Publications

1997199819992000200120022003200420052006

2006

Butler, J., Neuman, M., Pinkard, D., Kvitek, R., and Cochrane, G. In press. The use of multibeam benthic habitat mapping techniques to refine population estimates of the endangered white abalone (Haliotis sorenseni). Fishery Bulletin. October 2006.



2005


Acuna, E. S., R. L. Charter and W. Watson. 2005. Ichthyoplankton and station data for surface (Manta) and oblique (Bongo) plankton tows for California Cooperative Oceanic Fisheries Investigations survey cruises in 2003. U.S. Dep. Commer., NOAA Tech. Memo., NMFS, NOAA-TM-NMFS-SWFSC-370. 112 pp.

Ballance, L.T., R.L. Pitman, R.P. Hewitt, D. Siniff, W. Trivelpiece, P. Clapham, and R.L. Brownell, Jr. In press. The Removal of Large Whales from the Southern Ocean: Evidence for Long-Term Ecosystem Effects? In J. Estes et al. (Eds.), The Role of Large Whales in the Ecosystem. UC Press.

Butler, J., M. Neuman, D. Pinkard, R. Kviteck, and G. Cochrane. Submitted. New estimates of habitat and abundance of white abalone (Haliotis sorenseni) in Southern California. Fishery Bulletin.

Conti, S. G., P. Roux, C. Fauvel, B. D. Maurer, and D. A. Demer. In press. Acoustical characterization and monitoring of fish swimming in a tank. Aquaculture.

Conti, S. G., D. A. Demer, M.A. Soule, and J. H. E. Conti. Accepted May 2005. Improved multiple-frequency method for measuring in-situ target strengths. ICES Journal of Marine Science.

Conti, S.G., D.A. Demer and Andrew S. Brierley. (In press Feb. 2005). Broadbandwidth sound scattering and absorption from krill (Meganyctiphanes norvegica), mysids (Praunus flexuousus and Neomysis integer) and shrimp (Crangon crangon), ICES Journal of Marine Science.

De Maddalena, A., Preti, A., and R. Smith. 2005. Mako Sharks. Krieger Publishing Company: Malabar, Florida. 72 pp.

Demer, D.A. and S.G. Conti. 2005. New target-strength model indicates more krill in the Southern Ocean. ICES Journal of Marine Science, 62(1):25-32.

Felix-Uraga, R., V. M. Gomez-Munoz, C. Quinonez-Velazquez, F. N. Melo-Barrera, K. T. Hill, and W. Garcia-Franco. 2005. Pacific sardine, Sardinops sagax, stock discrimination off the west coast of Baja California and southern California using otolith morphometry. CalCOFI Reports vol. 46:113-121.

Goericke, R., E. Venrick, A. Mantyla, S. J. Bograd, F. B. Schwing, A. Huyer, R. L. Smith, P. A. Wheeler, R. Hooff, W. T. Peterson, F. Chavez, C. Collins, B. Marinovic, N. C. H. Lo, G. Gaxiola-Castro, R. Durazo, K. D. Hyrenbach, and W. J. Sydeman. (In press). The state of the California Current, 2004 – 2005: Still cool? CalCOFI Reports vol. 46.

Herrick Jr., S., K. Hill and C. Reiss. (2005). An optimal harvest policy for the recently renewed United States Pacific sardine fishery. In Climate change and the economics of the world's fisheries, R. Hanesson, S. Herrick, Jr., and M. Barange (eds). Edward Elgar, UK.

Hyde, J.R., E. Lynn, R. Humphreys Jr., M. Musyl, A.P. West, and R. Vetter. 2005. Shipboard identification of fish eggs and larvae by multiplex PCR, and description of fertilized eggs of blue marlin, shortbill spearfish, and wahoo. Marine Ecology Progress Series, 286:269-277.

Hsieh, C., C. Reiss, W. Watson, M. J. Allen, J. R. Hunter, R. N. Lea, R. Rosenblatt, P. E. Smith, and G. Sugihara. 2005. A comparison of long-term trends and variability in populations of larvae of exploited and unexploited fishes in the Southern California region: a community approach. Progress in Oceanography 67:160-185.

Kim, J. Y., N. C. H. Lo, and J. I. Kim. 2005. Correction factors for quantitative analysis of anchovy eggs and larval stages from the southern waters of Korea. Ocean Science Journal 40(1):11-16.

Levin, P. S., E. E, Holmes, K. R., Piner, and C. J. Harvey. (2005). Shifts in a Pacific Ocean fish assemblage: the potential influence of exploitation. Conservation Biology.

Lo, N. C. H., B. J. Macewicz, and D. A. Griffith. 2005. Spawning biomass of Pacific sardine, Sardinops sagax, from 1994-2004 off California. CalCOFI Reports vol. 46:93-112.

Moser, H. G. and W. Watson. 2005. Myctophidae: Lanternfishes. In Early stages of Atlantic fishes: an identification guide for the western central North Atlantic, W. J. Richards, ed. Boca Raton: CRC Press, pp 473-579.

Moser, H. G. and W. Watson. 2005. Neoscopelidae: Blackchins. In Early stages of Atlantic fishes: an identification guide for the western central North Atlantic, W. J. Richards, ed. Boca Raton: CRC Press, pp. 463-471.

Moser, H. G. and W. Watson. 2005. Order Myctophiformes. In Early stages of Atlantic fishes: an identification guide for the western central North Atlantic, W. J. Richards, ed. Boca Raton: CRC Press, page 461.

Piner, K.R., M.A. Haltuch and J.R. Wallace. (In press). A preliminary evaluation of the use of oxygen stable isotopes and the 1983 El Nino to assess ageing accuracy of black rockfish (Sebastes melanops). Fishery Bulletin, 103(3).

Piner, K.R., J.R. Wallace, O.S., Hamel, and R. Mikus. (submitted). Evaluation of ageing accuracy of bocaccio (Sebastes paucispinis) rockfish using bomb radiocarbon. Fish. Res.

