. Bograd, Brendan J. Godley, Rory P. Wilson, Philippe Gaspar, Mark Hamann, and James R. Spotila (eds.). 2012. Tagging through the stages: ontogeny in biologging [Theme section]. Marine Ecology Progress Series 457:163-301.       Watters, G., and J. Hinke. 2012. Towards developing a feedback management procedure for the Antarctic krill fishery. CCAMLR Working Group on Ecosystem Monitoring and Management (Santa Cruz de Tenerife, Spain, 2-13 July 2012), Document no. WG-EMM-12/44.       Watters, G.M., and C.S. Reiss. 2012. Research and monitoring to support an MPA in the Ross Sea Region. CCAMLR Working Group on Ecosystem Monitoring and Management (Santa Cruz de Tenerife, Spain, 2-13 July 2012), Document no. WG-EMM-12/46.       Weller, David W., Amber Klimek, Amanda L. Bradford, John Calambokidis, Aimee R. Lang, Brian Gisborne, Alexander M. Burdin, Wendy Szaniszlo, Jorge Urban, Alejandro Gomez-Gallardo Unzueta, Steven Swartz, and Robert L. Brownell Jr. 2012. Movements of gray whales between the western and eastern North Pacific. Endangered Species Research 18(3):193-199.      
2011
  Van Cise, Amy M., and Michael E. Goebel. 2011. Annual weather report: Cape Shirreff, South Shetland Islands, Antarctica. In: Amy Van Cise (ed.), AMLR 2009/2010 field season report: objectives, accomplishments and tentative conclusions, p. 42-45. U.S. Department of Commerce, NOAA Technical Memorandum NMFS-SWFSC-470.      
2012
  Hurst, Thomas P., Stephan B. Munch, and Kate A. Lavelle. 2012. Thermal reaction norms for growth vary among cohorts of Pacific cod (Gadus macrocephalus). Marine Biology 159(10):2173-2183.       Ruegg, K., E.C. Anderson, and H. Slabbekoorn. 2012. Differences in timing of migration and response to sexual signalling drive asymmetric hybridization across a migratory divide. Journal of Evolutionary Biology 25(9):1741-1750.     View Document Salinas, Santiago, Kestrel O. Perez, Tara A. Duffy, Stephen J. Sabatino, Lyndie A. Hice, Stephan B. Munch, and David O. Conover. 2012. The response of correlated traits following cessation of fishery-induced selection. Evolutionary Applications 5(7):657-663.       Santora, Jarrod A., John C. Field, Isaac D. Schroeder, Keith M. Sakuma, Brian K. Wells, and William J. Sydeman. 2012. Spatial ecology of krill, micronekton and top predators in the central California Current: Implications for defining ecologically important areas. Progress in Oceanography 106:154-174.       Sugihara, George, Robert May, Hao Ye, Chih-hao Hsieh, Ethan Deyle, Michael Fogarty, and Stephan Munch. 2012. Detecting causality in complex ecosystems. Science 338(6106):496-500.      
2011
View Document Tyack, Peter L., Walter M.X. Zimmer, David Moretti, Brandon L. Southall, Diane E. Claridge, John W. Durban, Christopher W. Clark, Angela D'Amico, Nancy DiMarzio, Susan Jarvis, Elena McCarthy, Ronald Morrissey, Jessica Ward, and Ian L. Boyd. 2011. Beaked whales respond to simulated and actual navy sonar. PLoS ONE 6(3):e17009. 15 p.      
2012
  Anderson, Eric C. 2012. Large-scale parentage inference with SNPs: an efficient algorithm for statistical confidence of parent pair allocations. Statistical Applications in Genetics and Molecular Biology 11(5):article 12 (26 p.).      
2011
View Document Trivelpiece, Wayne Z., Jefferson T. Hinke, Aileen K. Miller, Christian S. Reiss, Susan G. Trivelpiece, and George M. Watters. 2011. Variability in krill biomass links harvesting and climate warming to penguin population changes in Antarctica. Proceedings of the National Academy of Sciences of the United States of America 108(18):7625-7628.      
2012
View Document Bjorkstedt, Eric P., Ralf Goericke, Sam McClatchie, Ed Weber, William Watson, Nancy Lo, William T. Peterson, Richard D. Brodeur, Toby Auth, Jennifer Fisher, Cheryl Morgan, Jay Peterson, John Largier, Steven J. Bograd, Reginaldo Durazo, Gilberto Gaxiola-Castro, Bertha Lavaniegos, Francisco P. Chavez, Curtis A. Collins, Bob Hannah, John Field, Keith Sakuma, Will Satterthwaite, Michael O'Farrell, Sean Hayes, Jeff Harding, William J. Sydeman, Sarah Ann Thompson, Pete Warzybok, Russell Bradley, Jaime Jahncke, Richard T. Golightly, Stephanie R. Schneider, Robert M. Suryan, Amanda J. Gladics, Cheryl A. Horton, Sung Yong Kim, Sharon R. Melin, Robert L. DeLong, and Jeffrey Abell. 2012. State of the California Current 2011-2012: Ecosystems respond to local forcing as La Nina wavers and wanes. CalCOFI Reports 53:41-76.      
2011
  Buonaccorsi, Vincent P., Ashton Bunce, Carol Kimbrell, Eric Lynn, and John Hyde. 2011. Development of metabolic-process EST-SSR PCR primers within the bocaccio rockfish Sebastes paucispinis. Conservation Genetics Resources 3(3):475-477.       Fullerton, Aimee H., Steven T. Lindley, George R. Pess, Blake E. Feist, E. Ashley Steel, and Paul McElhany. 2011. Human influence on the spatial structure of threatened Pacific salmon metapopulations. Conservation Biology 25(5):932-944.       Gerrodette, Tim. 2011. Inference without significance: measuring support for hypotheses rather than rejecting them. Marine Ecology 32(3):404-418.       Gerrodette, Tim, and Lorenzo Rojas-Bracho. 2011. Estimating the success of protected areas for the vaquita, Phocoena sinus. Marine Mammal Science 27(2):E101-E125.     View Document Gerrodette, Tim, and Tomoharu Eguchi. 2011. Precautionary design of a marine protected area based on a habitat model. Endangered Species Research 15(2):159-166.       Gerrodette, Tim, Barbara L. Taylor, Rene Swift, Shannon Rankin, Armando M. Jaramillo-Legorreta, and Lorenzo Rojas-Bracho. 2011. A combined visual and acoustic estimate of 2008 abundance, and change in abundance since 1997, for the vaquita, Phocoena sinus. Marine Mammal Science 27(2):E79-E100.       Glaser, Sarah M., Hao Ye, Mark Maunder, Alec MacCall, Michael Fogarty, and George Sugihara. 2011. Detecting and forecasting complex nonlinear dynamics in spatially structured catch-per-unit-effort time series for North Pacific albacore (Thunnus alalunga). Canadian Journal of Fisheries and Aquatic Sciences 68(3):400–412.       Goebel, Michael E., Ryan Burner, Ray Buchheit, Nicola Pussini, Douglas Krause, Carolina Bonin, Raul Vasquez del Mercado, and Amy Van Cise. 2011. Pinniped research at Cape Shirreff, Livingston Island, Antarctica. In: Amy Van Cise (ed.), AMLR 2009/2010 field season report: objectives, accomplishments and tentative conclusions, p. 28-35. U.S. Department of Commerce, NOAA Technical Memorandum NMFS-SWFSC-470.     View Document Harding, Jeffrey A., Arnold J. Ammann, and R. Bruce MacFarlane. 2011. Regional and seasonal patterns of epipelagic fish assemblages from the central California Current. Fishery Bulletin 109(3):261-281.       Harvey, Chris J., John C. Field, Sabrina G. Beyer, and Susan M. Sogard. 2011. Modeling growth and reproduction of chilipepper rockfish under variable environmental conditions. Fisheries Research 109(1):187-200.       Hayes, Sean A., Morgan H. Bond, Chad V. Hanson, Andrew W. Jones, Arnold J. Ammann, Jeffrey A. Harding, Alison L. Collins, Jeffrey Perez, and R. Bruce MacFarlane. 2011. Down, up, down and "smolting" twice? Seasonal movement patterns by juvenile steelhead (Oncorhynchus mykiss) in coastal watershed with bar closing estuary. Canadian Journal of Fisheries and Aquatic Sciences 68(8):1341-1350.     View Document Hazen, Elliott L., William J. Sydeman, Isaac D. Schroeder, Sarah A. Thompson, Brian K. Wells, Steven T. Lindley, Churchill B. Grimes, Steven J. Bograd, and Franklin B. Schwing. 2011. Status of the California Current Ecosystem: major EBM drivers and pressures. In: Levin, Phillip S., and Franklin B. Schwing (eds.), Technical background for an Integrated Ecosystem Assessment of the California Current: groundfish, salmon, green sturgeon, and ecosystem health, p. 99-110. U.S. Department of Commerce, NOAA Technical Memorandum NMFS-NWFSC-109.     View Document He, Xi, Donald E. Pearson, E.J. Dick, John C. Field, Stephen Ralston, and Alec D. MacCall. 2011. Status of the widow rockfish resource in 2011. Report to the Pacific Fishery Management Council, Portland, Oregon. 317 p.     View Document He, Xi, Stephen Ralston, and Alec D. MacCall. 2011. Interactions of age-dependent mortality and selectivity functions in age-based stock assessment models. Fishery Bulletin 109(2)198-216.     View Document Hendrix, N., S. Lindley, J. Hamilton, J. Simondet, and C. Huntington. 2011. Conceptual design and approach for modeling fall-run Chinook production post dam removal [abstract]. In: Lyman Thorsteinson, Scott VanderKooi, and Walter Duffy (eds.), Proceedings of the Klamath Basin Science Conference (Medford, Oregon, February 1-5, 2010), p. 217-218. U.S. Geological Survey, Open File Report 2011-1196.       Hess, Jon E., Russell D. Vetter, and Paul Moran. 2011. A steep genetic cline in yellowtail rockfish, Sebastes flavidus, suggests regional isolation across the Cape Mendocino faunal break. Canadian Journal of Fisheries and Aquatic Sciences 68(1):89-104.       Hinke, Jefferson T., and Wayne Z. Trivelpiece. 2011. Daily activity and minimum food requirements during winter for gentoo penguins (Pygoscelis papua) in the South Shetland Islands, Antarctica. Polar Biology 34(10):1579-1590.     View Document Huff, David D., Steven T. Lindley, Polly S. Rankin, and Ethan A. Mora. 2011. Green sturgeon physical habitat use in the coastal Pacific Ocean. PLoS ONE 6(9):e25156. 12 p.     View Document Javor, Barbara, Nancy Lo, and Russ Vetter. 2011. Otolith morphometrics and population structure of Pacific sardine (Sardinops sagax) along the west coast of North America. Fisheries Bulletin (U.S.) 109(4):402-415.       Jeremy Kiszka, William F. Perrin, Claire Pusineri, and Vincent Ridoux. 2011. What drives island-associated tropical dolphins to form mixed-species associations in the southwest Indian Ocean? Journal of Mammalogy 92(5):1105-1111.       Karplus, Ilan, and Andrew Richard Thompson. 2011. The partnership between gobiid fishes and burrowing alpheid shrimps. In: Robert Patzner et al. (eds.), The biology of gobies, p. 559-607. Science Publishers / CRC Press.     View Document Kaschner, Kristin, Derek P. Tittensor, Jonathan Ready, Tim Gerrodette, and Boris Worm. 2011. Current and future patterns of global marine mammal biodiversity. PLoS ONE 6(5): e19653 (13 p.).     View Document Kinziger, Andrew P., Rodney J. Nakamoto, Eric C. Anderson, and Bret C. Harvey. 2011. Small founding number and low genetic diversity in an introduced species exhibiting limited invasion success (speckled dace, Rhinichthys osculus). Ecology and Evolution 1(1):73-84.     View Document Klamath River Technical Team. 2011. Klamath River fall Chinook salmon age-specific escapement, river harvest, and run size estimates, 2010 run. Klamath River Technical Team. 21 p.     View Document Klamath River Technical Team. 2011. Ocean abundance projections and prospective harvest levels for Klamath River fall Chinook, 2011 season. Klamath River Technical Team. 37 p.       Koslow, J. Anthony, Ralf Goericke, Ana Lara-Lopez, and William Watson. 2011. Impact of declining intermediate-water oxygen on deepwater fishes in the California Current. Marine Ecology Progress Series 436:207-218.       Kreb, Danielle, William F. Perrin, Pieter't Hart, Harun Guclusoy, and Koen Van Waerebeek. 2011. Peter Johannes Hendrikus van Bree, 1927-2011. Marine Mammal Science 27(3): 665–670.     View Document Levin, Phillip S., and Franklin B. Schwing. 2011. Introduction: An incremental approach to the California Current Integrated Ecosystem Assessment. In: Levin, Phillip S., and Franklin B. Schwing (eds.), Technical background for an Integrated Ecosystem Assessment of the California Current: groundfish, salmon, green sturgeon, and ecosystem health, p. 1-6. U.S. Department of Commerce, NOAA Technical Memorandum NMFS-NWFSC-109.     View Document Levin, Phillip S., and Franklin B. Schwing (eds.). 2011. Technical background for an Integrated Ecosystem Assessment of the California Current: groundfish, salmon, green sturgeon, and ecosystem health. U.S. Department of Commerce, NOAA Technical Memorandum NMFS-NWFSC-109 (330 p.).       Lewallen, Eric A., Robert L. Pitman, Shawna L. Kjartanson, and Nathan R. Lovejoy. 2011. Molecular systematics of flyingfishes (Teleostei: Exocoetidae): evolution in the epipelagic zone. Biological Journal of the Linnean Society 102(1):161-174.       Liles, Michael J., Mauricio V. Jandres, Wilfredo A. Lopez, Georgina I. Mariona, Carlos R. Hasbun, and Jeffrey A. Seminoff. 2011. Hawksbill turtles Eretmochelys imbricata in El Salvador: nesting distribution and mortality at the largest remaining nesting aggregation in the eastern Pacific Ocean. Endangered Species Research 14(1):23-30.       Lindley, Steven T., Daniel L. Erickson, Mary L. Moser, Greg Williams, Olaf P. Langness, Barry W. McCovey Jr., Michael Belchik, Dave Vogel, William Pinnix, John T. Kelly, Joseph C. Heublein, and A. Peter Klimley. 2011. Electronic tagging of green sturgeon reveals population structure and movement among estuaries. Transactions of the American Fisheries Society 140(1):108-122.       MacCall, Alec D. 2011. The sardine-anchovy puzzle. In: Jeremy B.C. Jackson, Karen E. Alexander, and Enric Sala (eds.), Shifting baselines: the past and future of ocean fisheries, p. 47-57. Island Press.       MacCall, Alec D. 2011. Foreword. In: A. Belgrano and C.W. Fowler (eds.), Ecosystem-based management for marine fisheries: an evolving perspective, p. xiii-xvi. Cambridge University Press.     View Document MacCall, Alec D., and Steven L.H. Teo. 2011. Exploration of a hybrid stock synthesis-VPA model of Pacific bluefin tuna to distinguish between trends in recruitment and changes in fishing intensity on young fish. Working document submitted to the ISC Pacific bluefin tuna Working Group, International Scientific Committee for Tuna and Tuna-Like Species in the North Pacific Ocean (ISC), 6-13 January 2011, Shimizu-ku, Shizuoka, Japan. ISC document no. ISC/11-1/PBFWG/01. 12 p.     View Document MacCall, Alec, Brad Erisman, Ashley Apel, and Rod Fujita. 2011. Data-poor models for assessing gulf curvina and evaluating management alternatives. Report supporting a presentation at Ensenada, BCN, on 11 May, 2011. 10 p.       Martinez, Andres, John Carlos Garza, and Devon E. Pearse. 2011. A microsatellite genome screen identifies chromosomal regions under differential selection in steelhead and rainbow trout. Transactions of the American Fisheries Society 140(3):829-842.     View Document Mazzillo, Fernanda F.M., John C. Field, Danna J. Staaf, Melissa L. Carter, and Mark D. Ohman. 2011. A note on the detection of the neurotoxin domoic acid in beach-stranded Dosidicus gigas in the Southern California Bight. CalCOFI Reports 52:109-115.       McGilliard, Carey R., Ray Hilborn, Alec MacCall, Andre E. Punt, and John C. Field. 2011. Can information from marine protected areas be used to inform control-rule-based management of small-scale, data-poor stocks? ICES Journal of Marine Science 68(1):201-211.       Mesnick, Sarah L., Barbara L. Taylor, Frederick I. Archer, Karen K. Martien, Sergio Escorza Trevino, Brittany L. Hancock-Hanser, Sandra Carolina Moreno Medina, Victoria L. Pease, Kelly M. Robertson, Janice M. Straley, Robin W. Baird, John Calambokidis, Gregory S. Schorr, Paul Wade, Vladimir Burkanov, Chris R. Lunsford, Luke Rendell, and Phillip A. Morin. 2011. Sperm whale population structure in the eastern and central North Pacific inferred by the use of single-nucleotide polymorphisms, microsatellites and mitrochondrial DNA. Molecular Ecology Resources 11(suppl.1):278-298.       Moore, Jonathan W., Sean A. Hayes, Walter Duffy, Sean Gallagher, Cyril J. Michel, and David Wright. 2011. Nutrient fluxes and the recent collapse of coastal California salmon populations. Canadian Journal of Fisheries and Aquatic Sciences 68(7):1161-1170.       Needham, Derek, Andre du Randt, Andre Hoek, and Mike Soule. 2011. Physical oceanography and underway environmental observations. In: Amy Van Cise (ed.), AMLR 2009/2010 field season report: objectives, accomplishments and tentative conclusions, p. 1-7. U.S. Department of Commerce, NOAA Technical Memorandum NMFS-SWFSC-470.       Noren, S.R., and E.F. Edwards. 2011. Infant position in mother-calf dolphin pairs: formation locomotion with hydrodynamic benefits. Marine Ecology Progress Series 424:229-236.       Noren, Shawn R., Jessica V. Redfern, and Elizabeth F. Edwards. 2011. Pregnancy is a drag: hydrodynamics, kinematics and performance in pre- and post-parturition bottlenose dolphins (Tursiops truncatus). Journal of Experimental Biology 214(24):4151-4159.     View Document Pacific Fishery Management Council (Ad Hoc Salmon Amendment Committee). 2011. Final environmental assessment and initial regulatory impact review for Pacific Coast Salmon Plan Amendment 16: Classifying stocks, revising status determination criteria, establishing annual catch limits and accountability measures, and de minimis fishing provisions. Regulatory Identifier Number 0648-BA55. Pacific Fishery Management Council, Portland, Oregon. 491 p.     View Document Pacific Fishery Management Council (Salmon Technical Team). 2011. Preseason report I: Stock abundance analysis and environmental assessment Part 1 for 2011 ocean salmon fishery regulations. Pacific Fishery Management Council, Portland, Oregon. 123 p.     View Document Pacific Fishery Management Council (Salmon Technical Team). 2011. Preseason report II: Proposed alternatives and environmental assessment Part 2 for ocean salmon fishery regulations. Pacific Fishery Management Council, Portland, Oregon. 58 p.     View Document Pacific Fishery Management Council (Salmon Technical Team). 2011. Review of 2010 ocean salmon fisheries. Pacific Fishery Management Council, Portland, Oregon. 335 p.     View Document Pacific Fishery Management Council (Salmon Technical Team). 2011. Preseason report III: Analysis of Council adopted management measures for 2011 ocean salmon fisheries. Pacific Fishery Management Council, Portland, Oregon. 37 p.       Paliza, Obla, Anelio Aguayo L., Koen Van Waerebeek, John Bannister, Peter Best, and William F. Perrin. 2011. Dr. Robert Henry Clarke, 1919-2011. Marine Mammal Science 27(4):899-903.     View Document Pearse, D., J.C. Garza, and M. Peterson. 2011. Population genetics of Klamath Basin Oncorhynchus mykiss [abstract]. In: Lyman Thorsteinson, Scott VanderKooi, and Walter Duffy (eds.), Proceedings of the Klamath Basin Science Conference (Medford, Oregon, February 1-5, 2010), p. 227. U.S. Geological Survey, Open File Report 2011-1196.       Pearse, Devon E., Edith Martinez, and John Carlos Garza. 2011. Disruption of historical patterns of isolation by distance in coastal steelhead. Conservation Genetics 12(3):691-700.       Pearse, Devon E., Stephanie L. Gunckel, and Steven E. Jacobs. 