Turtle DNA Sequence List

To facilitate haplotype designations and avoid confusion among ocean basins, we are using the nomenclature of CMP# for the Pacific.  Check also sequences posted for the Atlantic on the Archie Carr Center website The previous link is a link to Non-Federal government web site. Click to review NOAA Fisheries disclaimer .

Turtle-dna-logo.jpgIf you have a new sequence from the Pacific or Indian Ocean please email it to Peter.Dutton@noaa.gov and we will confirm the status of the sequence and assign a new sequence designation number.  Sequences will not be posted on the website until the researcher who is the source of the new sequence gives permission.

It is the responsibility of the author of the new sequence to submit their sequence to GENBANK (http://www.ncbi.nlm.nih.gov).

The table below summarizes the named haplotypes for Pacific and Indian Ocean green turtles with GENBANK Accession numbers and references.

CM sequence designation

Other published or given sequence name(s)

GenBank Accession Number

Author/Reference

CMP1

 

AY540055

Dutton, unpublished1

CMP2

 

AY540056

Dutton, unpublished

CMP3

 

AY540057

Dutton, unpublished

CMP4

 

AY382323

Dutton et al., unpublished2

CMP5

 

AY382324

Dutton et al., unpublished2

CMP6

 

 

Dutton, unpublished

CMP7

 

AY382325

Dutton et al., unpublished2

CMP8

 

AY382326

Dutton et al., unpublished2

CMP9

 

AY540058

Dutton, unpublished

CMP10

 

AY540059

Dutton, unpublished

CMP11

 

AY540060

Dutton, unpublished

CMP12

 

AY382327

Dutton et al., unpublished2

CMP13

 

AY540061

Dutton, unpublished

CMP14

 

AY540062

Dutton, unpublished

CMP15

 

AY540063

Dutton, unpublished

CMP16

 

AY540064

Dutton, unpublished

CMP17

 

AY540065

Dutton, unpublished

CMP18

 

AY540066

Dutton, unpublished

CMP19

 

AY540067

Dutton, unpublished

CMP20

Ac

AY540068

Broderick and Dutton unpublished

CMP21

 

AY540069

Dutton, unpublished

CMP22

 

AY540070

Dutton, unpublished

CMP23

FPa

  sequence

Norman et al. 1994

CMP24

 

AY540071

Dutton, unpublished

1equivalent to HAW in Norman et al. 1994, except typographical error found in this published sequence and so HAW is not assigned here.

2Cited in Chassin-Noria et al. 2004

REFERENCES

Norman, JA, C Moritz, and CJ Limpus.  1994.  Mitochondrial DNA control region polymorphisms: genetic markers for ecological studies of marine turtles.  Molecular Ecology 3:363-373.

Chassin-Noria O, A Abreu-Grobois, PH Dutton, K. Oyama.  2004.  Conservation genetics of the east Pacific green turtle (Chelonia mydas) in michoacan, Mexico.  Genetica 1891:1-12.

Last modified: 12/24/2014