Pinkard, D. R., D. M. Kocak, and J. B. Butler. 2005. "Use of a Video and Laser System to Quantify Transect Area for Remotely Operated Vehicle (ROV) Rockfish and Abalone Surveys" Proc. MTS/IEEE Oceans 2005, Washington, D.C., Sept. 2005.

Preti, A., S. E. Smith, and D. A. Ramon. 2005. Diet differences in the thresher shark (Alopias vulpinus) during transition from a warm-water regime to a cool-water regime off California-Oregon, 1998-2000. CalCOFI Reports 45:118-125.

Sakuma, K. M., C. A. Taylor, and W. Watson. 2005. Pigment variability in larval Sebastes jordani off central California. Journal of Fish Biology 67:510-520.

Smith, P. E. 2005. A history of proposals for subpopulation structure in the Pacific sardine (Sardinops sagax) population off Western North America. CalCOFI Reports 46:75-82.

Smith, Susan E. 2005. Leopard Shark, pp. 281-283, In Sharks, Rays and Chimaeras: The Status of Chondrichthyan Fishes. Status Survey, Fowler, S. L., Canvanaugh, R. D., Camhi, M., Burgess, G. H., Cailliet, G. M., Fordham, S. V., Simpensorfer, C. A., and J.A. Musick, eds. IUCN/SSC Shark Specialist Group. IUCN, Glad Switzerland and Cambridge, UK. 461 pp.

Smith, S. E. 2005. Leopard shark mating observed off La Jolla, California. Calif. Fish Game 91(1):128-135.

Squires, D. and S. Stohs. In press. Data for Economic Analysis of Commercial Fisheries, In Economics for Fisheries Management: An Analytical Guide for Practitioners. Ashgate Publishing.

Taylor, C.A. and W. Watson. (In press). Utility of larval pigmentation to identify nearshore rockfishes of the Sebastes subgenus Pteropodus from Southern California. CalCOFI Reports volume 45.

Taylor, C.A., W. Watson, T. Chereskin, J.R. Hyde and R. Vetter. (In press). Distributions of larval rockfishes, Sebastes, identified using molecular methods, suggest a pattern of retention near natal habitat in the Southern California Bight. CalCOFI Reports volume 45.

Watson, W., H.J. Walker, Jr., D.G. Smith, C. Thacker, and G.P. Owen . 2005. Order M icrodesmidae: Wormfishes. In Early stages of Atlantic fishes: an identification guide for the western central North Atlantic, W. J. Richards, ed. Boca Raton: CRC Press, pages 2089-2103.

Watson, W. and H.J. Walker . 2005. Order Ptereleotridae: Dartfishes. In Early stages of Atlantic fishes: an identification guide for the western central North Atlantic, W. J. Richards, ed. Boca Raton: CRC Press, pages 2105-2107.



2004


Brandon, M.A., M. Naganobu, D.A. Demer, P. Chernyshkov, P.N. Trathan, S.E. Thorpe, T. Kameda, O.A. Berezhinskiy, E.J. Hawker, and S. Grant. (2004). “Physical oceanography in the Scotia Sea during the CCAMLR 2000 survey, austral summer 2000,” Deep-Sea Research II, 51:1301–1321.


Chih-hao Hsieh, M. James Allen, John R. Hunter, Robert N. Lea, Christian Reiss, Richard Rosenblatt, Paul E. Smith, George Sugihara, William Watson. A comparison of long-term trends and variability in populations of larvae of exploited and unexploited fishes in the Southern California region: a community approach. (submitted to Progress in Oceanography).

Demer, D.A. (2004). “An estimate of error for the CCAMLR 2000 survey estimate of krill biomass,” Deep-Sea Research II, 51:1237–1251.

Hare, J. A., Thorrold, S. R., Walsh, H., Reiss, C. S., Valle-Levinson, A., and C. M. Jones. Bio physical mechanisms of larval fish ingress into Chesapeake Bay. (submitted to Limnol. and Oceanogr., accepted 2004).

Herrick, S. F., Squires, D. and C.A. Tisdell. 2004. Economic benefits of dolphins in the United States eastern tropical Pacific purse-seine tuna industry. Environmental & Resource Economics, 28(4): 451-468, August, 2004.

Hewitt, R.P., S. Kim, M. Naganobu, M. Gutierrez, D. Kang, Y. Takao, J. Quinones, Y.-H. Lee, H.-C. Shin, S. Kawaguchi, J.H. Emery, D.A. Demer, and V.J. Loeb. (2004). “Variation in the biomass density and demography of Antarctic krill in the vicinity of the South Shetland Islands during the 1999/2000 austral summer,” Deep-Sea Research II, 51:1411–1419.

Hewitt, R.P., I. Everson and C.D. Jones. Submitted. Reconciling fisheries with conservation: Three examples from the Southern Ocean. Proceedings of the Fourth World Fisheries Congress.

Hewitt, R.P., G. Watters, P.N, Trathan, J.P. Croxall, M.E. Goebel, D. Ramm, K. Reid, W.Z. Trivelpiece and J.L. Watkins. 2004. Options for allocating the precautionary catch limit for krill among small-scale management units in the Scotia Sea. CCAMLR Science 11: 81-97.

Hewitt, R.P., J. Watkins, M. Naganobu, V. Sushin, A.S. Brierley, D.A. Demer, S. Kasatkina, Y. Takao, C. Goss, A. Malyshko, M. Brandon, S. Kawaguchi, V. Siegel, P. Trathan, J. Emery, I. Everson, and D. Miller. (2004). “Biomass of Antarctic krill in the Scotia Sea in January/February 2000 and its use in revising an estimate of precautionary yield,” Deep-Sea Research II, 51:1215–1236.

Holm-Hansen, O., M. Kahru, C.D. Hewes, S. Kawaguchi, T. Kameda, V.A. Sushin, I. Krasovski , J. Priddle, R. Korb, R.P. Hewitt, and B.G. Mitchell. (2004). Temporal and spatial distribution of chlorophyll-a in surface waters of the Scotia Sea as determined by both shipboard measurements and satellite data. Deep-Sea Research II, 51:1323-1332.