2011. Population structure and genetic divergence of coastal rainbow and redband trout in the upper Klamath basin. Transactions of the American Fisheries Society 140(3):587-597.       Perrin, William F., Janet L. Thieleking, William A. Walker, Frederick I. Archer, and Kelly M. Robertson. 2011. Common bottlenose dolphins (Tursiops truncatus) in California waters: Cranial differentiation of coastal and offshore ecotypes. Marine Mammal Science 27(4): 769–792.     View Document Peterman, R.M., P.B. Adams, B. Dorner, D.L. Drake, H.J. Geiger, K. Holt, C. Jordan, D.P. Larsen, S.A. Leider, R.H. Lincoln, A.R. Olsen, C.K. Parken, J.D. Rodgers, and S. Walbridge. 2011. The Salmon Monitoring Advisor: a hierarchical web site to help design and implement salmon monitoring programs [abstract]. In: Lyman Thorsteinson, Scott VanderKooi, and Walter Duffy (eds.), Proceedings of the Klamath Basin Science Conference (Medford, Oregon, February 1-5, 2010), p. 271. U.S. Geological Survey, Open File Report 2011-1196.       Pietrzak, Kevin W., McKenzie L. Mudge, and Wayne Z. Trivelpiece. 2011. Seabird research at Cape Shirreff, Livingston Island, Antarctica. In: Amy Van Cise (ed.), AMLR 2009/2010 field season report: objectives, accomplishments and tentative conclusions, p. 24-27. U.S. Department of Commerce, NOAA Technical Memorandum NMFS-SWFSC-470.     View Document Pipal, K., M. Jessop, and P. Adams. 2011. Use of dual frequency identification sonar (DIDSON) to estimate low abundance salmonid escapement in California watersheds [abstract]. In: Lyman Thorsteinson, Scott VanderKooi, and Walter Duffy (eds.), Proceedings of the Klamath Basin Science Conference (Medford, Oregon, February 1-5, 2010), p. 270. U.S. Geological Survey, Open File Report 2011-1196.       Pitman, Robert L., John W. Durban, Michael Greenfelder, Christophe Guinet, Morton Jorgensen, Paula A. Olson, Jordi Plana, Paul Tixier, and Jared R. Towers. 2011. Observations of a distinctive morphotype of killer whale (Orcinus orca), type D, from subantarctic waters. Polar Biology 34(2):303-306.     View Document Ralston, Stephen, Andre E. Punt, Owen S. Hamel, John D. DeVore, and Ramon J. Conser. 2011. A meta-analytic approach to quantifying scientific uncertainty in stock assessments. Fishery Bulletin 109(2):217-231.       Rankin, Shannon, Simone Baumann-Pickering, Tina Yack, and Jay Barlow. 2011. Description of sounds recorded from Longman's beaked whale, Indopacetus pacificus. Journal of the Acoustical Society of America 130(5):EL339-EL344.       Reiss, Christian, Guido Bordignon, Tara Clemente, and Amy Can Cise. 2011. Phytoplankton studies in the South Shetland Islands. In: Amy Van Cise (ed.), AMLR 2009/2010 field season report: objectives, accomplishments and tentative conclusions, p. 8-11. U.S. Department of Commerce, NOAA Technical Memorandum NMFS-SWFSC-470.       Robel, Alexander A., M. Susan Lozier, Stefan F. Gary, George L. Shillinger, Helen Bailey, and Steven J. Bograd. 2011. Projecting uncertainty onto marine megafauna trajectories. Deep-Sea Research I 58(9):915-921.       Rosales-Nanduca, Hiram, Tim Gerrodette, Jorge Urban-R., Gustavo Cardenas-Hinojosa, and Luis Medrano-Gonzalez. 2011. Macroecology of marine mammal species in the Mexican Pacific Ocean: diversity and distribution. Marine Ecology Progress Series 431:281-291.       Santora, Jarrod A., Michael P. Force, and Amy M. Van Cise. 2011. Birds and mammals at sea during the 2009/10 AMLR Survey. In: Amy Van Cise (ed.), AMLR 2009/2010 field season report: objectives, accomplishments and tentative conclusions, p. 36-41. U.S. Department of Commerce, NOAA Technical Memorandum NMFS-SWFSC-470.       Santora, Jarrod A., Stephen Ralston, and William J. Sydeman. 2011. Spatial organization of krill and seabirds in the central California Current. ICES Journal of Marine Science 68(7):1391-1402.       Santora, Jarrod A., William J. Sydeman, Isaac D. Schroeder, Brian K. Wells, and John C. Field. 2011. Mesoscale structure and oceanographic determinants of krill hotspots in the California Current: Implications for trophic transfer and conservation. Progress in Oceanography 91(4):397-409.       Shillinger, George L., Alan M. Swithenbank, Helen Bailey, Steven J. Bograd, Michael R. Castelton, Bryan P. Wallace, James R. Spotila, Frank V. Paladino, Rotney Piedra, and Barbara A. Block. 2011. Vertical and horizontal habitat preferences of post-nesting leatherback turtles in the South Pacific Ocean. Marine Ecology Progress Series 422:275-289.     View Document Sippel, Tim, James Wraith, Suzy Kohin, Valerie Taylor, John Holdsworth, Mioko Taguchi, Hiroaki Matsunaga, and Kotaro Yokawa. 2011. A summary of blue shark (Prionace glauca) and shortfin mako shark (Isurus oxyrinchus) tagging data available from the North and Southwest Pacific Ocean. Working document submitted to the ISC Shark Working Group Workshop (28 November - 3 December 2011, NOAA Southwest Fisheries Science Center, La Jolla, California, U.S.A.). International Scientific Committee document ISC/11/SHARKWG-2/04. 7 p.     View Document Smith, Christian, Denise Hawkins, and John Carlos Garza. 2011. Summary of genetic data collected for rapid response Chinook salmon assignment, and evaluation of new markers and assignment tools: Report for FY 2010. Report submitted to the Coleman National Fish Hatchery, Anderson, California (updated August 10, 2011). 29 p.       Sogard, Susan M. 2011. Interannual variability in growth rates of early juvenile sablefish and the role of environmental factors. Bulletin of Marine Science 87(4):857-872.     View Document Sogard, Susan, John Field, Chris Harvey, and Sabrina Beyer. 2011. An evaluation of the significance of climate forcing on time-varying growth and fecundity of rockfish in the California Current (Final report). Report to NOAA Fisheries and the Environment (FATE) program, Project 09-09. NOAA National Marine Fisheries Service, Silver Spring, Maryland. 21 p.       Southwell, C., L. Emmerson, J. Forcada, M. Goebel, J. Hinke, H. Lynch, P. Lyver, J. McKinlay, N. Ratcliffe, D. Ramm, K. Reid, C. Reiss, W. Trivelpiece, S. Trivelpiece, and P. Trathan. 2011. Update on intersessional work by the Subgroup on Status and Trends Assessment of Predator Populations (WG-EMM-STAPP). CCAMLR Working Group on Ecosystem Monitoring and Management (Busan, Republic of Korea, 11-22 July 2011), Document no. WG-EMM-11/30.       Stewart, Kelly R., and Peter H. Dutton. 2011. Paternal genotype reconstruction reveals multiple paternity and sex ratios in a breeding population of leatherback turtles (Dermochelys coriacea). Conservation Genetics 12(4):1101-1113.       Stewart, Kelly R., Jennifer M. Keller, Ryan Templeton, John R. Kucklick, Chris Johnson. 2011. Monitoring persistent organic pollutants in leatherback turtles (Dermochelys coriacea) confirms maternal transfer. Marine Pollution Bulletin 62(7):1396-1409.     View Document Stierhoff, Kevin L., Peter J. Etnoyer, David W. Murfin, and John L. Butler. 2011. A survey of deep-water coral and sponge habitats along the West Coast of the US using a remotely operated vehicle. U.S. Department of Commerce, NOAA Technical Memorandum NOS NCCOS 138. NOAA Center for Coastal Environmental Health and Biomolecular Research, Charleston, South Carolina. 38 p.       Sugihara, George, John Beddington, Chih-hao Hsieh, Ethan Deyle, Michael Fogarty, Sarah M. Glaser, Roger Hewitt, Anne Hollowed, Robert M. May, Stephan B. Munch, Charles Perretti, Andrew A. Rosenberg, Stuart Sandin, and Hao Ye. 2011. Are exploited fish populations stable? Proceedings of the National Academy of Sciences of the United States of America 108(48):E1224-1225.       Sydeman, William J., Sarah Ann Thompson, John C. Field, William T. Peterson, Ronald W. Tanasichuk, Howard J. Freeland, Steven J. Bograd, and Ryan R. Rykaczewski. 2011. Does positioning of the North Pacific Current affect downstream ecosystem productivity? Geophysical Research Letters 38:L12606 (6 p.).       Taylor, Barbara L., Karen Martien, and Phillip Morin. 2011. Identifying units to conserve using genetic data. In: Ian L. Boyd, W. Don Bowen, and Sara J. Iverson (eds.), Marine mammal ecology and conservation: a handbook of techniques, p. 306-324. Oxford University Press.       Thacker, Christine E., Andrew R. Thompson, and Dawn M. Roje. 2011. Phylogeny and evolution of Indo-Pacific shrimp-associated gobies (Gobiiformes: Gobiidae). Molecular Phylogenetics and Evolution 59(1):168-176.       Thomas, Kimberley A., Barbara C. Bruno, Kate Achilles, and Sarah B. Sherman. 2011. A watery whodunit: The case of the missing zooxanthellae. Science Scope 34(7):44-54.     View Document Thomson, C. 2011. Monitoring fishery effects of salmonid habitat restoration [abstract]. In: Lyman Thorsteinson, Scott VanderKooi, and Walter Duffy (eds.), Proceedings of the Klamath Basin Science Conference (Medford, Oregon, February 1-5, 2010), p. 208-209. U.S. Geological Survey, Open File Report 2011-1196.     View Document Thomson, C. 2011. Evaluating economic effects on fisheries association with Klamath dam removal [abstract]. In: Lyman Thorsteinson, Scott VanderKooi, and Walter Duffy (eds.), Proceedings of the Klamath Basin Science Conference (Medford, Oregon, February 1-5, 2010), p. 218. U.S. Geological Survey, Open File Report 2011-1196.     View Document Thorsteinson, Lyman, Churchill Grimes, and Walter Duffy. 2011. An overview of the Klamath Basin Science Conference. In: Lyman Thorsteinson, Scott VanderKooi, and Walter Duffy (eds.), Proceedings of the Klamath Basin Science Conference (Medford, Oregon, February 1-5, 2010), p. 1-29. U.S. Geological Survey, Open File Report 2011-1196.     View Document Tolimieri, Nick, Gregory D. Williams, Kelly S. Andrews, Phillip S. Levin, Brian K. Wells, Steven J. Bograd, Churchill B. Grimes, Elliott L. Hazen, David Hugg, Steven T. Lindley, and Isaac D. Schroeder. 2011. Status of the California Current Ecosystem: major EBM components. In: Levin, Phillip S., and Franklin B. Schwing (eds.), Technical background for an Integrated Ecosystem Assessment of the California Current: groundfish, salmon, green sturgeon, and ecosystem health, p. 60-98. U.S. Department of Commerce, NOAA Technical Memorandum NMFS-NWFSC-109.     View Document Tolimieri, Nick, Gregory D. Williams, Kelly S. Andrews, Phillip S. Levin, Elliott L. Hazen, William J. Sydeman, Isaac D. Schroeder, Sarah A. Thompson, Brian K. Wells, Steven T. Lindley, Churchill B. Grimes, Steven J. Bograd, and Franklin B. Schwing. 2011. Appendix C: Data sources. In: Levin, Phillip S., and Franklin B. Schwing (eds.), Technical background for an Integrated Ecosystem Assessment of the California Current: groundfish, salmon, green sturgeon, and ecosystem health, p. 275-284. U.S. Department of Commerce, NOAA Technical Memorandum NMFS-NWFSC-109.       Trivelpiece, Susan G., Amy Lindsley, Alexis Will, Renee Koplan, Jefferson Hinke, and Wayne Z. Trivelpiece. 2011. Seabird research at Admiralty Bay, King George Island, Antarctica, 2009/10. In: Amy Van Cise (ed.), AMLR 2009/2010 field season report: objectives, accomplishments and tentative conclusions, p. 46-51. U.S. Department of Commerce, NOAA Technical Memorandum NMFS-SWFSC-470.      
2012
View Document Spence, Brian C., Eric P. Bjorkstedt, Sara Paddock, and Leora Nanus. 2012. Updates to biological viability criteria for threatened steelhead populations in the North-Central California Coast Recovery Domain. National Marine Fisheries Service, Southwest Fisheries Science Center, Fisheries Ecology Division, Santa Cruz, California. 15 p.      
2011
View Document Andrews, Kelly S., Gregory D. Williams, Isaac C. Kaplan, Nick Tolimieri, Jameal F. Samhouri, Phillip S. Levin, Brian K. Wells, Steven J. Bograd, Churchill B. Grimes, Elliot L. Hazen, David Huff, Steven T. Lindley, and Isaac D. Schoeder. 2011. Selecting and evaluating indicators for the California Current. In: Levin, Phillip S., and Franklin B. Schwing (eds.), Technical background for an Integrated Ecosystem Assessment of the California Current: groundfish, salmon, green sturgeon, and ecosystem health, p. 7-59. U.S. Department of Commerce, NOAA Technical Memorandum NMFS-NWFSC-109.       Babcock, Elizabeth A., and Alec D. MacCall. 2011. How useful is the ratio of fish density outside versus inside no-take marine reserves as a metric for fishery management control rules? Canadian Journal of Fisheries and Aquatic Sciences 68(2):343-359.       Barlow, Jay, John Calambokidis, Erin A. Falcone, C. Scott Baker, Alexander M. Burdin, Phillip J. Clapham, John K.B. Ford, and Christine M. Gabriele. 2011. Humpback whale abundance in the North Pacific estimated by photographic capture-recapture with bias correction from simulation studies. Marine Mammal Science 27(4):793-818.       Barnett, Lewis A.K., and Brian C. Spence. 2011. Freshwater survival of stranded steelhead kelts in coastal central California streams. North American Journal of Fisheries Management 31(4):757-764.       Barrett-Lennard, Lance G., Craig O. Matkin, John W. Durban, Eva L. Saulitis, and David Ellifrit. 2011. Predation on gray whales and prolonged feeding on submerged carcasses by transient killer whales at Unimak Island, Alaska. Marine Ecology Progress Series 421:229-241.     View Document Berkson, Jim, Luiz Barbieri, Steve Cadrin, Shannon Cass-Calay, Paul Crone, Martin Dorn, Claudia Friess, Donald Kobayashi, Thomas J. Miller, Wesley S. Patrick, Sarah Pautzke, Stephen Ralston, and Michael Trianni. 2011. Calculating acceptable biological catch for stocks that have reliable catch data only (Only Reliable Catch Stocks - ORCS). NOAA Technical Memorandum NMFS-SEFSC-616. 44 p.     View Document Bjorkstedt, Eric P., Ralf Goericke, Sam McClatchie, Ed Weber, William Watson, Nancy Lo, Bill Peterson, Bob Emmett, Ric Brodeur, Jay Peterson, Marisa Litz, Jose Gomez-Valdes, Gilberto Gaxiola-Castro, Bertha Lavaniegos, Francisco Chavez, Curtis A. Collins, John Field, Keith Sakuma, Steven J. Bograd, Franklin B. Schwing, Pete Warzybok, Russell Bradley, Jaime Jahncke, Gregory S. Campbell, John A. Hildebrand, William J. Sydeman, Sarah Ann Thompson, John L. Largier, Chris Halle, Sung Yong Kim, and Jeff Abell. 2011. State of the California Current 2010-2011: Regionally variable responses to a strong (but fleeting?) La Nina. CalCOFI Reports 52:36-68.       Black, Bryan A., Isaac D. Schroeder, William J. Sydeman, Steven J. Bograd, Brian K. Wells, and Franklin B. Schwing. 2011. Winter and summer upwelling modes and their biological importance in the California Current Ecosystem. Global Change Biology 17(8):2536-2545.       Felix, Fernando, Daniel M. Palacios, Sandie K. Salazar, Susana Caballero, Ben Haase, and Jessica Falconi. 2011. The 2005 Galapagos humpback whale expedition: a first attempt to assess and characterise the population in the archipelago. Journal of Cetacean Research and Management, Special Issue 3:291-299.       Finger, Amanda J., Eric C. Anderson, Molly R. Stephens, and Bernard P. May. 2011. Application of a method for estimating effective population size and admixture using diagnostic single nucleotide polymorphisms (SNPs): implications for conservation of threatened Paiute cutthroat trout (Oncorhynchus clarkii seleniris) in Silver King Creek, California. Canadian Journal of Fisheries and Aquatic Sciences 68(8):1369-1386.     View Document Fissel, Benjamin E., Nancy C.H. Lo, and Samuel F. Herrick Jr. 2011. Daily egg production, spawning biomass and recruitment for the central subpopulation of northern anchovy 1981-2009. CalCOFI Reports 52:116-135.     View Document Foote, Andrew D., Phillip A. Morin, John W. Durban, Eske Willerslev, Ludovic Orlando, and M. Thomas P. Gilbert. 2011. Out of the Pacific and back again: Insights into the matrilineal history of Pacific killer whale ecotypes. PLoS ONE 6(9):e24980, 7 p.       Foote, Andrew D., Phillip A. Morin, John W. Durban, Robert L. Pitman, Paul Wade, Eske Willerslev, M. Thomas P. Gilbert, and Rute R. da Fonseca. 2011. Positive selection on the killer whale mitogenome. Biology Letters 7(1):116-118.       Forney, Karin A., Donald R. Kobayashi, David W. Johnston, Jamie A. Marchetti, and Michael G. Marsik. 2011. What's the catch? Patterns of cetacean bycatch and depredation in Hawaii-based pelagic longline fisheries. Marine Ecology 32(3):380-391.     View Document Fujiwara, M., A. Greenberg, and M.S. Mohr. 2011. Effects of myxozoa disease on population dynamics of Klamath fall Chinook salmon [abstract]. In: Lyman Thorsteinson, Scott VanderKooi, and Walter Duffy (eds.), Proceedings of the Klamath Basin Science Conference (Medford, Oregon, February 1-5, 2010), p. 236. U.S. Geological Survey, Open File Report 2011-1196.       Fujiwara, Masami, Michael S. Mohr, Aaron Greenberg, J. Scott Foott, and Jerri L. Bartholomew. 2011. Effects of ceratomyxosis on population dynamics of Klamath fall-run Chinook salmon. Transactions of the American Fisheries Society 140(5):1380-1391.      
2012
View Document Jones, Darin T., Christopher D. Wilson, Alex De Robertis, Christopher N. Rooper, Thomas C. Weber, and John L. Butler. 2012. Evaluation of rockfish abundance in untrawlable habitat: combining acoustic and complementary sampling tools. Fishery Bulletin (U.S.) 110(3):332-343.       McKibben, S.M., P.G. Strutton, D.G. Foley, T.D. Peterson, and A.E. White. 2012. Satellite-based detection and monitoring of phytoplankton blooms along the Oregon coast. Journal of Geophysical Research 117(C12): C12002 (12 p.).       Pichel, William G., Timothy S. Veenstra, James H. Churnside, Elena Arabini, Karen S. Friedman, David G. Foley, Russell E. Brainard, Dale Kiefer, Simeon Ogle, Pablo Clemente-Colon, and Xiaofeng Li. 2012. GhostNet marine debris survey in the Gulf of Alaska: Satellite guidance and aircraft observations. Marine Pollution Bulletin 65(1-3):28-41.     View Document Rooper, Christopher N., Michael H. Martin, John L. Butler, Darin T. Jones, and Mark Zimmermann. 2012. Estimating species and size composition of rockfishes to verify targets in acoustic surveys of untrawlable areas. Fishery Bulletin (U.S.) 110(3):317-331.      
2011
  Abadia-Cardoso, Alicia, Anthony J. Clemento, and John Carlos Garza. 2011. Discovery and characterization of single-nucleotide polymorphisms in steelhead/rainbow trout, Oncorhynchus mykiss. Molecular Ecology Resources 11(Suppl.1):31-49.     View Document Adams, Peter B., L.B. Boydstun, Sean P. Gallagher, Michael K. Lacy, Trent McDonald, and Kevin E. Shaffer. 2011. California coastal salmonid population monitoring: strategy, design, and methods. California Department of Fish and Game, Fish Bulletin no. 180 (82 p.).     View Document Adams, Peter, Scott VanderKooi, and Thomas Williams. 2011. Freshwater and marine habitat communities. In: Lyman Thorsteinson, Scott VanderKooi, and Walter Duffy (eds.), Proceedings of the Klamath Basin Science Conference (Medford, Oregon, February 1-5, 2010), p. 111-121. U.S. Geological Survey, Open File Report 2011-1196.      