Holm-Hansen, O., M. Naganobu, S. Kawaguchi, T. Kameda, I. Krasovski, P. Tchernyshkov, J. Priddle, R. Korb, M. Brandon, D. Demer, R.P. Hewitt, M. Kahru, and C.D. Hewes. (2004). “Factors influencing the distribution, biomass, and productivity of phytoplankton in the Scotia Sea and adjoining waters,” Deep-Sea Research II, 51:1333–1350.

Lai NC, Dalton N, Lai YY, Kwong C, Rasmussen R, Holts D, Graham JB. 2004. A comparative echocardiographic assessment of ventricular function in five species of sharks. Comparative Biochemistry and Physiology Part A. 137(3) 505-521.

Macewicz, B. J., J. R. Hunter, N. C. H. Lo, and E. L. LaCasella. 2004. Fecundity, egg deposition, and mortality of market squid (Loligo opalescens). Fish. Bull. 102:306-327.

McGehee, D.E., D.A. Demer and J.D. Warren. (2004). “Zooplankton in the Ligurian Sea: Part I. Characterization of their dispersion, relative abundance and environment during summer 1999,” Journal of Plankton Research, 26(12):1409-1418.

Murphy, E.J., S. E. Thorpe, J. L. Watkins and R.P. Hewitt. (2004). Modeling the krill transport pathways in the Scotia Sea: spatial and environmental connections generating the seasonal distribution of krill. Deep-Sea Research II, 51: 1435-1456.

Panteleev. B. deYoung, Reiss, C. S. and C.T. Taggart. 2004 (In press). Passive tracer reconstruction as a least squares problem with a semi-lagrangian constraint: An application to fish eggs and larvae. Journal of Marine Research, 62(6):

Panteleev, G. G.; de Young, B.; Luneva, M.; Reiss, C.; Semenov, E. V. 2004. Modeling the circulation of Western Bank on the Scotian Shelf through sequential application of a variational algorithm and a nonlinear model. J. Geophys. Res., 109(C2):15000-15012.

Piner K. R., O. S., Hamel, J. L., Menkel, J. R., Wallace, and C. E. Hutchinson. (In press). Age validation of canary rockfish (Sebastes pinniger) from off the Oregon coast (USA) using the bomb radiocarbon method. Can. J. Fish. Aquat. Sci.

Piner, K. R., and Wischniowski, S. G. 2004. Pacific halibut (Hippoglossus stenolepis) chronology of bomb radiocarbon in otoliths from 1944-1981 and a validation of ageing methods. J. Fish Bio. 64:1060-1071.

Piner, K. R., and Jones, C. M., (in press). Age, growth and the potential for growth overfishing of spot (Leiostomus xanthurus) from the Chesapeake Bay, eastern USA. Marine and Freshwater Research.

Preti, A., S.E. Smith and D.A. Ramon. 2004 (In press). Diet differences in the thresher shark (Alopias vulpinus) during transition from a warm to cool-water regime off California-Oregon, 1998-2000. CalCOFI Reports 2004 ed.

Reilly, S., S. Hedley, J. Borberg, R. Hewitt, D. Thiele, J. Watkins and M. Naganobu. (2004). Biomass and energy transfer to baleen whales in the South Atlantic sector of the Antarctic. Deep-Sea Research II, 51: 1397-1410.

Reiss, C.S., McLaren, I.A., Avendano, P., and Taggart, C.T. Spatio-temporal patterns of the feeding ecology of Silver hake larvae (Merluccius bilinearis) on the Scotian Shelf. (submitted J. Fish. Biol. January 2004).

Reiss, C.S., Maxwell, M.R., Hunter, J.R., and Henry, A. Environmental effects on population dynamics of Loligo opalescens in the southern California Bight. (submitted to CalCOFI Reports, February 2004).

Smith, Susan E. (Approved by Center and submitted to journal). "Leopard shark (Triakis semifasciata) mating activity observed off La Jolla, California." California Fish and Game Quarterly.

Smith, D.R., Brown, J.A. and N.C.H. Lo. (2004). Application of adaptive sampling to biological populations. In W.L. Thompson (Ed.), Sampling rare or elusive species: Concepts, designs, and techniques for estimating population parameters. Washington D.C.: Island Press.

Taylor, C. A. and W. Watson. (In press). Utility of larval pigmentation to identify nearshore rockfishes (Sebastes) from southern California. Calif. Coop. Oceanic Fish. Invest. Rep. 45.

Taylor, C. A., Watson, W., Chereskin, T., Hyde, J. and R. Vetter. (In press). Distributions of larval rockfishes, Sebastes, identified using molecular methods, suggest a pattern of retention near natal habitat in the Southern California Bight. Calif. Coop. Oceanic Fish. Invest. Rep. 45.

Warren, J.D., D.A. Demer, D.E. McGehee, R. Di Mento, and J.F. Borsani. (2004). “Zooplankton in the Ligurian Sea: Part II. Exploration of their physical and biological forcing functions during summer 2000,” Journal of Plankton Research, 26(12):1419-1427.

Watkins, J.L., R.P. Hewitt, M. Naganobu and V. Sushin. (2004). The CCAMLR 2000 Survey: a multinational, multi-ship biological oceanography survey of the Atlantic sector of the Southern Ocean. Editorial in Deep-Sea Research II, 51: 1205-1214.

Watson, W. and H. J. Walker, Jr. 2004. The world’s smallest vertebrate, Schindleria brevipinguis, a new paedomorphic species in the family Schindleriidae (Perciformes: Gobioidei). Rec. Aust. Mus., 56(2): 139–142.

Wells, B. K., Grimes, C. B., Field, J. C., and C. S. Reiss. Covariation between the average lengths of mature coho (Oncorhynchus kisutch) and Chinook salmon (Oncorhynchus tshawytscha) and the ocean environment (submitted to Fish. Oceanogr. May 2004)


2003

Abookire, A. A., and B. J. Macewicz. 2003. Longitudinal variation in reproductive biology and growth of female Dover sole (Microstomus pacificus) in the North Pacific, with emphasis on the Gulf of Alaska stock. Journal of Sea Research 50:187-197.

Browman, H.I., R.D. Vetter, C.A. Rodriguez, JJ. Cullen, R.F. Davis, E. Lynn, and J.-F. St.-Pierre. 2003. Ultraviolet (280-400 nm) induced DNA damage in the eggs and larvae of Calanus finmarchicus G. (Copepoda) and Atlantic cod (Gadus morhua). Photochem. Photobiol. 77(4):397-404.

Butler, J.L., L.D. Jacobson, J.T. Barnes, and H.G. Moser. 2003. Biology and population dynamics of cowcod (Sebastes levis) in the southern California Bight. Fish. Bull., U.S. 101:260-280.

Demer, D.A. and S.G. Conti. 2003. Reconciling theoretical versus empirical target strengths of krill: effects of phase variability on the distorted-wave Born approximation. ICES J. Mar. Sci. 60:429-434.

Demer, D.A., S.G. Conti, J. De Rosny, and P. Roux. 2003. Absolute measurements of total target strength from reverberation in a cavity. J. Acoust. Soc. Am. 113(3):1387-1394.

Hunter, J. R., and B. J. Macewicz. 2003. Improving the accuracy and precision of reproductive information used in fisheries. In: Report of the working group on Modern approaches to assess maturity and fecundity of warm- and cold-water fish and squids. Bergen, Norway 4-7 September 2001. Kjesbu, O. S., J. R. Hunter and P. R. Witthames, editors. Fisken og Havet. Nr. 12-2003, pp. 57-68.

Hyrenbach, K.D. and R.C. Dotson. 2003. Assessing the susceptibility of female black-footed albatross (Phoebastria nigripes) to longline fisheries during their post-breeding dispersal: an integrated approach. Biol. Cons. 112:391-404.

Kirkley, J.E., D. Squires, M.F. Alam and J.O. Ishak. 2003. Excess capacity and asymmetric information in developing country fisheries: the Malaysian purse seine fishery. Amer. J. Agr. Econ. 85(3):647-662.

Lai N.C., Korsmeyer K.E., Holts, D., Ramon D. 2003 Metabolic rates of two oceanic elasmobranchs, the shortfin mako (Isurus oxyrinchus) and the pelagic ray (Dasyatis violacea). FASEB 17(4) A422.

Macewicz, B. J., J. R. Hunter and N. C. H. Lo. 2003. Lifetime fecundity of the market squid, Loligo opalescens, with application to monitoring escapement. In: Report of the working group on Modern approaches to assess maturity and fecundity of warm- and cold-water fish and squids. Bergen, Norway 4-7 September 2001. Kjesbu, O. S., J. R. Hunter and P. R. Witthames, editors. Fisken og Havet. Nr. 12-2003, pp. 79-87.

Ortiz, M., E.D Prince, J.E. Serafy, D.B. Holts, K.B. Davy, J.G. Peperell, M.B. Lowry, J.C. Holdsworth. 2003. Global overview of the major constituent-based billfish tagging programs and their results since 1954. Marine and Freshwater Research, 54(4):489-507.

Reiss, C.S., McLaren I.A. and Avendano, P. 2003. Horizontal and vertical distribution patterns, retention rates and population dynamics of zooplankton on Western Bank, Scotian Shelf. Can. J. Fish. Aquat. Sci. 60:1229-1240.

Smith, D. R., J. Brown, and N. Lo. Application of adaptive sampling to biological population. In press. In Sampling rare or elusive species (ed by Bill Thompson). Island Press.

Smith, S.E., R.A. Mitchell, and D. Fuller. 2003. Age-validation of a leopard shark (Triakis semifasciata) recaptured after 20 years. Fish. Bull., U.S. 101:194-198.

Squires, D., R.Q. Grafton, M.F. Alam, and I.H. Omar. 2003. Technical efficiency in the Malaysian gill net artisanal fishery. Envir. Dev. Econ. 8:481-504.

Velez, J. A., W. Watson, E. M. Sandknop, and W. Arntz. 2003. Larval development of the Pacific sandperch (Prolatilus jugularis) (Pisces: Pinguipedidae) from the Independencia Bight, Pisco, Peru. J. Mar. Biol. Assoc. U. K. 83: 1137-1142.


2002

Alam, M.F., I.H. Omar, and D. Squires. 2002. Sustainable fisheries development in the tropics: trawlers and license limitation in Malaysia. Appl. Econ. 2002(34):325-337.

Browman, H.I., and R.D. Vetter. 2002. Impacts of ultraviolet radiation on crustacean zooplankton and ichthyoplankton: Case studies from subarctic marine ecosystems. In UV radiation and arctic ecosystems, D. Hessen (ed.). Springer-Verlag, Berlin, Heidelberg, Ecological Studies 153:261-304.

Buonaccorsi, V.P., C.A. Kimbrell, E.A. Lynn, and R.D. Vetter. 2002. Population structure of copper rockfish (Sebastes caurinus) reflects postglacial colonization and contemporary patterns of larval dispersal. Can. J. Aquat. Sci. 59:1374-1384.

Churnside, J.H., D.A. Demer, and B. Mahmoudi. 2003. A comparison of lidar and echosounder measurements of fish schools in the Gulf of Mexico. ICES J. Mar. Sci. 60:147-154.

Dutton, P.H., L. Sarti, R. Marquez, and D. Squires. 2002. Sea turtle conservation across the shared marine border. In Both sides of the border, L Fernandez & R.T. Carson (eds.). Kluwer Academic Publishers, Netherlands, pp 429-453.

Grafton, R.Q. and D. Squires. 2002. A property-rights perspective of efficiency: privatizing the commons. In Efficiency in the public sector, K. Fox (ed.). Kluwer Academic Publishers, Netherlands, Chapter 4, pp 83-100.

Hewitt, R.P., J.L. Watkins, M. Naganobu, P. Tshernyshkov, A.S. Brierley, D.A. Demer, S. Kasatkina, Y. Takao, C. Goss, A. Malyshko, M.A. Brandon, S. Kawaguchi, V. Siegel, P.N. Trathan, J.H. Emery, I. Everson and D.G.M. Miller. 2002. Setting a precautionary catch limit for Antarctic krill. Oceanography 15(3):26-33.