2012
View Document Becker, Elizabeth A., Karin A. Forney, D.G. Foley, and Jay Barlow. 2012. Density and spatial distribution patterns of cetaceans in the Central North Pacific based on habitat models. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-490, 34 p.     View Document Carretta, James V., Karin A. Forney, Erin Oleson, Karen Martien, Marcia M. Muto, Mark S. Lowry, Jay Barlow, Jason Baker, Brad Hanson, Deanna Lynch, Lilian Carswell, Robert L. Brownell Jr., Jooke Robbins, David K. Mattila, Katherine Ralls, and Marie C. Hill. 2012. U.S. Pacific marine mammal stock assessments: 2011. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-488, 356 p.     View Document O'Farrell, Michael R., Michael S. Mohr, Allen M. Grover, and William H. Satterthwaite. 2012. Sacramento River winter Chinook cohort reconstruction: analysis of ocean fishery impacts. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-491, 68 p.     View Document O'Farrell, Michael R., Shanae D. Allen, and Michael S. Mohr. 2012. The Winter-Run Harvest Model (WRHM). U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-489, 17 p.     View Document Thompson, Andrew R., William Watson, and Susan M. Manion. 2012. Ichthyoplankton and station data for surface (Manta) and oblique (Bongo) plankton tows for California Cooperative Oceanic Fisheries Investigations Cruises and California Current Ecosystem Survey in 2009. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-492, 155 p.      
2011
View Document Jaramillo-Legorreta, Armando M., Lorenzo Rojas-Bracho, Barb Taylor, Jay Barlow, and Nick Tregenza. 2011. Implementation of an acoustic monitoring scheme for vaquita, design and pilot test phases and a review of the Recovery Plan. Paper SC/63/SM22 presented to the International Whaling Commission, Scientific Committee (SC63 meeting, Tromso, Norway, 2011). 6 p.     View Document Lang, A.R., B.L. Taylor, J.C. Calambokidis, V.L. Pease, A. Klimek, J. Scordino, K.M. Robertson, D. Litovka, V. Burkanov, P. Gearin, J.C. George, and B. Mate. 2011. Assessment of stock structure among gray whales utilizing feeding grounds in the Eastern North Pacific. Paper SC/M11/AWMP4 presented to the International Whaling Commission, Scientific Committee (AWMP Workshop, La Jolla, California, March-April 2011). 22 p.     View Document Moore, Jeffrey E., and Russell Leaper. 2011. Partitioning variance components and reporting rates to estimate historical bycatch: an example for minke whales in Japan. Paper SC/63/BC1 presented to the International Whaling Commission, Scientific Committee (SC63 meeting, Tromso, Norway, 2011). 11 p.     View Document Perryman, Wayne L., Stephen B. Reilly, and Richard A. Rowlett. 2011. Results of surveys of northbound gray whale calves 2001-2010 and examination of the full seventeen year series of estimates from the Piedras Blancas Light Station. Paper SC/M11/AWMP3 presented to the International Whaling Commission, Scientific Committee (AWMP Workshop, La Jolla, California, March-April 2011). 11 p.     View Document Sremba, A., B. Hancock-Hanser, R. LeDuc, T.A. Branch, and C.S. Baker. 2011. A minimum census of surviving maternal lineages among contemporary Antarctic blue whales: progress report. Paper SC/63/SH13 presented to the International Whaling Commission, Scientific Committee (SC63 meeting, Tromso, Norway, 2011). 8 p.     View Document Weller, D.W., A. Klimek, A.L. Bradford, J. Calambokidis, A.R. Lang, B. Gisborne, A.M. Burdin, W. Szaniszlo, and R.L. Brownell Jr. 2011. Movements of western gray whales from the Okhotsk Sea to the eastern North Pacific. Paper SC/63/BRG6 presented to the International Whaling Commission, Scientific Committee (SC63 meeting, Tromso, Norway, 2011). 5 p.      
2012
View Document Baker, C. Scott, Barbara Galletti, Simon Childerhouse, Robert L. Brownell Jr., Ari Friedlaender, Nick Gales, Alisa Hall, Jen Jackson, Russell Leaper, Wayne Perryman, Debbie Steel, Luciano Valenzuela, and Alex Zerbini. 2012. Report of the Symposium and Workshop on Living Whales in the Southern Ocean (Puerto Varas, Chile, 27-29 March 2012). Paper SC/64/O14 (revised) presented to the International Whaling Commission, Scientific Committee (SC64 meeting, Panama City, Panama, 2012). 40 p.       Crandall, Eric D., Eric A. Treml, and Paul H. Barber. 2012. Coalescent and biophysical models of stepping-stone gene flow in neritid snails. Molecular Ecology 21(22):5579-5598.     View Document Dalebout, Merel L., C. Scott Baker, Debbie Steel, Kirsten Thompson, Kelly M. Robertson, Susan J. Chivers, William F. Perrin, Manori Goonatilake, R. Charles Anderson, James G. Mead, Charles W. Potter, Tadasu K. Yamada, Lisa Thompson, and Danielle Jupiter. 2012. A newly recognised beaked whale (Ziphiidae) in the tropical Indo-Pacific: Mesoplodon hotaulu or M. ginkgodens hotaula. Paper SC/64/SM3 presented to the International Whaling Commission, Scientific Committee (SC64 meeting, Panama City, Panama, 2012). 16 p.     View Document Galletti Vernazzani, Barbara, and Paula Olson. 2012. Progress of between region comparison under Southern Hemisphere Blue Whale Catalogue (SHBWC). Paper SC/64/SH20 presented to the International Whaling Commission, Scientific Committee (SC64 meeting, Panama City, Panama, 2012). 4 p.       Galletti Vernazzani, Barbara, Carole A. Carlson, Elsa Cabrera, and Robert L. Brownell Jr. 2012. Chilean blue whales off Isla Grande de Chiloe, 2004-2010: distribution, site-fidelity and behavior. Journal of Cetacean Research and Management 12(3):353-360.     View Document Galletti Vernazzani, Barbara, Robert L. Brownell Jr., Elsa Cabrera, Carole Carlson, and Mariano Sironi. 2012. Update on 2012 blue whale field season in Chile. Paper SC/64/SH18 presented to the International Whaling Commission, Scientific Committee (SC64 meeting, Panama City, Panama, 2012). 8 p.     View Document Lang, A.R., and K.K. Martien. 2012. Using a simulation-based approach to evaluate plausible levels of recruitment into the Pacific Coast Feeding Group of gray whales: Progress report and preliminary results. Paper SC/M12/AWMP4 presented to the International Whaling Commission, Scientific Committee (AWMP Workshop, La Jolla, California, March 2012). 22 p.     View Document Morin, Phillip A., Andrew Foote, John Durban, and Robert Pitman. 2012. Global killer whale phylogeography part II: mitogenome and nuclear genetic analysis using next-generation DNA sequencing and SNP genotypes. Paper SC/64/O18 presented to the International Whaling Commission, Scientific Committee (SC64 meeting, Panama City, Panama, 2012). 12 p.     View Document Olson, Paula A. 2012. Antarctic blue whale photo-identification catalogue summary. Paper SC/64/SH8 presented to the International Whaling Commission, Scientific Committee (SC64 meeting, Panama City, Panama, 2012). 5 p.      
2011
  Alfaro-Shigueto, Joanna, Jeffrey C. Mangel, Francisco Bernedo, Peter H. Dutton, Jeffrey A. Seminoff, and Brendan J. Godley. 2011. Small-scale fisheries of Peru: a major sink for marine turtles in the Pacific. Journal of Applied Ecology 48(6):1432-1440.       Block, B.A., I.D. Jonsen, S.J. Jorgensen, A.J. Winship, S.A. Shaffer, S.J. Bograd, E.L. Hazen, D.G. Foley, G.A. Breed, A.-L. Harrison, J.E. Ganong, A. Swithenbank, M. Castleton, H. Dewar, B.R. Mate, G.L. Shillinger, K.M. Schaefer, S.R. Benson, M.J. Weise, R.W. Henry, and D.P. Costa. 2011. Tracking apex marine predator movements in a dynamic ocean. Nature 475(7354):86-90.     View Document Breed, Greg A., Daniel P. Costa, Michael E. Goebel, and Patrick W. Robinson. 2011. Electronic tracking tag programming is critical to data collection for behavioral time-series analysis. Ecosphere 2(1):art10 (12 p.).     View Document Brewitt, K., E. Danner, S. Lindley, and A. Pike. 2011. Klamath River thermal refugia as critical habitat for threatened juvenile salmonids [abstract]. In: Lyman Thorsteinson, Scott VanderKooi, and Walter Duffy (eds.), Proceedings of the Klamath Basin Science Conference (Medford, Oregon, February 1-5, 2010), p. 273-274. U.S. Geological Survey, Open File Report 2011-1196.     View Document Galletti Vernazzani, Barbara, Jose L. Brito, Elsa Cabrera, Juan C. Cardenas, and Robert L. Brownell Jr. 2011. Sightings of southern right whales (Eubalaena australis) off Chile and Peru from 1975 to 2010. Paper SC/S11/RW22 presented to the International Whaling Commission, Scientific Committee (IWC Workshop on the Assessment of Southern Right Whales, Buenos Aires, Argentina, September 2011). 12 p.     View Document Hazen, Elliott L., Douglas P. Nowacek, Louis St. Laurent, Patrick N. Halpin, and David J. Moretti. 2011. The relationship among oceanography, prey fields, and beaked whale foraging habitat in the Tongue of the Ocean. PLoS ONE 6(4): E19269 (10 p.).     View Document Nowacek, Douglas P., Ari S. Friedlaender, Patrick N. Halpin, Elliott L. Hazen, David W. Johnston, Andrew J. Read, Boris Espinasse, Meng Zhou, and Yiwu Zhu. 2011. Super-aggregations of krill and humpback whales in Wilhelmina Bay, Antarctic Peninsula. PLoS ONE 6(4): e19173 (5 p.).     View Document Rowntree, Victoria, Marcela M. Uhart, Marian Sironi, Andrea Chirife, Luciano La Sala, Luciana M. Pozzi, Luciana Musmeci, Nadia Mohamed, Julian Andrejuk, Juan Emilio Sala, Alejandro Carribero, Marcelo Franco, Jon Seger, R.L. Brownell, and T. Rowles. 2011. High mortalities of southern right whales (Eubalaena australis) on their nursery ground at Peninsula Valdes, Argentina. Paper SC/S11/RW24 presented to the International Whaling Commission, Scientific Committee (IWC Workshop on the Assessment of Southern Right Whales, Buenos Aires, Argentina, September 2011). 22 p.     View Document Rowntree, Victoria, Marcela M. Uhart, Mariano Sironi, Andrea Chirife, Luciano La Sala, Luciana M. Pozzi, Luciana Musmeci, Nadia Mohamed, Julian Andrejuk, Juan Emilio Sala, Alejandro Carribero, Marcelo Franco, Jon Seger, R.L. Brownell, and T. Rowles. 2011. Mortalities of right whales (Eubalaena australis) at Peninsula Valdes between 1971 and 2010: recent increases and their possible causes. Paper SC/S11/RW2 presented to the International Whaling Commission, Scientific Committee (IWC Workshop on the Assessment of Southern Right Whales, Buenos Aires, Argentina, September 2011). 22 p.     View Document Wallace, Brian P., Andrew D. DiMatteo, Alan B. Bolten, Milani Y. Chaloupka, Brian J. Hutchinson, F. Alberto Abreu-Grobois, Jeanne A. Mortimer, Jeffrey A. Seminoff, Diego Amorocho, Karen A. Bjorndal, Jerome Bourjea, Brian W. Bowen, Raquel Briseno Duenas, Paolo Casale, B. C. Choudhury, Alice Costa, Peter H. Dutton, Alejandro Fallabrino, Elena M. Finkbeiner, Alexandre Girard, Marc Girondot, Mark Hamann, Brendan J. Hurley, Milagros Lopez-Mendilaharsu, Maria Angela Marcovaldi, John A. Musick, Ronel Nel, Nicolas J. Pilcher, Sebastian Troeng, Blair Witherington, and Roderic B. Mast. 2011. Global conservation priorities for marine turtles. PLoS ONE 6(9): e24510 (14 p.).       Witteveen, Briana H., Jan M. Straley, Ellen Chenoweth, C. Scott Baker, Jay Barlow, Craig Matkin, Christine M. Gabriele, Janet Neilson, Debbie Steel, Olga von Ziegesar, Alexander G. Andrews, and Amy Hirons. 2011. Using movements, genetics and trophic ecology to differentiate inshore from offshore aggregations of humpback whales in the Gulf of Alaska. Endangered Species Research 14(3):217-225.      
2012
  Martien, Karen K., Robin W. Baird, Nicole M. Hedrick, Antoinette M. Gorgone, Janet L. Thieleking, Daniel J. McSweeney, Kelly M. Robertson, and Daniel L. Webster. 2012. Population structure of island-associated dolphins: Evidence from mitochondrial and microsatellite markers for common bottlenose dolphins (Tursiops truncatus) around the main Hawaiian Islands. Marine Mammal Science 28(3):E208-E232.      
2011
  Komoroske, Lisa M., Rebecca L. Lewison, Jeffrey A. Seminoff, Dimitri D. Deheyn, and Peter H. Dutton. 2011. Pollutants and the health of green sea turtles resident to an urbanized estuary in San Diego, CA. Chemosphere 84(5):544-552.       Moore, Jeffrey E., and Jay Barlow. 2011. Bayesian state-space model of fin whale abundance trends from a 1991-2008 time series of line-transect surveys in the California Current. Journal of Applied Ecology 48(5):1195-1205.      
2012
  Foote, Andrew D., Michael Hofreiter, Phillip A. Morin. 2012. Ancient DNA from marine mammals: Studying long-lived species over ecology and evolutionary timescales. Annals of Anatomy 194(1):112-120.       Gaos, Alexander R., Rebecca L. Lewison, Ingrid L. Yanez, Bryan P. Wallace, Michael J. Liles, Wallace J. Nichols, Andres Baquero, Carlos R. Hasbun, Mauricio Vasquez, Jose Urteaga, and Jeffrey A. Seminoff. 2012. Shifting the life-history paradigm: discovery of novel habitat use by hawksbill turtles. Biology Letters 8(1):54-56.      
2011
  Santos, Robson, Agnaldo Silva Martins, Julyana da Nobrega Farias, Paulo Antunes Horta, Hudson Tercio Pinheiro, Evelise Torezani, Cecilia Baptistotte, Jeffrey A. Seminoff, George H. Balazs, and Thierry M. Work. 2011. Coastal habitat degradation and green sea turtle diets in Southeastern Brazil. Marine Pollution Bulletin 62(6):1297-1302.      
2012
  Lemons, Garrett E., Tomoharu Eguchi, Boyd N. Lyon, Robin LeRoux, and Jeffrey A. Seminoff. 2012. Effects of blood anticoagulants on stable isotope values of sea turtle blood tissue. Aquatic Biology 14(3):201-206.      
2011
View Document Barlow, Jay, Lisa T. Ballance, and Karin A. Forney. 2011. Effective strip widths for ship-based line-transect surveys of cetaceans. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-484, 28 p.       Bruno, Barbara C., Kimberly A. Tice, Noelani Puniwai, and Kate Achilles. 2011. Ocean acidification: hands-on experiments to explore the causes and consequences. Science Scope 34(6):23-30.       Carretta, James V., and Jay Barlow. 2011. Long-term effectiveness, failure rates, and "dinner bell" properties of acoustic pingers in a gillnet fishery. Marine Technology Society Journal 45(5):7-19.     View Document Carretta, James V., Karin A. Forney, Erin Oleson, Karen Martien, Marcia M. Muto, Mark S. Lowry, Jay Barlow, Jason Baker, Brad Hanson, Deanna Lynch, Lilian Carswell, Robert L. Brownell Jr., Jooke Robbins, David K. Mattila, Katherine Ralls, and Marie C. Hill. 2011. U.S. Pacific marine mammal stock assessments: 2010. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-476, 352 p.     View Document Charter, Sharon R., William Watson, and Susan M. Manion. 2011. Ichthyoplankton and station data for surface (Manta) and oblique (Bongo) plankton tows for California Cooperative Oceanic Fisheries Investigations survey cruises in 2007. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-478, 112 p.     View Document Chen, Yong, Ray Conser, James Ianelli, and Kevin Stokes. 2011. Petrale sole: Stock Assessment Review (STAR) Panel report (Seattle, Washington, 20-24 June 2011). Pacific Fishery Management Council, Portland, Oregon. 17 p.     View Document Chen, Yong, Ray Conser, James Ianelli, and Kevin Stokes. 2011. Pacific ocean perch: Stock Assessment Review (STAR) Panel report (Seattle, Washington, 20-24 June 2011). Pacific Fishery Management Council, Portland, Oregon. 17 p.       Childers, John, Stephanie Snyder, and Suzanne Kohin. 2011. Migration and behavior of juvenile North Pacific albacore (Thunnus alalunga). Fisheries Oceanography 20(3):157-173.       Claiborne, Andrew M., Joseph P. Fisher, Sean A. Hayes, and Robert L. Emmett. 2011. Size at release, size-selective mortality, and age at maturity of Willamette River hatchery yearling Chinook salmon. Transactions of the American Fisheries Society 140(4):1135-1144.       Clemento, A.J., A. Abadia-Cardoso, H.A. Starks, and J.C. Garza. 2011. Discovery and characterization of single nucleotide polymorphisms in Chinook salmon, Oncorhynchus tshawytscha. Molecular Ecology Resources 11(Suppl.1):50-66.       Cope, Jason M., John DeVore, E.J. Dick, Kelly Ames, John Budrick, Daniel L. Erickson, Joanna Grebel, Gretchen Hanshew, Robert Jones, Lynn Mattes, and Corey Niles. 2011. An approach to defining stock complexes for U.S. west coast groundfishes using vulnerabilities and ecological distributions. North American Journal of Fisheries Management 31(4):589-604.       Cossio, Anthony M., and Christian Reiss. 2011. Bioacoustic survey. In: Amy Van Cise (ed.), AMLR 2009/2010 field season report: objectives, accomplishments and tentative conclusions, p. 12-16. U.S. Department of Commerce, NOAA Technical Memorandum NMFS-SWFSC-470.       Cossio, Anthony, Christian Reiss, and Ryan Driscoll. 2011. A re-analysis and update of the Antarctic krill biomass in the South Shetland Islands, through 2011. CCAMLR Working Group on Ecosystem Monitoring and Management (Busan, Republic of Korea, 11-22 July 2011), Document no. WG-EMM-11/26.       Cowan, J.H., Jr., C.B. Grimes, W.F. Patterson III, C.J. Walters, A.C. Jones, W.J. Lindberg, D.J. Sheehy, W.E. Pine III, J.E. Powers, M.D. Campbell, K.C. Lindeman, S.L. Diamond, R. Hilborn, H.T. Gibson, and K.A. Rose. 2011. Red snapper management in the Gulf of Mexico: science- or faith-based? Reviews in Fish Biology and Fisheries 21(2):187-204.       Danil, Kerri, and Judy A. St. Leger. 2011. Seabird and dolphin mortality associated with underwater detonation exercises. Marine Technology Society Journal 45(6):89-95.     View Document Danner, E., S. Lindley, A. Pike, and K. Brewitt. 2011. Klamath River stream temperature modeling and use of thermal refugia by salmonids [abstract]. In: Lyman Thorsteinson, Scott VanderKooi, and Walter Duffy (eds.), Proceedings of the Klamath Basin Science Conference (Medford, Oregon, February 1-5, 2010), p. 259-260. U.S. Geological Survey, Open File Report 2011-1196.       Dewar, Heidi, Eric D. Prince, Michael K. Musyl, Richard W. Brill, Chugey Sepulveda, Jiangang Luo, David Foley, Eric S. Orbesen, Michael L. Domeier, Nicole Nasby-Lucas, Derke Snodgrass, R. Michael Laurs, John P. Hoolihan, Barbara A. Block, and Lianne M. McNaughton. 2011. Movements and behaviors of swordfish in the Atlantic and Pacific Oceans examined using pop-up satellite archival tags. Fisheries Oceanography 20(3):219-241.     View Document Dick, E.J. 2011. Cowcod status report. Report to the Pacific Fishery Management Council, Portland, Oregon. 17 p.       Dick, E.J., and Alec D. MacCall. 2011. Depletion-Based Stock Reduction Analysis: A catch-based method for determining sustainable yields for data-poor fish stocks. Fisheries Research 110(2):331-341.     View Document Dick, E.J., Don Pearson, and Steve Ralston. 2011. Status of greenspotted rockfish, Sebastes chlorostictus, in U.S. waters off California. Report to the Pacific Fishery Management Council, Portland, Oregon. 340 p.       Dietrich, Kim, Amy Van Cise, Ryan Driscoll, Jasmine Maurer, Nicolas Sanchez, Ian Bystrom, Nissa Ferm, Garrett Lemons, Ashley Maloney, Summer Martin, and Suzanne Romain. 2011. Zooplankton abundance around the South Shetland Islands, Antarctica. In: Amy Van Cise (ed.), AMLR 2009/2010 field season report: objectives, accomplishments and tentative conclusions, p. 17-23. U.S. Department of Commerce, NOAA Technical Memorandum NMFS-SWFSC-470.       Dorman, Jeffrey G., Thomas M. Powell, William J. Sydeman, and Steven J. Bograd. 2011. Advection and starvation cause krill (Euphausia pacifica) decreases in 2005 Northern California coastal populations: implications from a model study. Geophysical Research Letters 38:L04605 (5 p.).       Dorval, Emmanis, Kevin Piner, Larry Robertson, Christian S. Reiss, Barbara Javor, and Russ Vetter. 2011. Temperature record in the oxygen stable isotopes of Pacific sardine otoliths: experimental vs. wild stocks from the Southern California Bight. Journal of Experimental Marine Biology and Ecology 397(2):136-143.     View Document Duchene, Sebastian, Frederick I. Archer, Julia Vilstrup, Susana Caballero, and Phillip A. Morin. 2011. Mitogenome phylogenetics: the impact of using single regions and partitioning schemes on topology, substitution rate and divergence time estimation. PLoS ONE 6(11): e27138.       Duffy, Walter G., Eric P. Bjorkstedt, and Christopher S. Ellings. 2011. Predation on juvenile Pacific salmon Oncorhynchus spp. in downstream migrant traps in Prairie Creek, California. North American Journal of Fisheries Management 31(1):151-164.     View Document Durban, J., D. Weller, A. Lang, and W. Perryman. 2011. Abundance indices of eastern North Pacific gray whales from southbound migration counts, 2007-2011. Paper SC/63/BRG7 presented to the International Whaling Commission, Scientific Committee (SC63 meeting, Tromso, Norway, 2011). 4 p.       Fearnbach, Holly, John W. Durban, Dave K. Ellifrit, and Ken C. Balcomb III. 2011. Size and long-term growth trends of Endangered fish-eating killer whales. Endangered Species Research 13(3):173-180.       Jones, Christopher D., David A. Bowden, and Stefano Schiaparelli. 2011. Dense stalked crinoid dominated assemblages on Admiralty Seamount in the northern Ross Sea (Subarea 88.1G): two potential VMEs. CCAMLR Working Group on Ecosystem Monitoring and Management (Busan, Republic of Korea, 11-22 July 2011), Document no. WG-EMM-11/10.     View Document Jones, T. Todd, Brian Bostrom, Michael Carey, Brittany Imlach, Jon Mikkelsen, Peter Ostafichuk, Scott Eckert, Patrick Opay, Yonat Swimmer, Jeffrey Seminoff, and David R. Jones. 2011. Determining transmitter drag and best-practice attachment procedures for sea turtle biotelemetry. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-480, 58 p.       Lo, Nancy C.H., Beverly J. Macewicz, and David A. Griffith. 2011. Migration of Pacific sardine (Sardinops sagax) off the west coast of United States in 2003-2005. Bulletin of Marine Science 87(3):395-412.     View Document Lowry, Mark S. 2011. Photographic catalog of California marine fish otoliths: prey of California sea lions (Zalophus californianus). U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-483, 250 p.     View Document Moustahfid, Hassan, Churchill Grimes, John Kocik, Barbara Block, Kim Holland, John Payne, Dewayne Fox, Andrew Seitz, and Charles Alexander. 2011. Toward a national Animal Telemetry Observing Network (ATN) for our oceans, coasts and great lakes: workshop synthesis report (U.S. IOOS workshop, March 2011, Santa Cruz, California). U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-482, 51 p.     View Document Palacios, Daniel M., Sandie K. Salazar, and F. Hernan Vargas. 2011. Galapagos marine vertebrates: responses to environmental variability and potential impacts of climate change. In: Irma Larrea Ona and Giuseppe Di Carlo (eds.), Climate change vulnerability assessment of the Galapagos Islands, p. 69-80. WWF and Conservation International, USA.     View Document Perrin, William F., and Susan J. Chivers. 2011. Osteological specimens of tropical dolphins (Delphinus, Grampus, Lagenodelphis, Stenella, Steno and Tursiops) killed in the tuna fishery in the eastern tropical Pacific (1966-1992) and placed in museums by SWFSC. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-477, 87 p.       Siegel, V., C. Reiss, K. Dietrich, M. Haraldsson, and G. Rohardt. 2011. Antarctic krill demography and population dynamics west of the Antarctic Peninsula in 2010/11. CCAMLR Working Group on Ecosystem Monitoring and Management (Busan, Republic of Korea, 11-22 July 2011), Document no. WG-EMM-11/11.     View Document Spence, Brian C., and Thomas H. Williams. 2011. Status review update for Pacific salmon and steelhead listed under the Endangered Species Act: Central California Coho Salmon ESU. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-475, 15 p.     View Document Watson, William, and Susan M. Manion. 2011. Ichthyoplankton, paralarval cephalopod, and station data for surface (Manta) and oblique (Bongo) plankton tows for California Cooperative Oceanic Fisheries Investigations survey [and] California Current Ecosystem Survey cruises in 2008. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-481, 173 p.     View Document Yack, Tina M., Jay Barlow, John Calambokidis, Lisa Ballance, Robert Pitman, and Megan McKenna. 2011. Passive acoustic beaked whale monitoring survey of the Channel Islands, California. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-479, 18 p.      