Lynn, R.J. and S. J. Bograd. 2002. Dynamic evolution of the 1997-1999 El Nino-La Nina cycle in the southern California Current System. Progr. Oceanogr. 54(2002):59-75.

McFarlane, G.A., P.E. Smith, T.R. Baumgartner, and J.R. Hunter. 2002. Climate variability and Pacific sardine populations and fisheries. Am. Fish. Soc. Symp. 32:195-214.

Moser, H.G., R.L. Charter, P.E. Smith, D.A. Ambrose, W. Watson, S.R. Charter, and E.M. Sandknop. 2002. Distributional atlas of fish larvae and eggs from Manta (surface) samples collected on CalCOFI surveys from 1977 to 2000. CalCOFI Atlas 35, 97 pp.

Viswanathan, K.K., I.H. Omar, Y. Jeon, J. Kirkley, D. Squires, and I. Susilowati. 2002. Fishing skill in developing country fisheries: the Kedah, Malaysia trawl fishery. Mar. Res. Econ. 16:293-314.

Watson, W., R.L. Charter, H.G. Moser, D.A. Ambrose, S.R. Charter, E.M. Sandknop, L.L. Robertson, and E.A. Lynn. 2002. Distributions of planktonic fish eggs and larvae off two state ecological reserves in the Santa Barbara Channel vicinity and two nearby islands in the Channel Islands National Marine Sanctuary, California. Calif. Coop. Oceanic Fish. Invest. Rep. 43:141-154.


2001

Bograd, S.J. and R.J. Lynn. 2001. Physical-biological coupling in the California Current during the 1997-99 El Nino-La Nina cycle. Geophysical Research Letters 28(2):275-278.

Butler, J.L., L.D. Jacobson, J.T. Barnes, and H.G. Moser. Submitted to Fish. Bull., U.S. Biology and population dynamics of cowcod rockfish (Sebastes levis) off southern California, 1916-1998.

Coan, A.L., Jr. 2001. Skipjack Tuna. In California's Living Marine Resources: A Status Report. California Department of Fish and Game, University of California Agriculture and Natural Resources, W.S. Leet , C.M. Dewees, R. Klingbiel, and E. J. Larson (eds). Sea Grant Publication SG01-11, pp 328-330.

Coan, A.L., Jr. 2001. Yellowfin Tuna. In California's Living Marine Resources: A Status Report. California Department of Fish and Game, University of California Agriculture and Natural Resources, W.S. Leet , C.M. Dewees, R. Klingbiel, and E. J. Larson (eds). Sea Grant Publication SG01-11, pp 331-333.

Crone, P.R. 2001. Albacore. In California's Living Marine Resources: A Status Report. California Department of Fish and Game, University of California Agriculture and Natural Resources, W.S. Leet , C.M. Dewees, R. Klingbiel, and E. J. Larson (eds). Sea Grant Publication SG01-11, pp 317-321.

Crone, P.R. 2001. Spatial differences in maturity schedules of female Dover sole off Oregon (1989-1991). Fish. Res. 51(2001):393-402.

Durazo, R., T.R. Baumgartner, S.J. Bograd, C.A. Collins, S. de la Campa, J. Garcia, G. Gaxiola-Castro, A. Huyer, K.D. Hyrenbach, D. Loya, R.J. Lynn, F.B. Schwing, R.L. Smith, W.J. Sydeman, and P. Wheeler. 2001. The state of the California Current, 2000-2001: a third straight La Nina year. Calif. Coop. Oceanic Fish. Invest. Rep. 42:29-60.

Hyrenbach, K.D. and R. C. Dotson. 2001. Post-breeding movements of a male black-footed albatross Phoebastria nigripes. Marine Ornithology 29:7-10.

Jacobson, L.D., J. Brodziak, and J. Rogers. 2001. Depth distributions and time-varying bottom trawl selectivities for Dover sole (Microstomus pacificus), sablefish (Anoplopoma fimbria), and thornyheads (Sebastolobus alascanus and S. altivelis) in a commercial fishery. Fish. Bull., U.S. 99:309-327.

Jacobson, L.D., J.A.A. De Oliveira, M. Barange, M.A. Cisneros-Mata, R. Felix-Uraga, J.R. Hunter, J. Yeong Kim, Y. Matsuura, M. Niquen, C. Porteiro, B. Rothschild, R.P. Sanchez, R. Serra, A. Uriate, and T. Wada. 2001. Surplus production, variability, and climate change in the great sardine and anchovy fisheries. Can. J. Fish. Aquat. Sci. 58:1891-1903.

Kim, J.Y. and N.C.H. Lo. 2001. Temporal variation of seasonality of egg production and the spawning biomass of Pacific anchovy, Engraulis japonicus, in the southern waters of Korea in 1983-1994. Fish. Oceanogr. 10(3):297-310.

Lo, N.C.H., J.R. Hunter, and R. Charter. 2001. Use of a continuous egg sampler for ichthyoplankton surveys: application to the estimation of daily egg production of Pacific sardine (Sardinops sagax) off California. Fish. Bull., U.S., 99:554-571.

Logerwell, E.A. 2001. Metabolic rate of California Pacific sardine estimated from energy losses during starvation. Tran. Amer. Fish. Soc. 130:526-530.

Logerwell, E.A. and P.E. Smith. 2001. Mesoscale eddies and survival of late stage Pacific sardine (Sardinops sagax) larvae. Fish. Oceanogr. 10(1):13-25.

Logerwell, E.A. and P.E. Smith. 2001. GIS mapping of survivors' habitat of pelagic fish off California. In: Proceedings of the first international symposium on Geographic Information Systems (GIS) in fishery science, T. Nishida, P.J. Kailola, and C.E. Hollingworth (eds.). Seattle, WA, 2-4 March 1999, pp 51-64.

Moser, H.G., R.L. Charter, P.E. Smith, D.A. Ambrose, W. Watson, S.R. Charter, and E.M. Sandknop. 2001. Distributional atlas of fish larvae and eggs in the Southern California Bight region: 1951-1998. CalCOFI Atlas 34, 166 pp.

Moser, H.G., R.L. Charter, W. Watson, D.A. Ambrose, K.T. Hill, P.E. Smith, J.L. Butler, E.M. Sandknop, and S.R. Charter. 2001. The CalCOFI ichthyoplankton time series: Potential contributions to the management of rocky shore fishes. Calif. Coop. Oceanic Fish. Invest. Rep. 42:112-128.

Preti, A., S.E. Smith, and D.A. Ramon. Submitted to CalCOFI Reports. Food of the common thresher shark (Alopias vulpinus) sampled from the California-Oregon drift gill net fishery, 1998-99.

Smith, P.E, J.K. Horne, and D.C. Schneider. 2001. Spatial dynamics of anchovy, sardine, and hake pre-recruit stages in the California Current. ICES J. Mar. Sci. 58:1063-1071.

Smith, S.E. 2001. Leopard Shark. In California's Living Marine Resources: A Status Report. California Department of Fish and Game, University of California Agriculture and Natural Resources, W.S. Leet , C.M. Dewees, R. Klingbiel, and E. J. Larson (eds). Sea Grant Publication SG01-11, pp 252-254.

Smith, S.E. and S. J. Crooke. 2001. Dolphin. In California's Living Marine Resources: A Status Report. California Department of Fish and Game, University of California Agriculture and Natural Resources, W.S. Leet , C.M. Dewees, R. Klingbiel, and E. J. Larson (eds). Sea Grant Publication SG01-11, pp 352-353.

Smith, S.E. and D. Aseltine-Neilson. 2001. Thresher Shark. In California's Living Marine Resources: A Status Report. California Department of Fish and Game, University of California Agriculture and Natural Resources, W.S. Leet , C.M. Dewees, R. Klingbiel, and E. J. Larson (eds). Sea Grant Publication SG01-11, pp 339-341.

Watson, W. 2001. Larvae of Enchelyurus ater (Gunther, 1877) and E. kraussi (Klunzinger, 1871) (Pisces: Blenniidae: Omobranchini). Records of the Australian Museum 53:57-70.


2000

Bograd, S.J., P.M. DiGiacomo, R. Duarzo, T.L. Hayward, K.D. Hyrenbach, R.J. Lynn, A.W. Mantyla, F.B. Schwing, W.J. Sydeman, T. Baumgartner, B. Laveniegos, and C.S. Moore. 2000. The state of the California Current, 1999-2000: forward to a new regime? Calif. Coop. Oceanic Fish. Invest. Rep. 41:26 -52.

Browman, H.I., C. A. Rodriguez, F. Beland, J.J. Cullen, R.F. Davis, J.H.M. Kouwenberg, P.S. Kuhn, B. McArthur, J.A. Runge, J.-F. St-Pierre, and R.D. Vetter. 2000. Impact of ultraviolet radiation on marine crustacean zooplankton and ichthyoplankton: a synthesis of results from the estuary and Gulf of St. Lawrence, Canada. Mar. Ecol. Prog. Ser. 199:293-311.

Butler, J.L. and A. Folkvord. 2000. Section 2: Estimation of fish age and growth. Fish. Res. 46(2000):51-52.

Campbell, H., S.F. Herrick, Jr., and D. Squires. 2000. The role of research in fisheries management: the conservation of dolphins in the Eastern Tropical Pacific and the exploitation of southern bluefin tuna in the Southern Ocean. Ocean Development & International Law 31:347-375.

Checkley, D.M, Jr., R.C. Dotson, and D.A. Griffith. 2000. Continuous, underway sampling of eggs of Pacific sardine (Sardinops sagax) and northern anchovy (Engraulis mordax) in spring 1996 and 1997 off southern and central California. Deep-Sea Res. II. 47:1139-1155.

Demer, D.A., M. Barange and A.J. Boyd. 2000. Measurements of three-dimensional fish school velocities with an acoustic Doppler current profiler. Fish. Res. 47:201-214.

Finneran, J.J., C.W. Oliver, K.M. Schaefer, and S.H. Ridgway. 2000. Source levels and estimated yellowfin tuna (Thunnus albacares) detection ranges for dolphin jaw pops, breaches, and tail slaps. J. Acoust. Soc. Am. 107(1): 649-656.

Goebel, M.E., D.P. Costa, D.E. Crocker, J.T. Sterling, and D.A. Demer. 2000. Foraging ranges and dive patterns in relation to bathymetry and time-of-day of Antarctic fur seals, Cape Shirreff, Livingston Island, Antarctica. In Antarctic ecosystems: models for wider ecological understanding, W. Davison, C. Howard-Williams, and P. Broady, eds. Caxton Press, Christchurch, New Zealand, pp. 47-50.

Hewitt, R.P. and D.A. Demer. 2000. The use of acoustic sampling to estimate the dispersion and abundance of euphausiids, with an emphasis on Antarctic krill, Euphausia, superba. Fish. Res. 47:215-229.

Lo, N.C.H., J.R. Hunter, and J.H. Churnside. 2000. Modeling statistical performance of an airborne lidar survey system for anchovy. Fish. Bull., U.S. 98:264-282.

Moser, H.G., R.L. Charter, W.Watson, D.A. Ambrose, J.L. Butler, S.R. Charter, and E.M. Sandknop. 2000. Abundance and distribution of rockfish (Sebastes) larvae in the Southern California Bight in relation to environmental conditions and fishery exploitation. Calif. Coop. Oceanic Fish. Invest. Rep. 41:132-147.

Nachtigall, P.E., W.W.L. Au, J.L. Pawloski, K. Andrews and C.W. Oliver (2000). Measurements of the low frequency components of active and passive sounds produced by dolphins. Aquatic Mammals 26(3): 167-174.

Rocha-Olivares, A., H.G. Moser, and J. Stannard. 2000. Molecular identification and description of pelagic young of the rockfishes Sebastes constellatus and Sebastes ensifer. Fish. Bull, U.S. 98:353-363.

Schaefer, K. M. and C. W. Oliver. 2000. Shape, volume, and resonance frequency of the swimbladder of yellowfin tuna (Thunnus albacares). Fish. Bull. 98(2): 364-374.