2012
  Hinke, Jefferson T., Michael J. Polito, Christian S. Reiss, Susan G. Trivelpiece, and Wayne Z. Trivelpiece. 2012. Flexible reproductive timing can buffer reproductive success of Pygoscelis spp. penguins in the Antarctic Peninsula region. Marine Ecology Progress Series 454:91-104.      
2013
  Demer, David A., Juan P. Zwolinski, George R. Cutter Jr., Kyle A. Byers, Beverly J. Macewicz, and Kevin T. Hill. 2013. Sampling selectivity in acoustic-trawl surveys of Pacific sardine (Sardinops sagax) biomass and length distribution. ICES Journal of Marine Science 70(7):1369-1377.     View Document Dorval, Emmanis, Jennifer D. McDaniel, Dianna L. Porzio, Robert Felix-Uraga, Vanessa Hodes, and Sandra A. Rosenfield. 2013. Computing and selecting ageing errors to include in stock assessment models of Pacific sardine (Sardinops sagax). CalCOFI Reports 54:192-204.     View Document Fiedler, Paul. 2013. Review of "Regional fisheries oceanography of the California Current System and the CalCOFI program" by Sam McClatchie [book review]. CalCOFI Reports 54:11.       Griffiths, Shane P., Robert J. Olson, and George M. Watters. 2013. Complex wasp-waist regulation of pelagic ecosystems in the Pacific Ocean. Reviews in Fish Biology and Fisheries 23(4):459-475.       Guy, T.J., S.L. Jennings, R.M. Suryan, E.F. Melvin, M.A. Bellman, L.T. Ballance, B.A. Blackie, D.A. Croll, T. Deguchi, T.O. Geernaert, R.W. Henry, M. Hester, K.D. Hyrenbach, J. Jahncke, M.A. Kappes, K. Ozaki, J. Roletto, F. Sato, W.J. Sydeman, and J.E. Zamon. 2013. Overlap of North Pacific albatrosses with the U.S. west coast groundfish and shrimp fisheries. Fisheries Research 147:222-234.       Huff, David D., Mary M. Yoklavich, Milton S. Love, Diana L. Watters, Fei Chai, and Steven T. Lindley. 2013. Environmental factors that influence the distribution, size, and biotic relationships of the Christmas tree coral Antipathes dendrochristos in the Southern California Bight. Marine Ecology Progress Series 494:159-177.     View Document Javor, Barbara J. 2013. Do shifts in otolith morphology of young Pacific sardine (Sardinops sagax) reflect changing recruitment contributions from northern and southern stocks? CalCOFI Reports 54:85-96.       Kellar, Nicholas M., Marisa L. Trego, Susan J. Chivers, Fredrick I. Archer, Jeremiah J. Minich, and Wayne L. Perryman. 2013. Are there biases in biopsy sampling? Potential drivers of sex ratio in projectile biopsy samples from two small delphinids. Marine Mammal Science 29(4): E366-E389.       Lennert-Cody, Cleridy E., Jeremy D. Rusin, Mark N. Maunder, Edward H. Everett, Erick D. Largacha Delgado, and Patrick K. Tomlinson. 2013. Studying small purse-seine vessel fishing behavior with tuna catch data: Implications for eastern Pacific Ocean dolphin conservation. Marine Mammal Science 29(4):643-668.       Martien, K.K., D.P. Gregovich, and A.E. Punt. 2013. Defining the appropriate 'Unit-To-Conserve' under the International Whaling Commission's revised management procedure. Journal of Cetacean Research and Management 13(1):31-38.       Moore, J.E., K.A. Curtis, R.L. Lewison, P.W. Dillingham, J.M. Cope, S.V. Fordham, S.S. Heppell, S.A. Pardo, C.A. Simpfendorfer, G.N. Tuck, and S. Zhou. 2013. Evaluating sustainability of fisheries bycatch mortality for marine megafauna: a review of conservation reference points for data-limited populations. Environmental Conservation 40(4):329-344.     View Document National Marine Fisheries Service, Coho Salmon Captive Broodstock Program. 2013. Mission statement and five-year plan: Coho salmon captive broodstock program. National Marine Fisheries Service, Southwest Fisheries Science Center, Fisheries Ecology Division, Santa Cruz, California. 18 p.       Nowacek, Douglas P., Koen Broker, Greg Donovan, Glenn Gailey, Roberto Racca, Randall R. Reeves, Alexander I. Vedenev, David W. Weller, and Brandon L. Southall. 2013. Responsible practices for minimizing and monitoring environmental impacts of marine seismic surveys with an emphasis on marine mammals. Aquatic Mammals 39(4):356-377.     View Document Ralston, Stephen, and Ian J. Stewart. 2013. Anomalous distributions of pelagic juvenile rockfish on the U.S. West Coast in 2005 and 2006. CalCOFI Reports 54:155-166.       Robertson, Kelly M., Jeremiah Minich, Amanda J. Bowman, and Phillip A. Morin. 2013. A thin soup: extraction and amplification of DNA from DMSO and ethanol used as preservative for cetacean tissue samples. Conservation Genetics Resources 5(4):929-933.     View Document Rogers-Bennett, Laura, Sam McClatchie, and Dave Checkley. 2013. Report of the CalCOFI Committee 2012. CalCOFI Reports 54:5-10.     View Document Sakuma, Keith M., Eric P. Bjorkstedt, and Stephen Ralston. 2013. Distribution of pelagic juvenile rockfish (Sebastes spp.) in relation to temperature and fronts off central California. CalCOFI Reports 54:167-179.     View Document Weber, Edward D., and Thomas J. Moore. 2013. Corrected conversion algorithms for the CalCOFI station grid and their implementation in several computer languages. CalCOFI Reports 54:97-106.     View Document Wells, Brian K., Isaac D. Schroeder, Jarrod A. Santora, Elliott L. Hazen, Steven J. Bograd, Eric P. Bjorkstedt, Valerie J. Loeb, Sam McClatchie, Edward D. Weber, William Watson, Andrew R. Thompson, William T. Peterson, Richard D. Brodeur, Jeff Harding, John Field, Keith Sakuma, Sean Hayes, Nathan Mantua, William J. Sydeman, Marcel Losekoot, Sarah Ann Thompson, John Largier, Sung Yong Kim, Francisco P. Chavez, Caren Barcelo, Pete Warzybok, Russel Bradley, Jaime Jahncke, Ralf Goericke, Gregory S. Campbell, John A. Hildebrand, Sharon R. Melin, Robert L. DeLong, Jose Gomez-Valdes, Bertha Lavaniegos, Gilberto Gaxiola-Castro, Richard T. Golightly, Stephanie R. Schneider, Nancy Lo, Robert M. Suryan, Amanda J. Gladics, Cheryl A. Horton, Jennifer Fisher, Cheryl Morgan, Jay Peterson, Elizabeth A. Daly, Toby D. Auth, and Jeffrey Abell. 2013. State of the California Current 2012-13: No such thing as an "average" year. CalCOFI Reports 54:37-71.       West, Kristi L., Susan Sanchez, David Rotstein, Kelly M. Robertson, Sophie Dennison, Gregg Levine, Nicole Davis, David Shofield, Charles W. Potter, and Brenda Jensen. 2013. A Longman's beaked whale (Indopacetus pacificus) strands in Maui, Hawaii, with first case of morbillivirus in the central Pacific. Marine Mammal Science 29(4):767-776.       Zhao, X., D. Wang, S.T. Turvey, B. Taylor, and T. Akamatsu. 2013. Distribution patterns of Yangtze finless porpoises in the Yangtze River: implications for reserve management. Animal Conservation 16(5):509-518.       Zwolinski, Juan P., and David A. Demer. 2013. Measurements of natural mortality for Pacific sardine (Sardinops sagax). ICES Journal of Marine Science 70(7):1408-1415.      
2014
  Garza, John Carlos, Elizabeth A. Gilbert-Horvath, Brian C. Spence, Thomas H. Williams, Heidi Fish, Stephen A. Gough, Joseph H. Anderson, David Hamm, and Eric C. Anderson. 2014. Population structure of steelhead in coastal California. Transactions of the American Fisheries Society 143(1):134-152.       Hess, Jon E., Paul Chittaro, Anna Elz, Elizabeth A. Gilbert-Horvath, Victor Simon, and John Carlos Garza. 2014. Cryptic population structure in the severely depleted cowcod, Sebastes levis. Canadian Journal of Fisheries and Aquatic Sciences 71(1):81-92.       Satterthwaite, William H., Michael S. Mohr, Michael R. O'Farrell, Eric C. Anderson, Michael A. Banks, Sarah J. Bates, M. Renee Bellinger, Lisa A. Borgerson, Eric D. Crandall, John Carlos Garza, Brett J. Kormos, Peter W. Lawson, and Melodie L. Palmer-Zwahlen. 2014. Use of genetic stock identification data for comparison of the ocean spatial distribution, size at age, and fishery exposure of an untagged stock and its indicator: California Coastal versus Klamath River Chinook salmon. Transactions of the American Fisheries Society 143(1):117-133.       Schunter C., J.C. Garza, E. Macpherson, and M. Pascual. 2014. SNP development from RNA-seq data in a nonmodel fish: how many individuals are needed for accurate allele frequency prediction? Molecular Ecology Resources 14(1):157-165.       Spence, Brian C., and E.J. Dick. 2014. Geographic variation in environmental factors regulating outmigration timing of coho salmon (Oncorhynchus kisutch) smolts. Canadian Journal of Fisheries and Aquatic Sciences 71(1):56-69.      
2013
  Dorval, Emmanis, Paul R. Crone, and Jennifer D. McDaniel. 2013. Variability of egg escapement, fishing mortality and spawning population in the market squid fishery in the California Current Ecosystem. Marine and Freshwater Research 64(1):80-90.      
2014
  Becker, Elizabeth A., Karin A. Forney, David G. Foley, Raymond C. Smith, Thomas J. Moore, and Jay Barlow. 2014. Predicting seasonal density patterns of California cetaceans based on habitat models. Endangered Species Research 23(1):1-22.       Fearnbach, Holly, John W. Durban, David K. Ellifrit, Janice M. Waite, Craig O. Matkin, Chris R. Lunsford, Megan J. Peterson, Jay Barlow, and Paul R. Wade. 2014. Spatial and social connectivity of fish-eating "Resident" killer whales (Orcinus orca) in the northern North Pacific. Marine Biology 161(2):459-472.       Huff, David D. 2014. Billion-dollar fish: The untold story of Alaska Pollock, by Kevin M. Bailey [book review]. Quarterly Review of Biology 89(1):69-70.      
2013
  Jones, T. Todd, Kyle S. Van Houtan, Brian L. Bostrom, Peter Ostafichuk, Jon Mikkelsen, Emre Tezcan, Michael Carey, Brittany Imlach, and Jeffrey A. Seminoff. 2013. Calculating the ecological impacts of animal-borne instruments on aquatic organisms. Methods in Ecology and Evolution 4(12):1178-1186.      
2014
  Frey, Amy, Peter H. Dutton, Donna J. Shaver, Jennifer Shelby Walker, and Cynthia Rubio. 2014. Kemp's ridley Lepidochelys kempii nesting abundance in Texas, USA: a novel approach using genetics to improve population census. Endangered Species Research 23(1):63-71.       Yim, Hyung-Soon, Yun Sung Cho, Xuanmin Guang, Sung Gyun Kang, Jae-Yeon Jeong, Sun-Shin Cha, Hyun-Myung Oh, Jae-Hak Lee, Eun Chan Yang, Kae Kyoung Kwon, Yun Jae Kim, Tae Wan Kim, Wonduck Kim, Jeong Ho Jeon, Sang-Jin Kim, Dong Han Choi, Sungwoong Jho, Hak-Min Kim, Junsu Ko, Hyunmin Kim, Young-Ah Shin, Hyun-Ju Jung, Yuan Zheng, Zhuo Wang, Yan Chen, Ming Chen, Awei Jiang, Erli Li, Shu Zhang, Haolong Hou, Tae Hyung Kim, Lili Yu, Sha Liu, Kung Ahn, Jesse Cooper, Sin-Gi Park, Chang Pyo Hong, Wook Jin, Heui-Soo Kim, Chankyu Park, Kyooyeol Lee, Sung Chun, Phillip A. Morin, Stephen J. O'Brien, Hang Lee, Jumpei Kimura, Dae Yeon Moon, Andrea Manica, Jeremy Edwards, Byung Chul Kim, Sangsoo Kim, Jun Wang, Jong Bhak, Hyun Sook Lee, and Jung-Hyun Lee. 2014. Minke whale genome and aquatic adaptation in cetaceans. Nature Genetics 46(1):88-92.      
2013
  Baker, C. Scott, Debbie Steel, John Calambokidis, Erin Falcone, Ursula Gonzalez-Peral, Jay Barlow, Alexander M. Burdin, Phillip J. Clapham, John K.B. Ford, Christine M. Gabriele, David Mattila, Lorenzo Rojas-Bracho, Janice M. Straley, Barbara L. Taylor, Jorge Urban, Paul R. Wade, David Weller, Briana H. Witteveen, and Manami Yamaguchi. 2013. Strong maternal fidelity and natal philopatry shape genetic structure in North Pacific humpback whales. Marine Ecology Progress Series 494:291-306.      
2014
  Galletti Vernazzani, Barbara, Elsa Cabrera, and Robert L. Brownell Jr. 2014. Eastern South Pacific southern right whale photo-identification catalog reveals behavior and habitat use patterns. Marine Mammal Science 30(1):389-398.       Jefferson, Thomas A., Caroline R. Weir, R. Charles Anderson, Lisa T. Ballance, Robert D. Kenney, and Jeremy J. Kiszka. 2014. Global distribution of Risso's dolphin Grampus griseus: a review and critical evaluation. Mammal Review 44(1):56-68.      
2013
  Slooten, Elisabeth, John Y. Wang, Sarah Z. Dungan, Karin A. Forney, Samuel K. Hung, Thomas A. Jefferson, Kimberly N. Riehl, Lorenzo Rojas-Bracho, Peter S. Ross, Ashley Wee, Robin Winkler, Shih-Chu Yang, and Chaolun A. Chen. 2013. Impacts of fisheries on the Critically Endangered humpback dolphin Sousa chinensis population in the eastern Taiwan Strait. Endangered Species Research 22(2):99-114.      
2014
  Demer, David A., and Juan P. Zwolinski. 2014. Corroboration and refinement of a method for differentiating landings from two stocks of Pacific sardine (Sardinops sagax) in the California Current. ICES Journal of Marine Science 71(2):328-335.       Gruenthal, K.M., D.A. Witting, T. Ford, M.J. Neuman, J.P. Williams, D.J. Pondella II, A. Bird, N. Caruso, J.R. Hyde, L.W. Seeb, and W.A. Larson. 2014. Development and application of genomic tools to the restoration of green abalone in southern California. Conservation Genetics 15(1):109-121.      
2013
  Boughton, David A., and Andrew S. Pike. 2013. Floodplain rehabilitation as a hedge against hydroclimatic uncertainty in a migration corridor of threatened steelhead. Conservation Biology 27(6):1158-1168.       McClure, Michelle M., Michael Alexander, Diane Borggaard, David Boughton, Lisa Crozier, Roger Griffis, Jeffrey C. Jorgensen, Steven T. Lindley, Janet Nye, Melanie J. Rowland, Erin E. Seney, Amy Snover, Christopher Toole, and Kyle Van Houtan. 2013. Incorporating climate science in applications of the U.S. Endangered Species Act for aquatic species. Conservation Biology 27(6):1222-1233.     View Document Riskas, Kimberly A., and Manjula Tiwari. 2013. An overview of fisheries and sea turtle bycatch along the Atlantic coast of Africa. Munibe Monographs, Nature Series 1:71-82.      