Smith, P.E. 2000. Pelagic fish early life history: CalCOFI overview. In Fisheries oceanography - An integrative approach to fisheries ecology and management, P.J. Harrison and T.R. Parsons, eds. Blackwell Science, Oxnard, England, pp 8-23.

Watson, W. 2000. Champsodontidae, Blenniidae, Schindleriidae. In The larvae of Indo_Pacific coastal fishes. J. M. Leis and B. M. Carson_Ewart (eds.). Brill. Boston, 850 p.

Watson, W. and M.G. Bradbury. 2000. Ogcocephalidae. In The larvae of Indo_Pacific coastal fishes. J. M. Leis and B. M. Carson_Ewart (eds.). Brill. Boston, 850 p.

Watson, W., J.M. Leis, and T. Trnski. 2000. Antennariidae. In The larvae of Indo_Pacific coastal fishes. J. M. Leis and B. M. Carson_Ewart (eds.). Brill. Boston, 850 p.

Zorn, H.M., J.H. Churnside, and C.W. Oliver. 2000. Laser safety thresholds for cetaceans and pinnipeds. Mar. Mamm. Sci., 16(1): 186-202.

1999

Bertignac, M., J. Hampton, and A. Coan. 1999. Estimates of exploitation rates for north Pacific albacore, Thunnus alalunga, from tagging data. Fish. Bull. 97 (3):421-433.

Butler, J., D. Fuller, and M. Yaremko. 1999. Age and growth of Loligo opalescens off California during 1998. Calif. Coop. Oceanic Fish. Invest. Rep. 40:191-195.

Eitner, B., C. Kimbrell, and R. Vetter. 1999. Sebastes moseri (Scorpaeniformes: Scorpaenidae), a new rockfish from the eastern North Pacific. Copeia 1999(1):85-92.

Elston, J.A., J.D. Hastie, and D. Squires. 1999. Market linkages beetween the U.S. and Japan: an application to the fisheries industry. Japan and the World Economy 11(1999):517-530.

Gaggiotti, O.E. and R.D. Vetter. 1999. Effect of life history strategy, environmental variability, and overexploitation on the genetic diversity of pelagic fish populations. Can. J. Fish. Aquat. Sci. 56:1-13.

Gartz, R.G., L.W. Miller, R.W. Fujimura and P.E. Smith. 1999. Measurement of larval striped bass (Morone saxatilis) net avoidance using evasion radius estimation to improve estimates of abundance and mortality. J. Plankton Res. 21(3):561-580.

Hayward, T.L., T.R. Baumgartner, D.M. Checkley, R. Durazo, G. Gaxiola-Castro, K.D. Hyrenbach, A.W. Mantyla, M.M. Mullin, T. Murphree, F.B. Schwing, P.E. Smith, and M.J. Tegner. 1999. The state of the California Current in 1998-1999: Transition to cool-water conditions. Calif. Coop. Oceanic Fish. Invest. Rep. 40:29-62.

Horne, J.K, P.E. Smith, and D.C. Schneider. 1999. Comparative examination of scale-explicit biological and physical processes: recruitment of Pacific hake (Merluccius productus). Can. J. Fish. Aquat. Sci. 56(Suppl. 1):170-179.

Olivar, M.P., H.G. Moser, and L.E. Beckley. 1999. Lanternfish larvae from the Agulhas current (SW Indian Ocean). Sci. Mar. 63(2):101-120.

Moser, H.G. 1999. Review of AThe first year in the life of estuarine fishes in the Middle Atlantic Bight@ by K.W. Able and M.P. Fahay. Rutgers University Press, Copeia 1999(1):232-233.

Moser, H.G. and T. Pommeranz. 1999. Vertical distribution of eggs and larvae of northern anchovy, Engraulis mordax, and the larvae of associated fishes at two sites in the Southern California Bight. Fish. Bull., U.S. 97:920-943.

Rocha-Olivares, A. and R.D. Vetter. 1999. Effects of oceanographic circulation on the gene flow, genetic structure, and phylogeography of the rosethorn rockfish (Sebastes helvomaculatus). Can. J. Fish. Aquat. Sci. 56:803-813.

Rocha-Olivares, A., R.H. Rosenblatt and R.D. Vetter. 1999. Cryptic species of rockfishes (Sebastes Scorpaenidae) in the southern hemisphere inferred from mitochondrial lineages. J. Heredity 90(3):404-411.

Rocha-Olivares, A., R.H. Rosenblatt, and R.D. Vetter. 1999. Molecular evolution, systematics and zoogeography of the rockfish subgenus Sebastosomus (Sebastes, Scorpaenidae) based on mitochondrial cytochrome b and control region sequences. Mol. Phylogenet. Evol. 11(3):441-458.

Rocha-Olivares, A., C.A. Kimbrell, B.J. Eitner and R.D. Vetter. 1999. Evolution of a mitochondrial cytochrome b gene sequence in the species-rich genus Sebastes (Teleostei, Scorpaenidae) and its utility in testing the monophyly of the subgenus Sebastomus. Mol. Phylogenet. Evol. 11(3):426-440.

Schaefer, K.M. and J. Childers. 1999. Northernmost occurrence of the slender tuna, Allothunnus fallai, in the Pacific Ocean. Cal. Fish & Game 85(3):121-123.

Squires, D. and J. Kirkley. 1999. Skipper skill and panel data in fishing industries. Can. J. Fish Aquat. Sci. 56: 2011-2018.

Watson, W. 1999. Early life history stages of the whitetip flyingfish, Cheilopogon xenopterus (Gilbert 1890) (Pisces: Exocoetidae). Fish. Bull., U.S. 97:1031-1042.

Watson, W., R.L. Charter, H.G. Moser, R.D. Vetter, D.A. Ambrose, S.R. Charter, L.L. Robertson, E.M. Sandknop, E.A. Lynn, and J. Stannard. 1999. Fine-scale distributions of planktonic fish eggs in the vicinities of Big Sycamore Canyon and Vandenberg Ecological Reserves, and Anacapa and San Miguel Islands, California. Calif. Coop. Oceanic Fish. Invest. Rep. 40:128-153.