2014
  Beakes, M.P., J.W. Moore, N. Retford, R. Brown, J.E. Merz, and S.M. Sogard. 2014. Evaluating statistical approaches to quantifying juvenile Chinook salmon habitat in a regulated California river. River Research and Applications 30(2):180-191.       Beakes, M.P., S. Sharron, R. Charish, J.W. Moore, W.H. Satterthwaite, E. Sturm, B.K. Wells, S.M. Sogard, and M. Mangel. 2014. Using scale characteristics and water temperature to reconstruct growth rates of juvenile steelhead Oncorhynchus mykiss. Journal of Fish Biology 84(1):58-72.      
2013
View Document Mohr, Michael S., and William H. Satterthwaite. 2013. Coded wire tag expansion factors for Chinook salmon carcass surveys in California: estimating the numbers and proportions of hatchery-origin fish. San Francisco Estuary and Watershed Science 11(4): article 3 (17 p.).       Rowntree, Victoria J., Marcela M. Uhart, Mariano Sironi, Andrea Chirife, Matias Di Martino, Luciano La Sala, Luciana Musmeci, Nadia Mohamed, Julian Andrejuk, Denise McAloose, Juan Emilio Sala, Alejandro Carribero, Heather Rally, Marcelo Franco, Frederick R. Adler, Robert L. Brownell Jr., Jon Seger, and Teri Rowles. 2013. Unexplained recurring high mortality of southern right whale Eubalaena australis calves at Peninsula Valdes, Argentina. Marine Ecology Progress Series 493:275-289.      
2014
  Hays, Graeme C., Asbjorn Christensen, Sabrina Fossette, Gail Schofield, Julian Talbot, and Patrizio Mariani. 2014. Route optimization and solving Zermelo's navigation problem during long distance migration in cross flows. Ecology Letters 17(2):137-143.      
2013
  Snover, Amy K., Nathan J. Mantua, Jeremy S. Littell, Michael A. Alexander, Michelle M. McClure, and Janet Nye. 2013. Choosing and using climate-change scenarios for ecological-impact assessments and conservation decisions. Conservation Biology 27(6):1147-1157.       Wallace, B.P., M. Tiwari, and M. Girondot. 2013. Dermochelys coriacea. In: IUCN 2013. IUCN Red List of Threatened Species, version 2013.2. .      
2014
  Anderson, Eric C., Hans J. Skaug, and Daniel J. Barshis. 2014. Next-generation sequencing for molecular ecology: a caveat regarding pooled samples. Molecular Ecology 23(3):502-512.     View Document Fujiwara, Masami, Michael S. Mohr, and Aaron Greenberg. 2014. The effects of disease-induced juvenile mortality on the transient and asymptotic population dynamics of Chinook salmon (Oncorhynchus tshawytscha). PLOS ONE 9(1): e85464 (10 p.).      
2013
  Baird, Robin W., Erin M. Oleson, Jay Barlow, Allan D. Ligon, Antoinette M. Gorgone, and Sabre D. Mahaffy. 2013. Evidence of an island-associated population of false killer whales (Pseudorca crassidens) in the Northwestern Hawaiian Islands. Pacific Science 67(4):513-521.       Baker, C.S., A. Hutt, K. Thompson, M.L. Dalebout, J. Robins, R.L. Brownell Jr., and G.S. Stone. 2013. Species identity and human consumption of beaked whales in the Gilbert Islands, Republic of Kiribati. Animal Conservation 16(6):641-647.       Brault, Emily K., Michael E. Goebel, Heidi N. Geisz, Elizabeth A. Canuel, and Rebecca M. Dickhut. 2013. Inter-annual variation of persistent organic pollutants (POPs) in an Antarctic top predator Arctocephalus gazella. Environmental Science and Technology 47(22):12744-12752.       Gutt, Julian, Huw J. Griffiths, and Christopher D. Jones. 2013. Circumpolar overview and spatial heterogeneity of Antarctic macrobenthic communities. Marine Biodiversity 43(4):481-487.     View Document Hazen, Elliott L., Isaac D. Schroeder, Jay Peterson, William T. Peterson, William J. Sydeman, Sarah A. Thompson, Brian K. Wells, and Steven J. Bograd. 2013. Oceanographic and climatic drivers and pressures. In: Phillip S. Levin, Brian K. Wells, and Mindi B. Sheer (eds.), Integrated ecosystem assessment of the California Current: Phase II report 2012, p. 13-70. U.S. NOAA National Marine Fisheries Service.       Jacobson, Larry D., and Sam McClatchie. 2013. Comment on temperature-dependent stock-recruitment modeling for Pacific sardine (Sardinops sagax) in Jacobson and MacCall (1995), McClatchie et al. (2010), and Lindegren and Checkley (2013). Canadian Journal of Fisheries and Aquatic Sciences 70(10):1566-1569.       Jensen, Michael P., Colin J. Limpus, Scott D. Whiting, Michael Guinea, Robert I.T. Prince, Kiki E.M. Dethmers, Ida Bagus Windia Adnyana, Rod Kennett, and Nancy N. FitzSimmons. 2013. Defining olive ridley turtle Lepidochelys olivacea management units in Australia and assessing the potential impact of mortality in ghost nets. Endangered Species Research 21(3):241-253.     View Document Kaplan, Isaac C., Christopher J. Brown, Elizabeth A. Fulton, Iris A. Gray, John C. Field, and Anthony D.M. Smith. 2013. Appendix MS3: Impacts of depleting forage species in the California Current [abstract]. In: Phillip S. Levin, Brian K. Wells, and Mindi B. Sheer (eds.), Integrated ecosystem assessment of the California Current: Phase II report 2012, p. 860. U.S. NOAA National Marine Fisheries Service.     View Document Kaplan, Isaac C., Dan S. Holland, Ian G. Taylor, Kurt L. Fresh, Phillip S. Levin, Iris A. Gray, Jerry Leonard, Kristin Marshall, Blake E. Feist, Mark L. Plummer, Cynthia Thomson, Noble Hendrix, Elizabeth A. Fulton, Christopher J. Brown, John C. Field, and Anthony D. Smith. 2013. Management testing and scenarios in the California Current. In: Phillip S. Levin, Brian K. Wells, and Mindi B. Sheer (eds.), Integrated ecosystem assessment of the California Current: Phase II report 2012, p. 730-778. U.S. NOAA National Marine Fisheries Service.       Kellar, Nicholas M., Marisa L. Trego, Susan J. Chivers, and Fredrick I. Archer. 2013. Pregnancy patterns of pantropical spotted dolphins (Stenella attenuata) in the eastern tropical Pacific determined from hormonal analysis of blubber biopsies and correlations with the purse-seine tuna fishery. Marine Biology 160(12):3113-3124.       Kershaw, Francine, Matthew S. Leslie, Tim Collins, Rubaiyat M. Mansur, Brian D. Smith, Gianna Minton, Robert Baldwin, Richard G. LeDuc, R. Charles Anderson, Robert L. Brownell Jr., and Howard C. Rosenbaum. 2013. Population differentiation of 2 forms of Bryde's whales in the Indian and Pacific Oceans. Journal of Heredity 104(6):755-764.       LaCasella, Erin L., Sheryan P. Epperly, Michael P. Jensen, Lesley Stokes, and Peter H. Dutton. 2013. Genetic stock composition of loggerhead turtles Caretta caretta bycaught in the pelagic waters of the North Atlantic. Endangered Species Research 22(1):73-84.       Lang, Aimee R. 2013. Insight into the behavior of gray whales using genetics. Special issue: Gray whale, from devilfish to gentle giants. Whalewatcher 42(1):36-41.     View Document Levin, Phillip S., and Brian K. Wells. 2013. Preface. In: Phillip S. Levin, Brian K. Wells, and Mindi B. Sheer (eds.), Integrated ecosystem assessment of the California Current: Phase II report 2012, p. iv-vii. U.S. NOAA National Marine Fisheries Service.     View Document Levin, Phillip S., Brian K. Wells, and Mindi B. Sheer (eds.). 2013. Integrated ecosystem assessment of the California Current: Phase II report 2012. U.S. NOAA National Marine Fisheries Service. 958 p.     View Document Lovewell, Mark A., Isaac C. Kaplan, Yvonne deReynier, Mindi B. Sheer, Ruth Howell, Lisa Wooninck, Joshua Lindsay, Phillip S. Levin, and Brian K. Wells. 2013. Developing the capacity to assess policy priorities - Engagement with stakeholders and managers. In: Phillip S. Levin, Brian K. Wells, and Mindi B. Sheer (eds.), Integrated ecosystem assessment of the California Current: Phase II report 2012, p. 1-12. U.S. NOAA National Marine Fisheries Service.       Matkin, Craig, and John Durban. 2013. Gray whale killers. Special issue: Gray whale, from devilfish to gentle giants. Whalewatcher 42(1):17-20.     View Document McClatchie, Sam, Richard D. Brodeur, John C. Field, Ed Weber, Andrew R. Thompson, Robert L. Emmett, Paul R. Crone, Kevin T. Hill, Caren Barcelo, and Brian K. Wells. 2013. Coastal pelagics and forage fishes. In: Phillip S. Levin, Brian K. Wells, and Mindi B. Sheer (eds.), Integrated ecosystem assessment of the California Current: Phase II report 2012, p. 374-399. U.S. NOAA National Marine Fisheries Service.       Noren, Dawn P., Suzanne M. Budge, Sara J. Iverson, Michael E. Goebel, Daniel P. Costa, and Terrie M. Williams. 2013. Characterization of blubber fatty acid signatures in northern elephant seals (Mirounga angustirostris) over the postweaning fast. Journal of Comparative Physiology B 183(8):1065-1074.       Perryman, Wayne L., and David W. Weller. 2013. Impacts of climate change on the eastern North Pacific population of gray whales. Special issue: Gray whale, from devilfish to gentle giants. Whalewatcher 42(1):14-16.       Pitman, Robert. 2013. Marine mammal species of India, by E. Vivekanandan and R. Jeyabaskaran [book review]. Marine Mammal Science 29(4):777-779.     View Document Redfern, Jessica V., Lisa T. Ballance, Jay P. Barlow, Susan J. Chivers, M. Bradley Hanson, Elliot L. Hazen, Isaac D. Schroeder, Jeff L. Laake, Mark S. Lowry, Sharon R. Melin, Jeffrey E. Moore, Dawn P. Noren, Wayne L. Perryman, Barbara L. Taylor, David W. Weller, and Brian K. Wells. 2013. Marine mammals - Indicators and status. In: Phillip S. Levin, Brian K. Wells, and Mindi B. Sheer (eds.), Integrated ecosystem assessment of the California Current: Phase II report 2012, p. 339-373. U.S. NOAA National Marine Fisheries Service.     View Document Thomson, Cynthia. 2013. Appendix MS7: Commercial fishing economics technical report for the Secretarial Determination on whether to remove four dams on the Klamath River in California and Oregon. In: Phillip S. Levin, Brian K. Wells, and Mindi B. Sheer (eds.), Integrated ecosystem assessment of the California Current: Phase II report 2012, p. 902-958. U.S. NOAA National Marine Fisheries Service.     View Document Wainwright, Thomas C., Thomas H. Williams, Kurt L. Fresh, and Brian K. Wells. 2013. Chinook and coho salmon. In: Phillip S. Levin, Brian K. Wells, and Mindi B. Sheer (eds.), Integrated ecosystem assessment of the California Current: Phase II report 2012, p. 244-294. U.S. NOAA National Marine Fisheries Service.       Weller, David W., Alexander M. Burdin, and Robert L. Brownell Jr. 2013. A gray area: On the matter of gray whales in the western North Pacific. Special issue: Gray whale, from devilfish to gentle giants. Whalewatcher 42(1):29-33.       Zarate, Patricia, Karen A. Bjorndal, Macarena Parra, Peter H. Dutton, Jeffrey A. Seminoff, and Alan B. Bolten. 2013. Hatching and emergence success in green turtle Chelonia mydas nests in the Galapagos Islands. Aquatic Biology 19(3):217-229.      
2014
  McClatchie, Sam. 2014. Regional fisheries oceanography of the California Current System: The CalCOFI program. Springer (235 p.).      
2013
  Avens, Larisa, Lisa R. Goshe, Mariela Pajuelo, Karen A. Bjorndal, Bradley D. MacDonald, Garrett E. Lemons, Alan B. Bolten, Jeffrey A. Seminoff. 2013. Complementary skeletochronology and stable isotope analyses offer new insight into juvenile loggerhead sea turtle oceanic state duration and growth dynamics. Marine Ecology Progress Series 491:235-251.       Busch, D. Shallin, David A. Boughton, Thomas Cooney, Peter Lawson, Steven T. Lindley, Michelle McClure, Mary H. Ruckelshaus, Norma Jean Sands, Brian C. Spence, Thomas C. Wainwright, Thomas H. Williams, and Paul McElhany. 2013. A practical comparison of viability models used for management of endangered and threatened anadromous Pacific salmonids. North American Journal of Fisheries Management 33(6):1125-1141.       Field, John C., Carl Elliger, Ken Baltz, Graham E. Gillespie, William F. Gilly, R.I. Ruiz-Cooley, Devon Pearse, Julia S. Stewart, William Matsubu, and William A. Walker. 2013. Foraging ecology and movement patterns of jumbo squid (Dosidicus gigas) in the California Current system. Deep Sea Research II 95:37-51.       Frechette, Danielle, Alison L. Collins, James T. Harvey, Sean A. Hayes, David D. Huff, Andrew W. Jones, Nicolas A. Retford, Alina E. Langford, Jonathan W. Moore, Ann-Marie K. Osterback, William H. Satterthwaite, and Scott A. Shaffer. 2013. A bioenergetics approach to assessing potential impacts of avian predation on juvenile steelhead during freshwater rearing. North American Journal of Fisheries Management 33(5):1024-1038.       Kaplan, Isaac C., Christopher J. Brown, Elizabeth A. Fulton, Iris A. Gray, John C. Field, and Anthony D.M. Smith. 2013. Impacts of depleting forage species in the California Current. Environmental Conservation 40(4):380-393.     View Document Kinzey, D., G. Watters, and C.S. Reiss. 2013. Effects of recruitment variability and natural mortality on generalised yield model projections and the CCAMLR decisions rules for Antarctic krill. CCAMLR Science 20:81-96.       Klimley, A. Peter, R. Bruce MacFarlane, Phillip T. Sandstrom, and Stephen T. Lindley. 2013. A summary of the use of electronic tagging to provide insights into salmon migration and survival. Environmental Biology of Fishes 96(2-3):419-428.       Maxwell, Sara M., Elliott L. Hazen, Steven J. Bograd, Benjamin S. Halpern, Greg A. Breed, Barry Nickel, Nicole M. Teutschel, Larry B. Crowder, Scott Benson, Peter H. Dutton, Helen Bailey, Michelle A. Kappes, Carey E. Kuhn, Michael J. Weise, Bruce Mate, Scott A. Shaffer, Jason L. Hassrick, Robert W. Henry, Ladd Irvine, Birgitte I. McDonald, Patrick W. Robinson, Barbara A. Block, and Daniel P. Costa. 2013. Cumulative human impacts on marine predators. Nature Communications 4: article 2688 (9 p.).     View Document Osterback, Ann-Marie K., Danielle M. Frechette, Andrew O. Shelton, Sean A. Hayes, Morgan H. Bond, Scott A. Shaffer, and Jonathan W. Moore. 2013. High predation on small populations: avian predation on imperiled salmonids. Ecosphere 4(9): article 116 (21 p.).       Parsons, Kim M., John W. Durban, Alexander M. Burdin, Vladimir N. Burkanov, Robert L. Pitman, Jay Barlow, Lance G. Barrett-Lennard, Richard G. LeDuc, Kelly M. Robertson, Craig O. Matkin, and Paul R. Wade. 2013. Geographic patterns of genetic differentiation among killer whales in the northern North Pacific. Journal of Heredity 104(6):737-754.       Perry, Russell W., Patricia L. Brandes, Jon R. Burau, A. Peter Klimley, Bruce MacFarlane, Cyril Michel, and John R. Skalski. 2013. Sensitivity of survival to migration routes used by juvenile Chinook salmon to negotiate the Sacramento-San Joaquin River Delta. Environmental Biology of Fishes 96(2-3):381-392.       Pike, Andrew, Eric Danner, David Boughton, Forrest Melton, Rama Nemani, Balaji Rajagopalan, and Steve Lindley. 2013. Forecasting river temperatures in real time using a stochastic dynamics approach. Water Resources Research 49(9):5168-5182.       Rankin, Shannon, Frederick Archer, and Jay Barlow. 2013. Vocal activity of tropical dolphins is inhibited by the presence of killer whales, Orcinus orca. Marine Mammal Science 29(4):679-690.       Sandstrom, P.T., A.J. Ammann, C. Michel, G. Singer, E.D. Chapman, S. Lindley, R.B. MacFarlane, and A.P. Klimley. 2013. Growth, survival, and tag retention of steelhead trout (Oncorhynchus mykiss) and its application to survival estimates. Environmental Biology of Fishes 96(2-3):145-164.       Sandstrom, Philip T., R. Bruce MacFarlane, Steven T. Lindley, and A. Peter Klimley. 2013. An introduction to the use of electronic tagging to provide insights into salmon migration and survival. Environmental Biology of Fishes 96(2-3):131-133.       Stewart, Julia S., John C. Field, Unai Markaida, and William F. Gilly. 2013. Behavioral ecology of jumbo squid (Dosidicus gigas) in relation to oxygen minimum zones. Deep Sea Research II 95:197-208.       Stewart, Julia S., William F. Gilly, John C. Field, and John C. Payne. 2013. Onshore–offshore movement of jumbo squid (Dosidicus gigas) on the continental shelf. Deep Sea Research II 95:193-196.      
2014
  Collier, Trevor C., Aaron Mamula, and John Ruggiero. 2014. Estimation of multi-output production functions in commercial fisheries. Omega 42(1):157-165.      
2013
  Abadia-Cardoso, Alicia, Eric C. Anderson, Devon E. Pearse and John Carlos Garza. 2013. Large-scale parentage analysis reveals reproductive patterns and heritability of spawn timing in a hatchery population of steelhead (Oncorhynchus mykiss). Molecular Ecology 22(18):4733-4746.       Barlow, Jay, Peter L. Tyack, Mark P. Johnson, Robin W. Baird, Gregory S. Schorr, Russel D. Andrews, and Natacha Aguilar de Soto. 2013. Trackline and point detection probabilities for acoustic surveys of Cuvier's and Blainville's beaked whales. Journal of the Acoustical Society of America 134(3):2486-2496.       Baumann-Pickering, Simone, Mark A. McDonald, Anne E. Simonis, Alba Solsona Berga, Karlina P.B. Merkens, Erin M. Oleson, Marie A. Roch, Sean M. Wiggins, Shannon Rankin, Tina M. Yack, and John A. Hildebrand. 2013. Species-specific beaked whale echolocation signals. Journal of the Acoustical Society of America 134(3):2293-2301.       Blanco, Gabriela S., Stephen J. Morreale, Jeffrey A. Seminoff, Frank V. Paladino, Rotney Piedra, and James R. Spotila. 2013. Movements and diving behavior of internesting green turtles along Pacific Costa Rica. Integrative Zoology 8(3):293-306.       Foote, Andrew D., Phillip A. Morin, Robert L. Pitman, Maria C. Avila-Arcos, John W. Durban, Anton van Helden, Mikkel-Holger S. Sinding, and M. Thomas P. Gilbert. 2013. Mitogenomic insights into a recently described and rarely observed killer whale morphotype. Polar Biology 36(10):1519-1523.       Jew, Corey J., Nicholas C. Wegner, Yuzo Yanagitsuru, Martin Tresguerres, and Jeffrey B. Graham. 2013. Atmospheric oxygen levels affect mudskipper terrestrial performance: implications for early tetrapods. Integrative and Comparative Biology 53(2):248-257.       Keledjian, Amanda J., and Sarah Mesnick. 2013. The impacts of El Nino conditions on California sea lion (Zalophus californianus) fisheries interactions: predicting spatial and temporal hotspots along the California coast. Aquatic Mammals 39(3):221-232.       Kinziger, Andrew P., Michael Hellmair, David G. Hankin, and John Carlos Garza. 2013. Contemporary population structure in Klamath River basin Chinook Salmon revealed by analysis of microsatellite genetic data. Transactions of the American Fisheries Society 142(5):1347-1357.       Norton, Jerrold G., Janet E. Mason, Cindy Bessey, and Samuel F. Herrick. 2013. Physical, biological and economic interconnections in the ecosystems and fisheries off California, 1877-2004. Quaternary International 310:7-19.       Nosal, A.P., D.C. Cartamil, J.W. Long, M. Luhrmann, N.C. Wegner, and J.B. Graham. 2013. Demography and movement patterns of leopard sharks (Triakis semifasciata) aggregating near the head of a submarine canyon along the open coast of southern California, USA. Environmental Biology of Fishes 96(7):865-878.     View Document Ostberg, Carl O., Lorenz Hauser, Victoria L. Pritchard, John C. Garza, and Kerry A. Naish. 2013. Chromosome rearrangements, recombination suppression, and limited segregation distortion in hybrids between Yellowstone cutthroat trout (Oncorhynchus clarkii bouvieri) and rainbow trout (O. mykiss). BMC Genomics 14: article 570.       Palacios, Daniel M., Elliott L. Hazen, Isaac D. Schroeder, and Steven J. Bograd. 2013. Modeling the temperature-nitrate relationship in the coastal upwelling domain of the California Current. Journal of Geophysical Research: Oceans 118(7):3223-3239.       Wegner, Nicholas C., Chugey A. Sepulveda, Scott A. Aalbers, and Jeffrey B. Graham. 2013. Structural adaptations for ram ventilation: gill fustions in scombrids and billfishes. Journal of Morphology 274(1):108-120.       Yack, Tina M., Jay Barlow, John Calambokidis, Brandon Southall, and Shannon Coates. 2013. Passive acoustic monitoring using a towed hydrophone array results in identification of a previously unknown beaked whale habitat. Journal of the Acoustical Society of America 134(3):2589-2595.      
2014
  Thayer, Julie A., John C. Field, and William J. Sydeman. 2014. Changes in California Chinook salmon diet over the past 50 years: relevance to the recent population crash. Marine Ecology Progress Series 498:249-261.      
2013
  Ackiss, Amanda S., Shinta Pardede, Eric D. Crandall, Ma. Carmen A. Ablan-Lagman, Ambariyanto, November Romena, Paul H. Barber, and Kent E. Carpenter. 2013. Pronounced genetic structure in a highly mobile coral reef fish, Caesio cuning, in the Coral Triangle. Marine Ecology Progress Series 480:185-197.       Anderson, Kurt E., Lee R. Harrison, Roger M. Nisbet, and Allison Kolpas. 2013. Modeling the influence of flow on invertebrate drift across spatial scales using a 2D hydraulic model and a 1D population model. Ecological Modelling 265(10):207-220.     View Document Archer, Frederick I., Phillip A. Morin, Brittany L. Hancock-Hanser, Kelly M. Robertson, Matthew S. Leslie, Martine Berube, Simone Panigada, and Barbara L. Taylor. 2013. Mitogenomic phylogenetics of fin whales (Balaenoptera physalus spp.): genetic evidence for revision of subspecies. PLoS ONE 8(5): e63396 (10 p.).       Baumann-Pickering, Simone, Tina M. Yack, Jay Barlow, Sean M. Wiggins, and John A. Hildebrand. 2013. Baird's beaked whale echolocation signals. Journal of the Acoustical Society of America 133(6):4321-4331.       Carolina A. Bonin, Michael E. Goebel, Jaume Forcada, Ronald S. Burton, and Joseph I. Hoffman. 2013. Unexpected genetic differentiation between recently recolonized populations of a long-lived and highly vagile marine mammal. Ecology and Evolution 3(11):3701-3712.       Conrad, J. Louise, Elizabeth A. Gilbert-Horvath, and John Carlos Garza. 2013. Genetic and phenotypic effects on reproductive outcomes for captively-reared coho salmon, Oncorhynchus kisutch. Aquaculture 404-405:95-104.     View Document Cope, Jason, E.J. Dick, Alec MacCall, Melissa Monk, Braden Soper, and Chantel Wetzel. 2013. Data-moderate stock assessments for brown, China, copper, sharpchin, stripetail, and yellowtail rockfishes and English and rex soles in 2013. In: June 2013 Briefing Book, agenda item F.5.a, attachment 1. Pacific Fishery Management Council, Portland, Oregon. 282 p.       Curtis, K. Alexandra, and Jeffrey E. Moore. 2013. Calculating reference points for anthropogenic mortality of marine turtles. Aquatic Conservation: Marine and Freshwater Ecosystems 23(3):441-459.       Davison, P.C., D.M. Checkley Jr., J.A. Koslow, and J. Barlow. 2013. Carbon export mediated by mesopelagic fishes in the northeast Pacific Ocean. Progress in Oceanography 116:14-30.       Dutton, Peter H., Suzanne E. Roden, Kelly R. Stewart, Erin LaCasella, Manjula Tiwari, Angela Formia, Joao Carlos Thome, Suzanne R. Livingstone, Scott Eckert, Didiher Chacon-Chaverri, Philippe Rivalan, and Phil Allman. 2013. Population stock structure of leatherback turtles (Dermochelys coriacea) in the Atlantic revealed using mtDNA and microsatellite markers. Conservation Genetics 14(3):625-636.       Elfes, Cristiane T., Suzanne R. Livingstone, Amanda Lane, Vimoksalehi Lukosche, Kate L. Sanders, Anthony J. Courtney, Joey L. Gatus, Michael Guinea, Aaron S. Lobo, David Milton, Arne R. Rasmussen, Mark Read, Mahree-Dee White, Jonnell Sanciangco, Angel Alcala, Harold Heatwole, Daryl R. Karns, Jeffrey A. Seminoff, Harold K. Voris, Kent E. Carpenter, and John C. Murphy. 2013. Fascinating and forgotten: The conservation status of marine elapid snakes. Herpetological Conservation and Biology 8(1):37-52.       Fiedler, Paul C., Jessica V. Redfern, Joel Van Noord, Candice Hall, Robert L. Pitman, and Lisa T. Ballance. 2013. Effects of a tropical cyclone on a pelagic ecosystem from the physical environment to top predators. Marine Ecology Progress Series 484:1-16.       Ford, John K.B., John W. Durban, Graeme M. Ellis, Jared R. Towers, James F. Pilkington, Lance G. Barrett-Lennard, and Russel D. Andrews. 2013. New insights into the northward migration route of gray whales between Vancouver Island, British Columbia, and southeastern Alaska. Marine Mammal Science 29(2):325-337.     View Document Fritz, L., K. Sweeney, D. Johnson, M. Lynn, T. Gelatt, and J. Gilpatrick. 2013. Aerial and ship-based surveys of Steller sea lions (Eumetopias jubatus) conducted in Alaska in June-July 2008 through 2012, and an update on the status and trend of the western distinct population segment in Alaska. U.S. Department of Commerce, NOAA Technical Memorandum NMFS-AFSC-251. 91 p.       Gao, Jin, and Stephan B. Munch. 2013. Genetic and maternal variation in early growth in the Atlantic silverside Menidia menidia. Marine Ecology Progress Series 485:211-222.       Garcia-Reyes, Marisol, William J. Sydeman, Sarah Ann Thompson, Bryan A. Black, Ryan R. Rykaczewski, Julie A. Thayer, and Steven J. Bograd. 2013. Integrated assessment of wind effects on central California's pelagic ecosystem. Ecosystems 16(5):722-735.     View Document Goldbogen, Jeremy A., Brandon L. Southall, Stacy L. DeRuiter, John Calambokidis, Ari S. Friedlaender, Elliott L. Hazen, Erin A. Falcone, Gregory S. Schorr, Annie Douglas, David J. Moretti, Chris Kyburg, Megan F. McKenna, and Peter L. Tyack. 2013. Blue whales respond to simulated mid-frequency military sonar. Proceedings of the Royal Society B 280(1765): article 20130657 (8 p.).     View Document Gove, Jamison M., Gareth J. Williams, Margaret A. McManus, Scott F. Heron, Stuart A. Sandin, Oliver J. Vetter, and David G. Foley. 2013. Quantifying climatological ranges and anomalies for Pacific coral reef ecosystems. PLoS ONE 8(4): e61974 (14 p.).       Hazen, Elliott L., Robert M. Suryan, Jarrod A. Santora, Steven J. Bograd, Yutaka Watanuki, and Rory P. Wilson. 2013. Scales and mechanisms of marine hotspot formation. Marine Ecology Progress Series 487:177-183.       Hoving, Henk-Jan T., William F. Gilly, Unai Markaida, Kelly J. Benoit-Bird, Zachary W.-Brown, Patrick Daniel, John C. Field, Liz Parassenti, Bilin Liu, and Bernardita Campos. 2013. Extreme plasticity in life-history strategy allows a migratory predator (jumbo squid) to cope with a changing climate. Global Change Biology 19(7):2089-2103.       Hunt, Kathleen E. Hunt, Michael J. Moore, Rosalind M. Rolland, Nicholas M. Kellar, Alisa J. Hall, Joanna Kershaw, Stephen A. Raverty, Cristina E. Davis, Laura C. Yeates, Deborah A. Fauquier, Teresa K. Rowles, and Scott D. Kraus. 2013. Overcoming the challenges of studying conservation physiology in large whales: a review of available methods. Conservation Physiology 1(1): doi: 10.1093/conphys/cot006 (24 p.).       Ishimura, Gakushi, Sam Herrick, and Ussif Rashid Sumaila. 2013. Fishing games under climate variability: transboundary management of Pacific sardine in the California Current System. Environmental Economics and Policy Studies 15(2):189-209.       Jepson, Paul D., Michelle Barbieri, Susan G. Barco, Yara Bernaldo de Quiros, Andrea Bogomolni, Kerri Danil, and Teri Rowles. 2013. Peracute underwater entrapment of pinnipeds and cetaceans. In theme section: Michael J. Moore et al. (eds.), Criteria and case definitions for serious injury and death of pinnipeds and cetaceans caused by anthropogenic trauma. Diseases of Aquatic Organisms 103(3):229-264.     View Document Jepson, Paul D., Robert Deaville, Karina Acevedo-Whitehouse, James Barnett, Andrew Brownlow, Robert L. Brownell Jr., Frances C. Clare, Nick Davison, Robin J. Law, Jan Loveridge, Shaheed K. Macgregor, Steven Morris, Sinead Murphy, Rod Penrose, Matthew W. Perkins, Eunice Pinn, Henrike Seibel, Ursula Siebert, Eve Sierra, Victor Simpson, Mark L. Tasker, Nick Tregenza, Andrew A. Cunningham, and Antonio Fernandez. 2013. What caused the UK's largest common dolphin (Delphinus delphis) mass stranding event? PLoS ONE 8(4): e60953 (18 p.).     View Document Klamath River Technical Team. 2013. Ocean abundance projections and prospective harvest levels for Klamath River fall Chinook, 2013 season. Klamath River Technical Team. 31 p.     View Document Klamath River Technical Team. 2013. Klamath River fall Chinook salmon age-specific escapement, river harvest, and run size estimates, 2012 run. Klamath River Technical Team. 18 p.       La Mesa, Mario, Barbara Catalano, and Christopher D. Jones. 2013. Early life history of the ocellated icefish, Chionodraco rastrospinosus, off the Antarctic Peninsula. Antarctic Science 25(3):373-380.       La Mesa, Mario, Barbara Catalano, Philippe Koubbi, and Christopher D. Jones. 2013. Early ontogeny of the mackerel icefish, Champsocephalus gunnari, in the southern Scotia Arc. Polar Biology 36(6):797-805.       Lindegren, Martin, David M. Checkley Jr., Tristan Rouyer, Alec De. MacCall, and Nils Chr. Stenseth. 2013. Climate, fishing, and fluctuations of sardine and anchovy in the California Current. Proceedings of the National Academy of Sciences of the United States of America 110(33):13672-13677.     View Document Mamula, Aaron, and John Walden (eds.). 2013. Proceedings of the National Marine Fisheries Service Productivity Workshop (Santa Cruz, CA, June 11-12, 2012). U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-503, 262 p.       Mangel, Marc, Alec D. MacCall, Jon Brodziak, E.J. Dick, Robyn E. Forrest, Roxanna Pourzand, and Stephen Ralston. 2013. A perspective on steepness, reference points, and stock assessment. Canadian Journal of Fisheries and Aquatic Sciences 70(6):930-940.       Moore, Jeffrey E. 2013. Management reference points to account for direct and indirect impacts of fishing on marine mammals. Marine Mammal Science 29(3):446-473.       Moore, Katie, Frances Gulland, Michelle Berman, Elsa Cabrera, Kerri Danil, and Lanni Hall. 2013. Gunshot injuries of pinnipeds and cetaceans. In theme section: Michael J. Moore et al. (eds.), Criteria and case definitions for serious injury and death of pinnipeds and cetaceans caused by anthropogenic trauma. Diseases of Aquatic Organisms 103(3):229-264.     View Document Moyle, Peter B., Joseph D. Kiernan, Patrick K. Crain, and Rebecca M. Quinones. 2013. Climate change vulnerability of native and alien freshwater fishes of California: a systematic assessment approach. PLoS ONE 8(5):e63883 (12 p.).     View Document Myers, Kate, and Nate Mantua. 2013. Climate change and ocean ecology of northwest steelhead. The Osprey 75:1, 4-7.     View Document National Marine Fisheries Service. 2013. Groundfish Essential Fish Habitat synthesis: A report to the Pacific Fishery Management Council. NOAA National Marine Fisheries Service, Northwest Fisheries Science Center, Seattle, Washington. 485 p.     View Document Nelson, Troy C., Phaedra Doukakis, Steven T. Lindley, Andrea D. Schreier, Joseph E. Hightower, Larry R. Hildebrand, Rebecca E. Whitlock, and Molly A.H. Webb. 2013. Research tools to investigate movements, migrations, and life history of sturgeons (Acipenseridae), with an emphasis on marine-oriented populations. PLoS ONE 8(8):e71552 (22 p.).     View Document Okuyama, Junichi, Kana Nakajima, Takuji Noda, Satoko Kimura, Hiroko Kamihata, Masato Kobayashi, Nobuaki Arai, Shiro Kagawa, Yuuki Kawabata, and Hideaki Yamada. 2013. Ethogram of immature greent turtles: Behavioral strategies for somatic growth in large marine herbivores. PLoS ONE 8(6):e65783 (12 p.).       Olsen, Lasse Mork, Murat Van Ardelan, Christopher D. Hewes, Osmund Holm-Hansen, Christian Reiss, Nihayet Bizsel, Egil Sakshaug, and Olav Vadstein. 2013. Microbial biogeography during austral summer 2007 in the surface waters around the South Shetland Islands, Antarctica. Aquatic Microbial Ecology 70(2):131-140.     View Document Pacific Fishery Management Council (Salmon Technical Team). 2013. Preseason report II: Proposed alternatives and environmental assessment Part 2 for 2013 ocean salmon fishery regulations. Regulation Identifier Number 0648-XC438. Pacific Fishery Management Council, Portland, Oregon. 67 p.     View Document Pacific Fishery Management Council (Salmon Technical Team). 2013. Review of 2012 ocean salmon fisheries: Stock assessment and fishery evaluation document for the Pacific Coast Salmon Fishery Management Plan. Pacific Fishery Management Council, Portland, Oregon. 363 p.     View Document Pacific Fishery Management Council (Salmon Technical Team). 2013. Preseason report I: Stock abundance analysis and environmental assessment Part 1 for 2013 ocean salmon fishery regulations. Regulation Identifier Number 0648-XC438. Pacific Fishery Management Council, Portland, Oregon. 131 p.     View Document Pacific Fishery Management Council (Salmon Technical Team). 2013. Preseason report III: Council adopted management measures and environmental assessment Part 3 for 2013 ocean salmon fishery regulations. Regulation Identifier Number 0648-XC438. Pacific Fishery Management Council, Portland, Oregon. 44 p.       Pitman, Robert. 2013. Clipperton Island. In: Robert Warren Howarth and Jacqueline E. Mohan (eds.), Biomes and ecosystems, vol. 2, p. 471-473. Salem Press, Ipswich, Massachusetts.       Pritchard, Victoria L., and John Carlos Garza. 2013. Discovery and characterization of novel genetic markers for coastal cutthroat trout (Oncorhynchus clarkii clarkii). Conservation Genetics Resources 5(3):611-618.       Ralston, S., K.M. Sakuma, and J.C. Field. 2013. Interannual variation in pelagic juvenile rockfish (Sebastes spp.) abundance -- going with the flow. Fisheries Oceanography 22(4):288-308.       Regan, Tracey J., Barbara L. Taylor, Grant G. Thompson, Jean Fitts Cochrane, Katherine Ralls, Michael C. Runge, and Richard Merrick. 2013. Testing decision rules for categorizing species' extinction risk to help develop quantitative listing criteria for the U.S. Endangered Species Act. Conservation Biology 27(4):821-831.       Roden, Suzanne E., Phillip A. Morin, Amy Frey, George H. Balazs, Patricia Zarate, I-Jiumm Cheng, and Peter H. Dutton. 2013. Green turtle population structure in the Pacific: new insights from single nucleotide polymorphisms and microsatellites. Endangered Species Research 20(3):227-234.       Santora, Jarrod A. 2013. Dynamic intra-seasonal habitat use by Antarctic fur seals suggests migratory hotspots near the Antarctic Peninsula. Marine Biology 160(6):1383-1393.       Satterthwaite, William H., Michael S. Mohr, Michael R. O'Farrell, and Brian K. Wells. 2013. A comparison of temporal patterns in the ocean spatial distribution of California's Central Valley Chinook salmon runs. Canadian Journal of Fisheries and Aquatic Sciences 70(4):574-584.       Schwarz, Lisa K., Michael E. Goebel, Daniel P. Costa, and A. Marm Kilpatrick. 2013. Top-down and bottom-up influences on demographic rates of Antarctic fur seals Arctocephalus gazella. Journal of Animal Ecology 82(4):903-911.       Shelton, Andrew O., William H. Satterthwaite, Michael P. Beakes, Stephen B. Munch, Susan M. Sogard, and Marc Mangel. 2013. Separating intrinsic and environmental contributions to growth and their population consequences. American Naturalist 181(6):799-814.       Shelton, Andrew Olaf, Douglas Kinzey, Christian Reiss, Stephan Munch, George Watters, and Marc Mangel. 2013. Among-year variation in growth of Antarctic krill Euphausia superba based on length-frequency data. Marine Ecology Progress Series 481:53-67.       Siegel, Volker, Christian S. Reiss, Kimberly S. Dietrich, Matilda Haraldsson, and Gerhard Rohardt. 2013. Distribution and abundance of Antarctic krill (Euphausia superba) along the Antarctic Peninsula. Deep-Sea Research I 77:63-74.       Steele, Craig A., Eric C. Anderson, Michael W. Ackerman, Maureen A. Hess, Nathan R. Campbell, Shawn R. Narum, and Matthew R. Campbell. 2013. A validation of parentage-based tagging using hatchery steelhead in the Snake River basin. Canadian Journal of Fisheries and Aquatic Sciences 70(7):1046-1054.       Stewart, Kelly R., Michael C. James, Suzanne Roden, and Peter H. Dutton. 2013. Assignment tests, telemetry and tag-recapture data converge to identify natal origins of leatherback turtles foraging in Atlantic Canadian waters. Journal of Animal Ecology 82(4):791-803.       Sugeno, Masatoshi, and Stephan B. Munch. 2013. A semiparametric Bayesian approach to estimating maximum reproductive rates at low population sizes. Ecological Applications 23(4):699-709.       Sugeno, Masatoshi, and Stephan B. Munch. 2013. A semiparametric Bayesian method for detecting Allee effects. Ecology 94(5):1196-1204.       Thompson, Andrew R., Thomas C. Adam, Kristin M. Hultgren, and Christine E. Thacker. 2013. Ecology and evolution affect network structure in an intimate marine mutualism. American Naturalist 182(2):E58-E72.       Topalov, Katarina, Arndt Schimmelmann, P. David Polly, Peter E. Sauer, and Mark Lowry. 2013. Environmental, trophic, and ecological factors influencing bone collagen δ2H. Geochimica et Cosmochimica Acta 111:88-104.     View Document Trego, Marisa L., Nicholas M. Kellar, and Kerri Danil. 2013. Validation of blubber progesterone concentrations for pregnancy determination in three dolphin species and a porpoise. PLoS ONE 8(7): e69709 (9 p.).       Trivelpiece, W.Z., and S. Trivelpiece. 2013. The chinstrap penguin. In: Pablo Garcia Borboroglu and P. Dee Boersma (eds.), Penguins: natural history and conservation. Universithy of Washington Press.       Van Noord, J.E., E.A. Lewallen, and R.L. Pitman. 2013. Flyingfish feeding ecology in the eastern Pacific: prey partitioning within a speciose epipelagic community. Journal of Fish Biology 83(2):326-342.       Van Noord, Joel E., Robert J. Olson, Jessica V. Redfern, and Ronald S. Kaufmann. 2013. Diet and prey selectivity in three surface-migrating myctophids in the eastern tropical Pacific. Ichthyological Research 60(3):287-290.       Venerus, Leonardo A., Javier E. Ciancio, Carla Riva-Rossi, Elizabeth A. Gilbert-Horvath, Atila E. Gosztonyi, and John Carlos Garza. 2013. Genetic structure and different color morphotypes suggest the occurrence and bathymetric segregation of two incipient species of Sebastes off Argentina. Naturwissenschaften 100(7):645-658.     View Document Wakefield, W. Waldo, Mary M. Yoklavich, Chris G. Romsos, Joseph J. Bizzarro, Curt E. Whitmire, and Marlene Bellman. 2013. Data to support a review of Essential Fish Habitat for Pacific Coast groundfish [abstract]. In: George W. Boehlert et al. (eds.), Oregon Marine Renewable Energy Environmental Science Conference proceedings, p. 119-120. U.S. Department of the Interior, Bureau of Ocean Energy Management, Pacific Region, OCS Study BOEM 2013-0113.       Watters, G.M., S.L. Hill, J.T. Hinke, J. Matthews, and K. Reid. 2013. Decision-making for ecosystem-based management: evaluating options for a krill fishery with an ecosystem dynamics model. Ecological Applications 23(4):710-725.       Whitney, Frank A., Steven J. Bograd, and Tsuneo Ono. 2013. Nutrient enrichment of the subarctic Pacific Ocean pycnocline. Geophysical Research Letters 40(10):2200-2205.     View Document Williams, Thomas H., John Carlos Garza, Nicholas J. Hetrick, Steven T. Lindley, Michael S. Mohr, James M. Myers, Michael R. O'Farrell, Rebecca M. Quinones, and David J. Teel. 2013. Upper Klamath and Trinity River Chinook salmon Biological Review Team report. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-502, 47 p.       Winship, Arliss J., Michael R. O'Farrell, and Michael S. Mohr. 2013. Management strategy evaluation applied to the conservation of an endangered population subject to incidental take. Biological Conservation 158:155-166.       Wolff, Francois-Charles, Dale Squires, and Patrice Guillotreau. 2013. The firm's management in production: management, firm, and time effects in an Indian Ocean tuna fishery. American Journal of Agricultural Economics 95(3):547-567.       Woodson, Lindsay E., Brian K. Wells, Peter K. Weber, R. Bruce MacFarlane, George E. Whitman, and Rachel C. Johnson. 2013. Size, growth, and origin-dependent mortality of juvenile Chinook salmon Oncorhynchus tshawytscha during early ocean residence. Marine Ecology Progress Series 487:163-175.     View Document Yoklavich, Mary, Tom Laidig, Andrew Taylor, Diana Watters, Lisa Krigsman, and Milton Love. 2013. A characterization of the Christmas tree black coral (Antipathes dendrochristos) community on three seamounts in the Southern California Bight from a survey using a manned submersible. Report to NOAA Deep-Sea Coral Research and Technology Program, Silver Spring, Maryland. 82 p.       Zabin, Chela J., Eric M. Danner, Erin P. Baumgartner, David Spafford, Kathy Ann Miller, and John S. Pearse. 2013. A comparison of intertidal species richness and composition between Central California and Oahu, Hawaii. Marine Ecology 34(2):131-156.      