Vetter, R.D. A. Kurtzman, and T. Mori. 1999. Diel cycles of DNA damage and repair in eggs and larvae of northern anchovy, Engraulis mordax, exposed to solar ultraviolet radiation. Photochem. Photiobiol. 69:27-33.

1998

Fieldler, P.C., S.B. Reilly, R.P. Hewitt, D. Demer, V.A. Philbrick, S. Smith, W. Armstrong, D.A. Croll, B.R. Tershy, and B.R. Mate. 1998. Blue whale habitat and prey in the California Channel Islands. Deep-Sea Research Part II 45, 1781-1801.

Holts, D. et al. 1998. Pelagic shark fisheries along the west Coast of the United States and Baja California, Mexico. in: Fisheries Research 39 (1998) 115-125.

Kirkley, J., D. Squires, and I.E. Strand. 1998. Characterizing managerial skill and technical efficiency in a fishery. J. Prod. Analysis 9:145-160.

Lynn, R.J., T. Baumgartner, J. Garcia, C.A. Collins, T.L. Hayward, K.D. Hyrenbach, A.W. Mantyla, T. Murphree, A. Shankle, F.B. Schwing, K.M. Sakuma and M.J. Tegner. 1998. The state of the California Current, 1997-1998: Transition to El Nino conditions. Calif. Coop. Oceanic Fish. Invest. Rep. 39:25-49.

Nonacs, P., P.E. Smith, and M. Mangel. 1998. Modeling foraging in the northern anchovy (Engraulis mordax): individual behavior can predict school dynamics and population biology. Can. J. Fish. Aquat. Sci. 55:1179-1188.

Rocha-Olivares, A. 1998. Multiplex haplotype-specific PCR: a new approach for species identification of the early life stages of rockfishes of the species-rich genus Sebastes Cuvier. J. Exp. Mar. Biol. Ecol. 231:279-290.

Squires, D., H. Campbell, S. Cunningham, C. Dewees, R. Quentin Grafton, S.F. Herrick, Jr., J. Kirkley, S. Pascoe, K. Salvanes, B. Shallard, B. Turris, and N. Vestergaard. 1998. Individual transferable quotas in multispecies fisheries. Mar. Pol. 22(2):135-159.

Wada, T. and L.D. Jacobson. 1998. Regimes and stock-recruitment relationships in Japanese sardine (Sardinops melanostictus), 1951-1995. Can. J. Fish. Aquat. Sci. 55:2455-2463.

Watson, W. 1998. Early stages of the bloody frogfish, Antennarius sanguineus Gill 1863, and the bandtail frogfish, Antennatus strigatus (Gill 1863) (Pisces: Antennariidae). Calif. Coop. Oceanic Fish. Invest. Rep. 39:219-235.

Watson, W. and A.G. Miskiewicz. 1998. Blenniidae: Blennies. In Larvae of temperate Australian fishes, F.J. Neira, A.G. Miskiewicz, and T. Trinski, eds. Univ. Western Australia Press, Nedlands, pp. 368-381.

1997

Au, D., and S. Smith. 1997. A demographic method with population density compensation for estimating productivity and yield per recruit of the leopard shark (Triakis semifasciata). Can. J. Fish. Aquat Sci. 54:415-420.

Butler, J.L. and R.N. Nishimoto. 1997. Growth and cohort dynamics of larval Pacific hake, Merluccius productus. Calif. Coop. Oceanic Fish. Invest. Rep. 38:63-68.

Coan, A., G. Sakagawa, D. Prescott, and G. Yamasaki. 1997. The 1996 U.S. purse seine fishery for tropical tunas in the central-western Pacific Ocean. Marine Fisheries Review 59(3):34-40

Herrick, Jr. S.F., B. Rader and D. Squires. 1997. Access fees and economic benefits in the western Pacific United States purse seine tuna fishery. Mar. Pol. 21(1):83-96.

Horne, J.K. and P.E. Smith. 1997. Space and time scales in Pacific hake recruitment processes: latitudinal variation over annual cycles. Calif. Coop. Oceanic Fish. Invest. Rep. 38:90-102.

Hunter, J. Roe and Nancy C.H. Lo. 1997. The daily egg production method of biomass estimation: some problems and potential improvements. Ozeanografika 2:41-69.

Lai, N.C., K. Korsmeyer, D.B. Holts, L. Laughlin, and J.B. Graham. 1997. Hemodynamics and blood properties of the shortfin mako shark, Isurus oxyrinchus. Copeia(2):424-428

Lo, N.C.H. 1997. Empirical analyses of the precision of regression estimates of daily egg production and egg mortality of pelagic fish for daily egg production method. Ozeanografika 2:71-89.

Lo, N.C.H., D. Griffith, and J.R. Hunter. 1997. Using a restricted adaptive cluster sampling to estimate Pacific hake larval abundance. Calif. Coop. Oceanic Fish. Invest. Rep. 38:103-113.

Moser, H.G., N.C.H. Lo, and P.E. Smith. 1997. Vertical distribution of Pacific hake eggs in relation to stage of development and temperature. Calif. Coop. Oceanic Fish. Invest. Rep. 38:120-126.

Mundy, B.C. and H.G. Moser. 1997. Development of early stages of pelagic armorhead Pseudopentaceros wheeleri with notes on juvenile Ps. richardsoni and larval Histiopterus typus (Pisces, Percoidei, Pentacerotidae). Bull. Mar. Sci. 61(2):241-269.

Pertierra, J.P., J. Lleonart, and N.C.H. Lo. 1997. Application of a stage-specific matrix model and length-cohort based analysis to assess the anchovy fishery in Catalan coastal waters (NW Mediterranean Sea). Fish. Res. 30(1997):127-137.

Ramon, D., and N. Bartoo. 1997. Effects of formalin and freezing on albacore ovaries. Fishery Bulletin 95:869-872.

Vetter, R.D. and E.A. Lynn. 1997. Bathymetric demography, enzyme activity patterns, and bioenergetics of deep-living scorpaenid fishes (genera Sebastes and Sebastolobus): paradigms revisited. Mar. Ecol. Prog. Ser. 155:173-188.

Last modified: 12/24/2014