2014
  Bonin, Carolina A., Michael E. Goebel, Joseph I. Hoffman, and Ronald S. Burton. 2014. High male reproductive success in a low-density Antarctic fur seal (Arctocephalus gazella) breeding colony. Behavioral Ecology and Sociobiology 68(4):597-604.      
2013
  Kellar, Nicholas M., Jennifer Keliher, Marisa L. Trego, Krista N. Catelani, Cyd Hanns, J.C. 'Craig' George, and Cheryl Rosa. 2013. Variation of bowhead whale progesterone concentrations across demographic groups and sample matrices. Endangered Species Research 22(1):61-72.      
2014
View Document Bordignon, Guido, Stephanie Sexton, and Amy Van Cise. 2014. Phytoplankton studies in the South Shetland Islands. In: Jennifer G. Walsh (ed.), AMLR 2010-2011 field season report, p. 8-13. U.S. Department of Commerce, NOAA Technical Memorandum NMFS-SWFSC-524.     View Document Cossio, Anthony M., and Christian Reiss. 2014. Bioacoustic survey. In: Jennifer G. Walsh (ed.), AMLR 2010-2011 field season report, p. 14-17. U.S. Department of Commerce, NOAA Technical Memorandum NMFS-SWFSC-524.     View Document Dietrich, Kimberly, Cassandra Brooks, Ian Bystrom, Ryan Driscoll, Nissa Ferm, Jefferson Hinke, Michael Janssen, Darci Lombard, Andrea Pesce, Suzanne Romain, Lars Thoresen, and Amy Van Cise. 2014. Distribution and catch rates of zooplankton around the South Shetland Islands, Antarctica. In: Jennifer G. Walsh (ed.), AMLR 2010-2011 field season report, p. 18-27. U.S. Department of Commerce, NOAA Technical Memorandum NMFS-SWFSC-524.     View Document Goebel, Michael E., Nicola Pussini, Ray Buchheit, Kevin Pietrzak, Douglas J. Krause, Amy M. Van Cise, and Jennifer G. Walsh. 2014. Pinniped research at Cape Shirreff, Livingston Island, Antarctica. In: Jennifer G. Walsh (ed.), AMLR 2010-2011 field season report, p. 50-57. U.S. Department of Commerce, NOAA Technical Memorandum NMFS-SWFSC-524.       Graham, Jeffrey B., Nicholas C. Wegner, Lauren A. Miller, Corey J. Jew, N. Chin Lai, Rachel M. Berquist, Lawrence R. Frank, and John A. Long. 2014. Spiracular air breathing in polypterid fishes and its implications for aerial respiration in stem tetrapods. Nature Communications 5: article 3022 (6 p.).     View Document Jones, Christopher, Philippe Koubbi, Barbara Catalano, Kimberly Dietrich, and Nissa Ferm. 2014. Mesopelagic and larval fish survey. In: Jennifer G. Walsh (ed.), AMLR 2010-2011 field season report, p. 28-39. U.S. Department of Commerce, NOAA Technical Memorandum NMFS-SWFSC-524.       Lowry, Mark S., Richard Condit, Brian Hatfield, Sarah G. Allen, Ryan Berger, Patricia A. Morris, Burney J. Le Boeuf, and J. Reiter. 2014. Abundance, distribution, and population growth of the northern elephant seal (Mirounga angustirostris) in the United States from 1991 to 2010. Aquatic Mammals 40(1):20-31.     View Document Mudge, McKenzie L., Allyson L. Larned, Jefferson T. Hinke, and Wayne Z. Trivelpiece. 2014. Seabird research at Cape Shirreff, Livingston Island, Antarctica. In: Jennifer G. Walsh (ed.), AMLR 2010-2011 field season report, p. 46-49. U.S. Department of Commerce, NOAA Technical Memorandum NMFS-SWFSC-524.     View Document Needham, Derek, and Andre Hoek. 2014. Physical oceanographic measurements and underway environmental observations. In: Jennifer G. Walsh (ed.), AMLR 2010-2011 field season report, p. 1-7. U.S. Department of Commerce, NOAA Technical Memorandum NMFS-SWFSC-524.     View Document Perryman, Wayne, Michael E. Goebel, Nancy Ash, Don LeRoi, and Steve Gardner. 2014. Small unmanned aerial systems for estimating abundance of krill-dependent predators: a feasibility study with preliminary results. In: Jennifer G. Walsh (ed.), AMLR 2010-2011 field season report, p. 64-72. U.S. Department of Commerce, NOAA Technical Memorandum NMFS-SWFSC-524.     View Document Santora, Jarrod A., and Michael P. Force. 2014. Distribution, abundance, and behavior of seabirds and mammals at sea. In: Jennifer G. Walsh (ed.), AMLR 2010-2011 field season report, p. 58-63. U.S. Department of Commerce, NOAA Technical Memorandum NMFS-SWFSC-524.     View Document Trivelpiece, Susan G., Alexis Will, Kristen Boysen, Penelope Chilton, and Wayne Z. Trivelpiece. 2014. Seabird research at Admiralty Bay, King George Island, Antarctica. In: Jennifer G. Walsh (ed.), AMLR 2010-2011 field season report, p. 40-45. U.S. Department of Commerce, NOAA Technical Memorandum NMFS-SWFSC-524.      
2013
View Document Durban, J., D. Weller, A. Lang, and W. Perryman. 2013. Estimating gray whale abundance from shore-based counts using a multilevel Bayesian model. Paper SC/65a/BRG02 presented to the International Whaling Commission, Scientific Committee (SC65a meeting, Jeju Island, Republic of Korea, 2013). 9 p.     View Document Lewand, Kevin O., John R. Hyde, Vince P. Buonaccorsi, and Robert N. Lea. 2013. Orange coloration in a black-and-yellow rockfish (Sebastes chrysomelas) from central California. California Fish and Game 99(4):237-239.      
2014
View Document Bradford, Amanda L., Karin A. Forney, Erin M. Oleson, and Jay Barlow. 2014. Accounting for subgroup structure in line-transect abundance estimates of false killer whales (Pseudorca crassidens) in Hawaiian waters. PLoS ONE 9(2):e90464 (11 p.).     View Document Carruthers, Thomas R., Andre E. Punt, Carl J. Walters, Alec MacCall, Murdoch K. McAllister, Edward J. Dick, and Jason Cope. 2014. Evaluating methods for setting catch limits in data-limited fisheries. Fisheries Research 153:48-68.       Speir, Cameron, Caroline Pomeroy, and Jon G. Sutinen. 2014. Port level fishing dynamics: assessing changes in the distribution of fishing activity over time. Marine Policy 46:171-191.       Thorson, James T., Kotaro Ono, and Stephan B. Munch. 2014. A Bayesian approach to identifying and compensating for model misspecification in population models. Ecology 95(2):329-341.      
2013
  Perretti, Charles T., George Sugihara, and Stephan B. Munch. 2013. Nonparametric forecasting outperforms parametric methods for a simulated multispecies system. Ecology 94(4):794-800.      
2014
  Kashef, Neosha S., Susan M. Sogard, Rebecca Fisher, and John L. Largier. 2014. Ontogeny of critical swimming speeds for larval and pelagic juvenile rockfishes (Sebastes spp., family Scorpaenidae). Marine Ecology Progress Series 500:231-243.       Nosal, A.P., A. Caillat, E.K. Kisfaludy, M.A. Royer, and N.C. Wegner. 2014. Aggregation behavior and seasonal philopatry in male and female leopard sharks Triakis semifasciata along the open coast of southern California, USA. Marine Ecology Progress Series 499:157-175.      
2013
View Document Carretta, James V., Erin Oleson, David W. Weller, Aimee R. Lang, Karin A. Forney, Jason Baker, Brad Hanson, Karen Martien, Marcia M. Muto, Mark S. Lowry, Jay Barlow, Deanna Lynch, Lilian Carswell, Robert L. Brownell Jr., David K. Matilla, and Marie C. Hill. 2013. U.S. Pacific marine mammal stock assessments: 2012. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-504, 378 p.       Deyle, Ethan R., Michael Fogarty, Chih-hao Hsieh, Les Kaufman, Alec D. MacCall, Stephan B. Munch, Charles T. Perretti, Hao Ye, and George Sugihara. 2013. Predicting climate effects on Pacific sardine. Proceedings of the National Academy of Sciences of the United States of America 110(16):6430-6435.       Garwood, Rebecca S., Timothy J. Mulligan, and Eric P. Bjorkstedt. 2013. Ichthyological assemblage and variation in a Northern California Zostera marine eelgrass bed. Northwestern Naturalist 94(1):35-50.     View Document Lo, Nancy C.H., Beverly J. Macewicz, and David A. Griffith. 2013. Spawning biomass of Pacific sardine (Sardinops sagax) off U.S. in 2012. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-505, 39 p.     View Document Moore, Jeffrey E., and David W. Weller. 2013. Probability of taking a western North Pacific gray whale during the proposed Makah hunt. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-506, 13 p.       Santora, Jarrod A., William J. Sydeman, Monique Messie, Fei Chai, Yi Chao, Sarah Ann Thompson, Brian K. Wells, and Francisco P. Chavez. 2013. Triple check: Observations verify structural realism of an ocean ecosystem model. Geophysical Research Letters 40(7):1367-1372.       Schroeder, Isaac D., Bryan A. Black, William J. Sydeman, Steven J. Bograd, Elliott L. Hazen, Jarrod A. Santora, and Brian K. Wells. 2013. The North Pacific High and wintertime pre-conditioning of California current productivity. Geophysical Research Letters 40(3):541-546.     View Document Weber, Thomas C., Christopher Rooper, John Butler, Darin Jones, and Chris Wilson. 2013. Seabed classification for trawlability determined with a multibeam echo sounder on Snakehead Bank in the Gulf of Alaska. Fishery Bulletin (U.S.) 111(1):68-77.     View Document Wells, R.J. David, Susan E. Smith, Suzanne Kohin, Ellen Freund, Natalie Spear, and Darlene A. Ramon. 2013. Age validation of juvenile Shortfin Mako (Isurus oxyrinchus) tagged and marked with oxytetracycline off southern California. Fishery Bulletin (U.S.) 111(2):147-160.      
2014
  Anderson, Eric C., and Thomas C. Ng. 2014. Comment on 'Bayesian parentage analysis with systematic accountability of genotyping error, missing data and false matching'. Bioinformatics 30(5):743-745.     View Document Baumann-Pickering, Simone, Marie A. Roch, Robert L. Brownell Jr., Anne E. Simonis, Mark A. McDonald, Alba Solsona-Berga, Erin M. Oleson, Sean M. Wiggins, and John A. Hildebrand. 2014. Spatio-temporal patterns of beaked whale echolocation signals in the North Pacific. PLoS ONE 9(1):e86072 (17 p.).     View Document Bradford, Amanda L., and Karin A. Forney. 2014. Injury determinations for cetaceans observed interacting with Hawaii and American Samoa longline fisheries during 2007-2011. U.S. Department of Commerce, NOAA Technical Memorandum NMFS-PIFSC-39 (21 p.).       Field, John C., Steven Y. Litvin, Aaron Carlisle, Julia S. Stewart, William F. Gilly, and Rocio I. Ruiz-Cooley. 2014. Stable isotope analysis of Humboldt squid prey: Comment on Miller et al. (2013). Marine Ecology Progress Series 500:281-285.       Friedland, Kevin D., Bruce R. Ward, David W. Welch, and Sean A. Hayes. 2014. Postsmolt growth and thermal regime define the marine survival of steelhead from the Keogh River, British Columbia. Marine and Coastal Fisheries 6(1):1-11.       Kvamsdal, Sturla Furunes, and Stephen Milton Stohs. 2014. Estimating endangered species interaction risk with the Kalman filter. American Journal of Agricultural Economics 96(2):458-468.       Miller, Brian S., Kym Collins, Jay Barlow, Susannah Calderan, Russell Leaper, Mark McDonald, Paul Ensor, Paula A. Olson, Carlos Olavarria, and Michael C. Double. 2014. Blue whale vocalizations recorded around New Zealand: 1964-2013. Journal of the Acoustical Society of America 135(3):1616-1623.       Naro-Maciel, Eugenia, Stephen J. Gaughran, Nathan F. Putman, George Amato, Felicity Arengo, Peter H. Dutton, Katherine W. McFadden, Erin C. Vintinner, and Eleanor J. Sterling. 2014. Predicting connectivity of green turtles at Palmyra Atoll, centra Pacific: a focus on mtDNA and dispersal modelling. Journal of the Royal Society Interface 11(93): art.20130888 (13 p.).     View Document Roe, John H., Stephen J. Morreale, Frank V. Paladino, George L. Shillinger, Scott R. Benson, Scott A. Eckert, Helen Bailey, Pilar Santidrian Tomillo, Steven J. Bograd, Tomoharu Eguchi, Peter H. Dutton, Jeffrey A. Seminoff, Barbara A. Block, and James R. Spotila. 2014. Predicting bycatch hotspots for endangered leatherback turtles on longlines in the Pacific Ocean. Proceedings of the Royal Society B 281(1777): art. 20132559 (8 p.).     View Document Shamblin, Brian M., Alan B. Bolten, F. Alberto Abreu-Grobois, Karen A. Bjorndal, Luis Cardona, Carlos Carreras, Marcel Clusa, Catalina Monzon-Arguello, Campbell J. Nairn, Janne T. Nielsen, Ronel Nel, Luciano S. Soares, Kelly R. Stewart, Sibelle T. Vilaca, Oguz Turkozan, Can Yilmaz, and Peter H. Dutton. 2014. Geographic patterns of genetic variation in a broadly distributed marine vertebrate: new insights into loggerhead turtle stock structure from expanded mitochondrial DNA sequences. PLoS ONE 9(1):e85956 (12 p.).     View Document Stewart, Kelly R., and Peter H. Dutton. 2014. Breeding sex ratios in adult leatherback turtles (Dermochelys coriacea) may compensate for female-biased hatchling sex ratios. PLoS ONE 9(2):e88138 (5 p.).      
2013
  Allen, Camryn D., Garrett E. Lemons, Tomoharu Eguchi, Robin A. LeRoux, Christina C. Fahy, Peter H. Dutton, S. Hoyt Peckham, and Jeffrey A. Seminoff. 2013. Stable isotope analysis reveals migratory origin of loggerhead turtles in the Southern California Bight. Marine Ecology Progress Series 472:275-285.       Ammann, Arnold J., Cyril J. Michel, and R. Bruce MacFarlane. 2013. The effects of surgically implanted acoustic transmitters on laboratory growth, survival and tag retention in hatchery yearling Chinook salmon. Environmental Biology of Fishes 96(2-3):135-143.       Catry, P., R.T. Lemos, P. Brickle, R.A. Phillips, R. Matias, and J.P. Granadeiro. 2013. Predicting the distribution of a threatened albatross: The importance of competition, fisheries and annual variability. Progress in Oceanography 110:1-10.       Chapman, Eric D., Alex R. Hearn, Cyril J. Michel, Arnold J. Ammann, Steven T. Lindley, Michael J. Thomas, Philip T. Sandstrom, Gabriel P. Singer, Matthew L. Peterson, R. Bruce MacFarlane, and A. Peter Klimley. 2013. Diel movements of out-migrating Chinook salmon (Oncorhynchus tshawytscha) and steelhead trout (Oncorhynchus mykiss) smolts in the Sacramento/San Joaquin watershed. Environmental Biology of Fishes 96(2-3):273-286.       Cheney, Barbara, Paul M. Thompson, Simon N. Ingram, Philip S. Hammond, Peter T. Stevick, John W. Durban, Ross M. Culloch, Simon H. Elwen, Laura Mandleberg, Vincent M. Janik, Nicola J. Quick, Valentina Islas-Villanueva, Kevin P. Robinson, Marina Costa, Sonja M. Eisfeld, Alice Walters, Charlie Phillips, Caroline R. Weir, Peter G.H. Evans, Pia Anderwald, Robert J. Reid, James B. Reid, and Ben Wilson. 2013. Integrating multiple data sources to assess the distribution and abundance of bottlenose dolphins Tursiops truncatus in Scottish waters. Mammal Review 43(1):71-88.     View Document Clemento, Anthony J. 2013. Creation and utilization of novel genetic methods for studying and improving management of Chinook salmon populations. Ph.D. dissertation, University of California, Santa Cruz. 160 p.       Combes, V., F. Chenillat, E. Di Lorenzo, P. Riviere, M.D. Ohman, and S.J. Bograd. 2013. Cross-shore transport variability in the California Current: Ekman upwelling vs. eddy dynamics. Progress in Oceanography 109:78-89.       Curry, Barbara E. Curry, Katherine Ralls, and Rober L. Brownell Jr. 2013. Prospects for captive breeding of poorly known small cetacean species. Endangered Species Research 19(3):223-243.       Fiedler, Paul C., Roy Mendelssohn, Daniel M. Palacios, and Steven J. Bograd. 2013. Pycnocline variations in the eastern tropical and North Pacific, 1958-2008. Journal of Climate 26(2):583-599.       Frey, Amy, Peter H. Dutton, and George H. Balazs. 2013. Insights on the demography of cryptic nesting by green turtles (Chelonia mydas) in the main Hawaiian Islands from genetic relatedness analysis. Journal of Experimental Marine Biology and Ecology 442:80-87.     View Document Gutt, Julian, David K.A. Barnes, Susanne J. Lockhart, and Anton van de Putte. 2013. Antarctic macrobenthic communities: a compilation of circumpolar information. Nature Conservation 4:1-13.       Haltuch, Melissa A., Owen S. Hamel, Kevin R. Piner, Patrick McDonald, Craig R. Kastelle, and John C. Field. 2013. A California Current bomb radiocarbon reference chronology and petrale sole (Eopsetta jordani) age validation. Canadian Journal of Fisheries and Aquatic Sciences 70(1):22-31.       Hancock-Hanser, Brittany L., Amy Frey, Matthew S. Leslie, Peter H. Dutton, Frederick I. Archer, and Phillip A. Morin. 2013. Targeted multiplex next-generation sequencing: advances in techniques of mitochondrial and nuclear DNA sequencing for population genomics. Molecular Ecology Resources 13(2):254-268.       Hayes, Sean A., Nicole M. Teutschel, Cyril J. Michel, Cory Champagne, Patrick W. Robinson, Melinda Fowler, Tina Yack, David K. Mellinger, Samantha Simmons, Daniel P. Costa, and R. Bruce MacFarlane. 2013. Mobile receivers: releasing the mooring to 'see' where fish go. Environmental Biology of Fishes 96(2-3):189-201.       Hazen, Elliott L., Salvador Jorgensen, Ryan R. Rykaczewski, Steven J. Bograd, David G. Foley, Ian D. Jonsen, Scott A. Shaffer, John P. Dunne, Daniel P. Costa, Larry B. Crowder, and Barbara A. Block. 2013. Predicted habitat shifts of Pacific top predators in a changing climate. Nature Climate Change 3(3):234-238.       Jehl, Joseph R., Jr., and Annette E. Henry. 2013. Intra-organ flexibility in the eared grebe Podiceps nigricollis stomach: a spandrel in the belly. Journal of Avian Biology 44(2):97-101.       Jensen, Michael P., Nancy N. FitzSimmons, and Peter H. Dutton. 2013. Molecular genetics of sea turtles. In: Jeanette Wyneken, Kenneth J. Lohmann, and John A. Musick (eds.), The biology of sea turtles, Volume III, p. 135-161. CRC Press.       Jones, T. Todd, and Jeffrey A. Seminoff. 2013. Feeding biology: advances from field-based observations, physiological studies, and molecular techniques. In: Jeanette Wyneken, Kenneth J. Lohmann, and John A. Musick (eds.), The biology of sea turtles, Volume III, p. 211-247. CRC Press.     View Document Koch, Volker, Hoyt Peckham, Agnese Mancini, and Tomoharu Eguchi. 2013. Estimating at-sea mortality of marine turtles from stranding frequencies and drifter experiments. PLoS ONE 8(2):e56776 (10 p.).       Krause, Jeffrey W., Mark A. Brzezinski, Tracy A. Villareal, and Cara Wilson. 2013. Biogenic silica cycling during summer phytoplankton blooms in the North Pacific subtropical gyre. Deep-Sea Research I 71:49-60.     View Document Laidig, Thomas E., Lisa M. Krigsman, and Mary M. Yoklavich. 2013. Reactions of fishes to two underwater survey tools, a manned submersible and a remotely operated vehicle. Fishery Bulletin 111(1):54-67.       Lewison, Rebecca, Bryan Wallace, Joanna Alfaro-Shigueto, Jeffrey C. Mangel, Sara M. Maxwell, and Elliott L. Hazen. 2013. Fisheries bycatch of marine turtles: lessons learned from decades of research and conservation. In: Jeanette Wyneken, Kenneth J. Lohmann, and John A. Musick (eds.), The biology of sea turtles, Volume III, p. 329-352. CRC Press.       MacCall, Alec D. 2013. Use of the delta method to evaluate the precision of assessments that fix parameter values. Fisheries Research 142:56-60.       MacCall, Alec D., and Steven L.H. Teo. 2013. A hybrid stock synthesis - Virtual population analysis model of Pacific bluefin tuna. Fisheries Research 142:22-26.       MacDonald, Bradley D., Sheila V. Madrak, Rebecca L. Lewison, Jeffrey A. Seminoff, and Tomoharu Eguchi. 2013. Fine scale diel movement of the east Pacific green turtle, Chelonia mydas, in a highly urbanized foraging environment. Journal of Experimental Marine Biology and Ecology 443:56-64.       Michel, Cyril J., Arnold J. Ammann, Eric D. Chapman, Philip T. Sandstrom, Heidi E. Fish, Michael J. Thomas, Gabriel P. Singer, Steven T. Lindley, A. Peter Klimley, and R. Bruce MacFarlane. 2013. The effects of environmental factors on the migratory movement patterns of Sacramento River yearling late-fall run Chinook salmon (Oncorhynchus tshawytscha). Environmental Biology of Fishes 96(2-3):257-271.     View Document Moore, Jeffrey E., and Jay P. Barlow. 2013. Declining abundance of beaked whales (Family Ziphiidae) in the California Current large marine ecosystem. PLoS ONE 8(1):e52770 (12 p.).       Moran, Paul, David J. Teel, Michael A. Banks, Terry D. Beacham, M. Renee Bellinger, Scott M. Blankenship, John R. Candy, John Carlos Garza, Jon E. Hess, Shawn R. Narum, Lisa W. Seeb, William D. Templin, Colin G. Wallace, and Christian T. Smith. 2013. Divergent life-history races do not represent Chinook salmon coast-wide: the importance of scale in Quaternary biogeography. Canadian Journal of Fisheries and Aquatic Sciences 70(3):415-435.       Perretti, Charles T., Stephan B. Munch, and George Sugihara. 2013. Model-free forecasting outperforms the correct mechanistic model for simulated and experimental data. Proceedings of the National Academy of Sciences of the United States of America 110(13):5253-5257.       Pierson, James J., Bruce W. Frost, and Andrew W. Leising. 2013. Foray foraging behavior: seasonally variable, food-driven migratory behavior in two calanoid copepod species. Marine Ecology Progress Series 475:49-64.       Pritchard, Victoria L., Nathan R. Campbell, Shawn R. Narum, Mary M. Peacock, and John Carlos Garza. 2013. Discovery and characterization of novel genetic markers for use in the management of Lahontan cutthroat trout (Oncorhynchus clarkii henshawi). Molecular Ecology Resources 13(2):276-288.       Redfern, J.V., M.F. McKenna, T.J. Moore, J. Calambokidis, M.L. DeAngelis, E.A. Becker, J. Barlow, K.A. Forney, P.D. Fiedler, and S.J. Chivers. 2013. Assessing the risk of ships striking large whales in marine spatial planning. Conservation Biology 27(2):292-302.       Ruegg, Kristen, Howard C. Rosenbaum, Eric C. Anderson, Marcia Engel, Anna Rothschild, C. Scott Baker, and Stephen R. Palumbi. 2013. Long-term population size of the North Atlantic humpback whale within the context of worldwide population structure. Conservation Genetics 14(1):103-114.     View Document Ruiz-Cooley, Rocio I., Lisa T. Ballance, and Matthew D. McCarthy. 2013. Range expansion of the jumbo squid in the NE Pacific: d15N decrypts multiple origins, migration and habitat use. PLoS ONE 8(3): e59651 (7 p.).       St. Aubin, David J., Karin A. Forney, Susan J. Chivers, Michael D. Scott, Kerri Danil, Tracy A. Romano, Randall S. Wells, and Frances M.D. Gulland. 2013. Hematological, serum, and plasma chemical constituents in pantropical spotted dolphins (Stenella attenuata) following chase, encirclement, and tagging. Marine Mammal Science 29(1):14-35.     View Document Staaf, Danna J., Jessica V. Redfern, William F. Gilly, William Watson, and Lisa T. Ballance. 2013. Distribution of ommastrephid paralarvae in the eastern tropical Pacific. Fishery Bulletin (U.S.) 111(1):78-89.     View Document Tapilatu, Ricardo F., Peter H. Dutton, Manjula Tiwari, Thane Wibbels, Hadi V. Ferdinandus, William G. Iwanggin, and Barakhiel H. Nugroho. 2013. Long-term decline of the western Pacific leatherback, Dermochelys coriacea: a globally important sea turtle population. Ecosphere 4(2): article 25 (15 p.).       Teo, Steven L.H., Phil T. Sandstrom, Eric D. Chapman, Robert E. Null, Kurt Brown, A. Peter Klimley, Barbara A. Block. 2013. Archival and acoustic tags reveal the post-spawning migrations, diving behavior, and thermal habitat of hatchery-origin Sacramento River steelhead kelts (Oncorhynchus mykiss). Environmental Biology of Fishes 96(2-3):175-187.       Turvey, Samuel T., Claire L. Risley, Jeffrey E. Moore, Leigh A. Barrett, Hao Yujiang, Zhao Xiujiang, Zhou Kaiya, and Wang Ding. 2013. Can local ecological knowledge be used to assess status and extinction drivers in a threatened freshwater cetacean? Biological Conservation 157:352-360.       Woodson, Lindsay E., Brian K. Wells, Churchill B. Grimes, Robert P. Franks, Jarrod A. Santora, and Mark H. Carr. 2013. Water and otolith chemistry identify exposure of juvenile rockfish to upwelled waters in an open coastal system. Marine Ecology Progress Series 473:261-273.     View Document Yoklavich, Mary, Tom Laidig, Diana Watters, and Milton Love. 2013. Understanding the capabilities of new technologies and methods to survey west coast groundfishes: Results from a visual survey conducted in 2011 using the Dual Deepworker manned submersible at Footprint and Piggy banks off Southern California. [Final report to NMFS Science Advisor for Stock Assessments.] U.S. National Marine Fisheries Service, Santa Cruz, California. 28 p.      
2014
View Document Carretta, James V., Lyle Enriquez, and Charles Villafana. 2014. Marine mammal, sea turtle and seabird bycatch in California gillnet fisheries in 2012. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-526, 16 p.     View Document Mohr, Michael S., and Michael R. O'Farrell. 2014. The Sacramento Harvest Model (SHM). U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-525, 27 p.     View Document Walsh, Jennifer G. (ed.). 2014. AMLR 2010-2011 field season report. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-524, 72 p.      
2013
  Dewar, H., T. Eguchi, J. Hyde, D. Kinzey, S. Kohin, J. Moore, B.L. Taylor, and R. Vetter. 2013. Status review of the Northeastern Pacific population of white sharks (Carcharodon carcharias) under the Endangered Species Act. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-523.     View Document Satterthwaite, William H., Michael R. O'Farrell, and Michael S. Mohr. 2013. Klamath-Trinity Basin fall run Chinook salmon scale age analysis evaluation. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-522, 20 p.     View Document Stierhoff, Kevin L., John L. Butler, Scott A. Mau, and David W. Murfin. 2013. Abundance and biomass estimates of demersal fishes at the Footprint and Piggy Bank from optical surveys using a remotely operated vehicle (ROV). U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-521, 45 p.      
2014
View Document Villareal, Tracy A., and Cara Wilson. 2014. A comparison of the Pac-X trans-Pacific Wave Glider data and satellite data (MODIS, Aquarius, TRMM and VIIRS). PLoS ONE 9(3):e92280 (18 p.).      
2013
View Document Allen-Moran, Shanae D., Wiliiam H. Satterthwaite, and Michael S. Mohr. 2013. Sample size recommendations for estimating stock composition using genetic stock identification (GSI). U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-513, 26 p.     View Document Andrews-Goff, Virginia, Paula A. Olson, Nicholas J. Gales, and Michael C. Double. 2013. Satellite telemetry derived summer movements of Antarctic blue whales. Paper SC/65a/SH03 presented to the International Whaling Commission, Scientific Committee (SC65a meeting, Jeju Island, Republic of Korea, 2013). 10 p.     View Document Barlow, Jay. 2013. Inferring trackline detection probabilities from differences in apparent densities of beaked whales and dwarf & pygmy sperm whales in different survey conditions. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-508, 14 p.     View Document Bickham, John W., Jacqueline Doyle, J. Andrew DeWoody, Rebecca Pezdek, Kim Wooten, Nicholas Kellar, Marisa Trego, Jennifer Dupont, Todd O'Hara, and Celine A.J. Godard-Codding. 2013. Genetics and preliminary hormone analyses in western gray whale biopsy samples collected off Sakhalin Island in 2011. Paper SC/65a/BRG23 presented to the International Whaling Commission, Scientific Committee (SC65a meeting, Jeju Island, Republic of Korea, 2013). 5 p.     View Document Brownell, Robert L. Jr., and Naoko Funahashi. 2013. Status of small local populations of Indi-Pacific bottlenose dolphins (Tursiops aduncus) in the Japanese Archipelago. Paper SC/65a/SM26 presented to the International Whaling Commission, Scientific Committee (SC65a meeting, Jeju Island, Republic of Korea, 2013). 7 p.     View Document Brownell, Robert L. Jr., Salvatore Siciliano, and Jailson F. de Moura. 2013. Mass stranding of short-beaked common dolphins, Delphinus delphis, at Arraial do Cabo, Brazil: natural or human induced? Paper SC/65a/SM27 presented to the International Whaling Commission, Scientific Committee (SC65a meeting, Jeju Island, Republic of Korea, 2013). 5 p.     View Document Carretta, James V., Sarah M. Wilkin, Marcia M. Muto, Kristin Wilkinson. 2013. Sources of human-related injury and mortality for U.S. Pacific west coast marine mammal stock assessments, 2007-2011. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-514, 83 p.     View Document Cooke, Justin G., David W. Weller, Amanda L. Bradford, Olya Sychenko, Alexander M. Burdin, and Robert L. Brownell Jr. 2013. Population assessment of the Sakhalin gray whale aggregation. Paper SC/65a/BRG27 presented to the International Whaling Commission, Scientific Committee (SC65a meeting, Jeju Island, Republic of Korea, 2013). 12 p.     View Document de Vos, A., T. Wu, and R.L. Brownell Jr. 2013. Recent blue whale deaths due to ship strikes around Sri Lanka. Paper SC/65a/HIM03 presented to the International Whaling Commission, Scientific Committee (SC65a meeting, Jeju Island, Republic of Korea, 2013). 8 p.     View Document Double, M.C., J. Barlow, B.S. Miller, P. Olson, V. Andrews-Goff, R. Leaper, P. Ensor, N. Kelly, V. Wadley, M. Lindsay, D. Peel, S. Calderan, K. Collins, M. Davidson, C. Deacon, D. Donnelly, C. Olavarria, K. Owen, M. Rekdahl, N. Schmitt, and N. Gales. 2013. Cruise report of the 2013 Antarctic blue whale voyage of the Southern Ocean Research Partnership. Paper SC/65a/SH21 presented to the International Whaling Commission, Scientific Committee (SC65a meeting, Jeju Island, Republic of Korea, 2013). 16 p.     View Document Edwards, Elizabeth F., Nicholas M. Kellar, and William F. Perrin. 2013. Form, function and pathology in the pantropical spotted dolphin (Stenella attenuata). U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-516, 76 p.     View Document Gales, N., M. Bowers, J.W. Durban, A.S. Friedlaender, D.P. Nowacek, R.L. Pitman, A.J. Read, and R.B. Tyson. 2013. Advances in non-lethal research on Antarctic minke whales: biotelemetry, photo-identification and biopsy sampling. Paper SC/65a/IA12 presented to the International Whaling Commission, Scientific Committee (SC65a meeting, Jeju Island, Republic of Korea, 2013). 15 p.     View Document Galletti Vernazzani, Barbara, and Paula Olson. 2013. Progress on the Southern Hemisphere Blue Whale Catalogue. Paper SC/65a/SH23 presented to the International Whaling Commission, Scientific Committee (SC65a meeting, Jeju Island, Republic of Korea, 2013). 5 p.     View Document Galletti Vernazzani, Barbara, Elsa Cabrera, Mariano Sironi, Carole Carlson, and Robert L. Brownell Jr. 2013. Sighting records of blue whales from 2013 aerial and boat-based surveys in Chilean waters. Paper SC/65a/SH17 presented to the International Whaling Commission, Scientific Committee (SC65a meeting, Jeju Island, Republic of Korea, 2013). 6 p.     View Document Jacobson, Eiren K., Tina M. Yack, and Jay Barlow. 2013. Evaluation of an automated acoustic beaked whale detection algorithm using multiple validation and assessment methods. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-509, 26 p.     View Document Keating, Jennifer L., and Jay Barlow. 2013. Summary of PAMGUARD beaked whale click detectors and classifiers used during the 2012 Southern California behavioral response study. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-517, 14 p.     View Document Miller, Brian S., Jay Barlow, Susannah Calderan, Kym Collins, Russell Leaper, Natalie Kelly, David Peel, Paula Olson, Paul Ensor, and Michael C. Double. 2013. Long-range acoustic tracking of Antarctic blue whales. Paper SC/65a/SH18 presented to the International Whaling Commission, Scientific Committee (SC65a meeting, Jeju Island, Republic of Korea, 2013). 17 p.     View Document Miller, Brian S., Kym Collins, Jay Barlow, Susannah Calderan, Russell Leaper, Mafk McDonald, Paul Ensor, Paula Olson, Carlos Olavarria, and Michael C. Double. 2013. Blue whale songs recorded around South Island, New Zealand. Paper SC/65a/SH19 presented to the International Whaling Commission, Scientific Committee (SC65a meeting, Jeju Island, Republic of Korea, 2013). 18 p.     View Document Monk, Melissa, E.J. Dick, Troy Buell, Linda ZumBrunnen, Alison Dauble, and Don Pearson. 2013. Documentation of a relational database for the Oregon Sport Groundfish onboard Sampling Program. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-519, 69 p.     View Document O'Farrell, Michael R., Michael S. Mohr, Melodie L. Palmer-Zwahlen, and Allen M. Grover. 2013. The Sacramento Index (SI). U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-512, 36 p.     View Document Olson, Paula A., Koji Matsuoka, and Luis Pastene. 2013. Comparison of Antarctic blue whale photographs from JARPA to the Antarctic Blue Whale Catalogue. Paper SC/65a/SH16 presented to the International Whaling Commission, Scientific Committee (SC65a meeting, Jeju Island, Republic of Korea, 2013). 4 p.     View Document Olson, Paula A., Paul Ensor, Carlos Olavarria, Natalie Schmitt, Simon Childerhouse, Rochelle Constantine, Brian S. Miller, and Michael C. Double. 2013. New Zealand blue whales: initial photo-identification of a little-known population. Paper SC/65a/SH12 presented to the International Whaling Commission, Scientific Committee (SC65a meeting, Jeju Island, Republic of Korea, 2013). 5 p.     View Document Olson, Paula A., Paul Ensor, Natalie Schmitt, Carlos Olavarria, and Michael C. Double. 2013. Photo-identification of Antarctic blue whales during the SORP Antarctic Blue Whale Voyage 2013. Paper SC/65a/SH11 presented to the International Whaling Commission, Scientific Committee (SC65a meeting, Jeju Island, Republic of Korea, 2013). 6 p.     View Document Perrin, W.F., and R.L. Brownell Jr. 2013. Proposed 2013 updates to the IWC list of recognised species of cetaceans. Paper SC/65a/O01 presented to the International Whaling Commission, Scientific Committee (SC65a meeting, Jeju Island, Republic of Korea, 2013). 4 p.     View Document Punt, Andre E., and Jeffrey E. Moore. 2013. Seasonal gray whales in the Pacific Northwest: An assessment of optimum sustainable population level for the Pacific Coast Feeding Group. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-518, 20 p.     View Document Rankin, Shannon, Jay Barlow, Yvonne Barkley, and Robert Valtierra. 2013. A guide to constructing hydrophone arrays for passive acoustic data collection during NMFS shipboard cetacean surveys. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-511, 33 p.     View Document Sakuma, Keith M., Arnold J. Ammann, and Dale A. Roberts. 2013. Photographic guide of pelagic juvenile rockfish (Sebastes spp.) and other fishes in mid-water trawl surveys off the coast of California. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-515, 48 p.     View Document Stierhoff, Kevin L., Scott A. Mau, and David W. Murfin. 2013. A fishery-independent survey of cowcod (Sebastes levis) in the Southern CA Bight using a remotely operated vehicle (ROV). U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-520, 86 p.     View Document Thomas, Peter O., Marcela Uhart, Denise McAloose, Mariano Sironi, Victoria J. Rowntree, Robert L. Brownell Jr., Frances M.D. Gulland, Michael J. Moore, Carina Maron, and Cara Wilson. 2013. Workshop on the Southern right whale die-off at Peninsula Valdes, Argentina. Paper SC/65a/BRG15 presented to the International Whaling Commission, Scientific Committee (SC65a meeting, Jeju Island, Republic of Korea, 2013). 5 p.     View Document Touhey Moore, Kathleen, and Susan Gwynn Barco. 2013. Handbook for recognizing, evaluating, and documenting human interaction in stranded cetaceans and pinnipeds. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-510, 94 p.     View Document Urban R., J., D. Weller, O. Tyurneva, S. Swartz, A. Bradford, Y. Yakovlev, O. Sychenko, H. Rosales N., S. Martinez A., A. Burdin, and A. Gomez-Gallardo U. 2013. Report on the photographic comparison of the Sakhalin Island and Kamchatka Peninsula with the Mexican gray whale catalogues. Paper SC/65a/BRG04 presented to the International Whaling Commission, Scientific Committee (SC65a meeting, Jeju Island, Republic of Korea, 2013). 5 p.     View Document Weller, David W., Shannon Bettridge, Robert L. Brownell Jr., Jeffrey L. Laake, Jeffrey E. Moore, Patricia E. Rosel, Barbara L. Taylor, and Paul R. Wade. 2013. Report of the National Marine Fisheries Service gray whale stock identification workshop. U.S. Department of Commerce, NOAA Technical Memorandum NMFS, NOAA-TM-NMFS-SWFSC-507, 55 p.      
2014
  Lo, Nancy C.H., and Benjamin E. Fissel. 2014. Stock assessment through egg production methods in the U.S. In: Konstantinos Ganias (ed.), Biology and ecology of sardines and anchovies, p. 309-334. CRC Press.    
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